Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38171 * 120.49357 * 2 1 4 4 N 1.31801 * 120.88978 * 179.97438 * 3 2 1 5 5 C 1.31821 * 122.05237 * 0.02562 * 4 3 2 6 6 C 1.38128 * 120.89420 * 359.97438 * 5 4 3 7 7 C 1.39792 * 120.50320 * 179.97438 * 2 1 3 8 8 C 1.48154 * 120.92039 * 0.02562 * 7 2 1 9 9 O 1.21508 * 120.00104 * 306.88799 * 8 7 2 10 10 N 1.34781 * 119.99473 * 126.88499 * 8 7 2 11 11 C 1.46500 * 120.00232 * 4.20461 * 10 8 7 12 12 C 1.46503 * 119.99654 * 184.20856 * 10 8 7 13 13 H 1.08998 * 109.46891 * 359.97438 * 12 10 8 14 14 C 1.52995 * 109.47177 * 120.00007 * 12 10 8 15 15 C 1.53005 * 109.46879 * 240.00308 * 12 10 8 16 16 N 1.46496 * 109.47540 * 54.99485 * 15 12 10 17 17 C 1.36929 * 120.00426 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00467 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99733 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00076 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47318 * 89.99901 * 21 19 17 23 23 H 1.48504 * 109.47085 * 209.99834 * 21 19 17 24 24 H 1.48505 * 109.47402 * 329.99227 * 21 19 17 25 25 H 1.09002 * 109.46778 * 85.30877 * 1 2 3 26 26 H 1.09001 * 109.47173 * 205.30062 * 1 2 3 27 27 H 1.08991 * 109.47247 * 325.30600 * 1 2 3 28 28 H 1.08001 * 119.55957 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.55512 * 179.72283 * 5 4 3 30 30 H 1.08012 * 120.49514 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.46473 * 84.56034 * 11 10 8 32 32 H 1.08998 * 109.47281 * 204.55600 * 11 10 8 33 33 H 1.08998 * 109.47094 * 324.56444 * 11 10 8 34 34 H 1.08998 * 109.47276 * 60.00155 * 14 12 10 35 35 H 1.09007 * 109.47282 * 179.97438 * 14 12 10 36 36 H 1.09000 * 109.47123 * 299.99823 * 14 12 10 37 37 H 1.09001 * 109.47079 * 175.00294 * 15 12 10 38 38 H 1.09003 * 109.46438 * 294.99672 * 15 12 10 39 39 H 0.97010 * 119.99471 * 0.02562 * 16 15 12 40 40 H 0.96996 * 119.99831 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 0.0005 5 6 4.2334 0.0873 0.0005 6 6 3.6137 -1.1471 0.0006 7 6 2.2166 -1.2045 0.0005 8 6 1.5079 -2.5055 0.0006 9 8 0.6623 -2.7367 0.8419 10 7 1.8013 -3.4326 -0.9328 11 6 2.8838 -3.1914 -1.8900 12 6 1.0375 -4.6814 -0.9901 13 1 0.2808 -4.6808 -0.2055 14 6 0.3573 -4.8010 -2.3553 15 6 1.9826 -5.8671 -0.7855 16 7 2.7223 -5.6916 0.4668 17 6 3.6337 -6.6343 0.8616 18 1 3.8075 -7.5070 0.2495 19 6 4.3342 -6.4683 2.0484 20 7 4.1227 -5.4045 2.7941 21 14 5.5779 -7.7539 2.5865 22 1 6.9145 -7.4094 2.0389 23 1 5.6444 -7.7880 4.0697 24 1 5.1635 -9.0866 2.0790 25 1 -0.3633 0.0841 -1.0243 26 1 -0.3633 -0.9291 0.4392 27 1 -0.3633 0.8449 0.5849 28 1 1.6690 2.1264 -0.0004 29 1 5.3120 0.1418 -0.0036 30 1 4.1996 -2.0546 0.0002 31 1 3.8349 -3.4815 -1.4434 32 1 2.7106 -3.7806 -2.7905 33 1 2.9114 -2.1327 -2.1480 34 1 1.1142 -4.8018 -3.1396 35 1 -0.2107 -5.7304 -2.3981 36 1 -0.3161 -3.9563 -2.5010 37 1 1.4037 -6.7895 -0.7394 38 1 2.6846 -5.9199 -1.6178 39 1 2.5665 -4.9076 1.0163 40 1 4.6125 -5.2883 3.6232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270957565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -6.119203 kcal Electronic energy + Delta-G solvation = -22164.030310 eV Core-core repulsion = 18978.439371 eV Total energy + Delta-G solvation = -3185.590939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90918 -40.33565 -37.94338 -35.92173 -34.59773 -33.92341 -32.74137 -31.59203 -28.44638 -27.93725 -27.40065 -25.77999 -24.47392 -23.46531 -22.27364 -20.44162 -19.13985 -18.77344 -17.88540 -17.48685 -16.79725 -16.40921 -16.22344 -15.81045 -15.45594 -15.22976 -15.05590 -14.77449 -14.36778 -14.28535 -13.95202 -13.74339 -13.66917 -13.34549 -13.23603 -13.05545 -12.98191 -12.78342 -12.56828 -12.52107 -12.15090 -11.82562 -11.75118 -11.37866 -10.97292 -10.75597 -10.38934 -9.93040 -9.67627 -9.01495 -7.94529 -5.24815 -0.17566 0.07242 1.44852 1.47085 1.55568 1.59232 1.91231 2.54374 2.72108 3.30567 3.38378 3.49381 3.78983 3.81078 3.84052 3.98092 4.06468 4.21007 4.28239 4.40852 4.43787 4.56285 4.58794 4.71199 4.75072 4.77623 4.81839 4.87957 4.88570 4.96622 5.10926 5.11701 5.26856 5.31561 5.46627 5.58684 5.63002 6.24376 6.29641 6.88726 7.02947 7.31386 8.07607 8.30684 9.28259 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.005857 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.694431 B = 4779.590303 C = 5719.017593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.098 4.098 3 C 0.098 3.902 4 N -0.484 5.484 5 C 0.090 3.910 6 C -0.138 4.138 7 C -0.095 4.095 8 C 0.557 3.443 9 O -0.570 6.570 10 N -0.586 5.586 11 C 0.079 3.921 12 C 0.128 3.872 13 H 0.070 0.930 14 C -0.143 4.143 15 C 0.142 3.858 16 N -0.742 5.742 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.975 3.025 22 H -0.284 1.284 23 H -0.300 1.300 24 H -0.269 1.269 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.194 0.806 29 H 0.184 0.816 30 H 0.133 0.867 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.038 0.962 39 H 0.371 0.629 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 11.179 -13.957 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 C -0.060 4.060 4 N -0.192 5.192 5 C -0.065 4.065 6 C -0.158 4.158 7 C -0.106 4.106 8 C 0.346 3.654 9 O -0.450 6.450 10 N -0.317 5.317 11 C -0.063 4.063 12 C 0.025 3.975 13 H 0.088 0.912 14 C -0.201 4.201 15 C 0.014 3.986 16 N -0.385 5.385 17 C -0.374 4.374 18 H 0.097 0.903 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.804 3.196 22 H -0.211 1.211 23 H -0.227 1.227 24 H -0.193 1.193 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.211 0.789 29 H 0.201 0.799 30 H 0.151 0.849 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.202 0.798 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.922 11.638 -13.586 18.554 hybrid contribution 0.400 -1.538 1.168 1.972 sum -4.522 10.101 -12.418 16.634 Atomic orbital electron populations 1.20945 0.88638 1.04378 1.03948 1.21207 0.98809 0.92192 0.97876 1.23132 0.89586 0.97888 0.95356 1.67621 1.08855 1.31758 1.10985 1.23025 1.01620 0.86399 0.95473 1.22434 0.93440 1.00937 0.99037 1.20236 0.94668 0.93474 1.02210 1.18597 0.81852 0.84345 0.80623 1.90727 1.35859 1.80217 1.38210 1.47718 1.34965 1.17005 1.31987 1.21974 0.88854 1.02694 0.92771 1.21381 0.93379 0.82444 1.00321 0.91151 1.21989 1.00869 1.03376 0.93844 1.21227 0.93269 0.95463 0.88602 1.42526 1.47071 1.25584 1.23311 1.19642 1.13429 1.01062 1.03303 0.90306 1.25597 1.03084 1.00138 0.98042 1.69880 1.46379 1.30457 1.15288 0.85120 0.79051 0.78971 0.76470 1.21069 1.22734 1.19335 0.88934 0.92291 0.88444 0.78946 0.79876 0.84865 0.93404 0.88240 0.90130 0.90291 0.89783 0.91610 0.95030 0.94389 0.79780 0.94300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.74 71.24 0.69 -2.06 16 2 C -0.10 -2.60 5.93 -19.50 -0.12 -2.71 16 3 C 0.10 2.23 10.88 84.68 0.92 3.15 16 4 N -0.48 -12.41 10.33 -196.01 -2.03 -14.43 16 5 C 0.09 2.32 11.17 84.67 0.95 3.26 16 6 C -0.14 -4.15 8.06 22.63 0.18 -3.96 16 7 C -0.09 -3.05 4.75 -19.88 -0.09 -3.14 16 8 C 0.56 21.03 6.38 86.88 0.55 21.58 16 9 O -0.57 -26.03 14.47 -3.74 -0.05 -26.08 16 10 N -0.59 -19.31 2.24 -825.66 -1.85 -21.17 16 11 C 0.08 2.04 8.30 127.77 1.06 3.10 16 12 C 0.13 4.26 2.79 44.99 0.13 4.38 16 13 H 0.07 2.79 6.91 -2.39 -0.02 2.77 16 14 C -0.14 -3.16 9.18 71.98 0.66 -2.50 16 15 C 0.14 5.54 5.56 86.38 0.48 6.02 16 16 N -0.74 -38.64 5.43 -343.45 -1.87 -40.50 16 17 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 20 N -0.97 -61.48 13.06 21.65 0.28 -61.20 16 21 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.76 5.66 -2.39 -0.01 1.75 16 27 H 0.10 1.68 8.12 -2.39 -0.02 1.66 16 28 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 29 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.13 4.32 6.82 -2.90 -0.02 4.30 16 31 H 0.05 1.43 7.28 -2.39 -0.02 1.41 16 32 H 0.10 2.01 6.44 -2.39 -0.02 2.00 16 33 H 0.08 1.79 6.47 -2.39 -0.02 1.77 16 34 H 0.08 1.45 6.67 -2.39 -0.02 1.43 16 35 H 0.08 1.64 8.14 -2.38 -0.02 1.63 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.04 1.38 7.84 -2.39 -0.02 1.36 16 39 H 0.37 21.51 7.07 -92.70 -0.65 20.86 16 40 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -75.48 328.74 3.63 -71.85 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.40 Total: 32.43 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.72 Total: 10.29 kcal Atomic # 7 Polarization: -131.84 SS G_CDS: -5.46 Total: -137.30 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.48 3.63 -71.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.731 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds