Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38171 * 120.49357 * 2 1 4 4 N 1.31801 * 120.88978 * 179.97438 * 3 2 1 5 5 C 1.31821 * 122.05237 * 0.02562 * 4 3 2 6 6 C 1.38128 * 120.89420 * 359.97438 * 5 4 3 7 7 C 1.39792 * 120.50320 * 179.97438 * 2 1 3 8 8 C 1.48154 * 120.92039 * 0.02562 * 7 2 1 9 9 O 1.21508 * 120.00104 * 306.88799 * 8 7 2 10 10 N 1.34781 * 119.99473 * 126.88499 * 8 7 2 11 11 C 1.46500 * 120.00232 * 4.20461 * 10 8 7 12 12 C 1.46503 * 119.99654 * 184.20856 * 10 8 7 13 13 H 1.08998 * 109.46891 * 359.97438 * 12 10 8 14 14 C 1.52995 * 109.47177 * 120.00007 * 12 10 8 15 15 C 1.53005 * 109.46879 * 240.00308 * 12 10 8 16 16 N 1.46496 * 109.47540 * 54.99485 * 15 12 10 17 17 C 1.36929 * 120.00426 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00467 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99733 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00076 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47318 * 89.99901 * 21 19 17 23 23 H 1.48504 * 109.47085 * 209.99834 * 21 19 17 24 24 H 1.48505 * 109.47402 * 329.99227 * 21 19 17 25 25 H 1.09002 * 109.46778 * 85.30877 * 1 2 3 26 26 H 1.09001 * 109.47173 * 205.30062 * 1 2 3 27 27 H 1.08991 * 109.47247 * 325.30600 * 1 2 3 28 28 H 1.08001 * 119.55957 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.55512 * 179.72283 * 5 4 3 30 30 H 1.08012 * 120.49514 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.46473 * 84.56034 * 11 10 8 32 32 H 1.08998 * 109.47281 * 204.55600 * 11 10 8 33 33 H 1.08998 * 109.47094 * 324.56444 * 11 10 8 34 34 H 1.08998 * 109.47276 * 60.00155 * 14 12 10 35 35 H 1.09007 * 109.47282 * 179.97438 * 14 12 10 36 36 H 1.09000 * 109.47123 * 299.99823 * 14 12 10 37 37 H 1.09001 * 109.47079 * 175.00294 * 15 12 10 38 38 H 1.09003 * 109.46438 * 294.99672 * 15 12 10 39 39 H 0.97010 * 119.99471 * 0.02562 * 16 15 12 40 40 H 0.96996 * 119.99831 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 0.0005 5 6 4.2334 0.0873 0.0005 6 6 3.6137 -1.1471 0.0006 7 6 2.2166 -1.2045 0.0005 8 6 1.5079 -2.5055 0.0006 9 8 0.6623 -2.7367 0.8419 10 7 1.8013 -3.4326 -0.9328 11 6 2.8838 -3.1914 -1.8900 12 6 1.0375 -4.6814 -0.9901 13 1 0.2808 -4.6808 -0.2055 14 6 0.3573 -4.8010 -2.3553 15 6 1.9826 -5.8671 -0.7855 16 7 2.7223 -5.6916 0.4668 17 6 3.6337 -6.6343 0.8616 18 1 3.8075 -7.5070 0.2495 19 6 4.3342 -6.4683 2.0484 20 7 4.1227 -5.4045 2.7941 21 14 5.5779 -7.7539 2.5865 22 1 6.9145 -7.4094 2.0389 23 1 5.6444 -7.7880 4.0697 24 1 5.1635 -9.0866 2.0790 25 1 -0.3633 0.0841 -1.0243 26 1 -0.3633 -0.9291 0.4392 27 1 -0.3633 0.8449 0.5849 28 1 1.6690 2.1264 -0.0004 29 1 5.3120 0.1418 -0.0036 30 1 4.1996 -2.0546 0.0002 31 1 3.8349 -3.4815 -1.4434 32 1 2.7106 -3.7806 -2.7905 33 1 2.9114 -2.1327 -2.1480 34 1 1.1142 -4.8018 -3.1396 35 1 -0.2107 -5.7304 -2.3981 36 1 -0.3161 -3.9563 -2.5010 37 1 1.4037 -6.7895 -0.7394 38 1 2.6846 -5.9199 -1.6178 39 1 2.5665 -4.9076 1.0163 40 1 4.6125 -5.2883 3.6232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270957565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = 16.624719 kcal Electronic energy + Delta-G solvation = -22163.044060 eV Core-core repulsion = 18978.439371 eV Total energy + Delta-G solvation = -3184.604689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71393 -39.09805 -36.46755 -34.11615 -33.45501 -32.57023 -31.22005 -30.01707 -27.42017 -26.77308 -25.68667 -24.55664 -22.71355 -22.27673 -20.98295 -19.09445 -17.55213 -17.11566 -16.64184 -16.23034 -15.30089 -15.12995 -14.65606 -14.56804 -14.19830 -13.66847 -13.49833 -13.36932 -13.19395 -13.06823 -12.73342 -12.49751 -12.31951 -12.19404 -11.99707 -11.91636 -11.53743 -11.44601 -10.85535 -10.80382 -10.50248 -10.06899 -10.05544 -9.71155 -9.60763 -9.21038 -8.91026 -8.88417 -8.33670 -6.91649 -5.74210 -3.04144 0.97337 1.11983 2.93173 3.17049 3.42672 3.48038 3.50288 3.79534 4.43025 4.51563 4.60354 4.81003 4.87199 5.02858 5.14556 5.28981 5.34923 5.45951 5.51714 5.55684 5.58430 5.61565 5.65165 5.74538 5.88490 5.91437 6.03304 6.07337 6.10440 6.14760 6.31293 6.33265 6.43952 6.65712 6.69030 6.91796 7.60081 7.69221 7.93385 8.38083 8.42997 9.54527 10.12691 10.48063 11.47628 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.005857 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.694431 B = 4779.590303 C = 5719.017593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.095 4.095 3 C 0.090 3.910 4 N -0.475 5.475 5 C 0.088 3.912 6 C -0.128 4.128 7 C -0.074 4.074 8 C 0.565 3.435 9 O -0.523 6.523 10 N -0.588 5.588 11 C 0.078 3.922 12 C 0.125 3.875 13 H 0.101 0.899 14 C -0.156 4.156 15 C 0.144 3.856 16 N -0.728 5.728 17 C -0.242 4.242 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.029 0.971 38 H 0.021 0.979 39 H 0.386 0.614 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 10.554 -11.891 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 C -0.068 4.068 4 N -0.183 5.183 5 C -0.069 4.069 6 C -0.148 4.148 7 C -0.085 4.085 8 C 0.352 3.648 9 O -0.400 6.400 10 N -0.320 5.320 11 C -0.065 4.065 12 C 0.022 3.978 13 H 0.119 0.881 14 C -0.214 4.214 15 C 0.016 3.984 16 N -0.373 5.373 17 C -0.373 4.373 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.175 0.825 29 H 0.177 0.823 30 H 0.166 0.834 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.221 0.779 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.108 11.046 -11.439 16.702 hybrid contribution 0.505 -1.353 0.579 1.556 sum -4.603 9.693 -10.859 15.266 Atomic orbital electron populations 1.20951 0.89868 1.05078 1.02470 1.20931 0.97817 0.92587 0.98397 1.22576 0.89873 0.97058 0.97251 1.67512 1.08193 1.31888 1.10731 1.22694 1.00465 0.87197 0.96510 1.22520 0.93846 1.00688 0.97788 1.20234 0.94187 0.93798 1.00285 1.18128 0.82301 0.83242 0.81121 1.90763 1.33672 1.79135 1.36423 1.47592 1.34692 1.17638 1.32061 1.21845 0.90775 1.00949 0.92891 1.21455 0.94614 0.83338 0.98392 0.88060 1.22072 1.00479 1.02162 0.96690 1.21004 0.92908 0.93904 0.90623 1.42304 1.46785 1.26576 1.21612 1.19197 1.13851 1.00767 1.03480 0.91289 1.24751 1.00564 0.97965 0.97572 1.69689 1.44825 1.28199 1.14939 0.86214 0.81395 0.80986 0.77708 1.21790 1.21803 1.20808 0.91070 0.89092 0.90896 0.82548 0.82254 0.83412 0.91479 0.90825 0.91956 0.92285 0.91192 0.92603 0.95368 0.96143 0.77947 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.74 36.01 0.35 -1.15 16 2 C -0.09 -1.30 5.93 -104.06 -0.62 -1.92 16 3 C 0.09 1.13 10.88 -17.59 -0.19 0.94 16 4 N -0.47 -6.56 10.33 -13.31 -0.14 -6.70 16 5 C 0.09 1.17 11.17 -17.60 -0.20 0.97 16 6 C -0.13 -1.90 8.06 -39.03 -0.31 -2.22 16 7 C -0.07 -1.17 4.75 -104.65 -0.50 -1.67 16 8 C 0.57 10.28 6.38 -12.19 -0.08 10.20 16 9 O -0.52 -11.27 14.47 5.36 0.08 -11.19 16 10 N -0.59 -9.61 2.24 -174.93 -0.39 -10.00 16 11 C 0.08 1.05 8.30 59.85 0.50 1.54 16 12 C 0.12 2.08 2.79 -67.93 -0.19 1.89 16 13 H 0.10 1.92 6.91 -51.93 -0.36 1.57 16 14 C -0.16 -1.90 9.18 37.15 0.34 -1.56 16 15 C 0.14 2.85 5.56 -4.04 -0.02 2.83 16 16 N -0.73 -18.58 5.43 -59.91 -0.33 -18.91 16 17 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 21 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 1.33 5.66 -51.93 -0.29 1.04 16 27 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.15 2.28 6.82 -52.48 -0.36 1.92 16 31 H 0.07 1.00 7.28 -51.93 -0.38 0.62 16 32 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 33 H 0.06 0.73 6.47 -51.93 -0.34 0.39 16 34 H 0.06 0.65 6.67 -51.93 -0.35 0.30 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.39 7.84 -51.93 -0.41 -0.01 16 39 H 0.39 10.76 7.07 -40.82 -0.29 10.47 16 40 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -33.79 328.74 -6.89 -40.68 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.60 Total: 9.00 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.16 Total: 2.49 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.13 Total: -63.43 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.79 -6.89 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.307 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds