Wall clock time and date at job start Mon Mar 30 2020 01:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38402 * 120.84790 * 2 1 4 4 C 1.38310 * 119.30098 * 179.97438 * 3 2 1 5 5 N 1.31956 * 121.08211 * 0.02562 * 4 3 2 6 6 C 1.31669 * 121.88075 * 359.97438 * 5 4 3 7 7 C 1.39561 * 120.56216 * 359.97150 * 6 5 4 8 8 C 1.47846 * 120.55929 * 180.02562 * 7 6 5 9 9 O 1.21549 * 120.00224 * 185.99736 * 8 7 6 10 10 N 1.34775 * 119.99820 * 5.99839 * 8 7 6 11 11 C 1.46503 * 120.00067 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46575 * 325.00065 * 11 10 8 13 13 C 1.53000 * 109.46802 * 85.00033 * 11 10 8 14 14 C 1.53002 * 109.47077 * 204.99848 * 11 10 8 15 15 C 1.52996 * 109.46876 * 65.00199 * 14 11 10 16 16 N 1.46502 * 109.46926 * 179.97438 * 15 14 11 17 17 C 1.36934 * 120.00095 * 179.97438 * 16 15 14 18 18 H 1.08008 * 120.00272 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00487 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99555 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00497 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47100 * 89.99514 * 21 19 17 23 23 H 1.48498 * 109.47082 * 209.99943 * 21 19 17 24 24 H 1.48504 * 109.46722 * 329.99348 * 21 19 17 25 25 H 1.09007 * 109.46974 * 96.54694 * 1 2 3 26 26 H 1.09004 * 109.46948 * 216.53352 * 1 2 3 27 27 H 1.09000 * 109.47843 * 336.53929 * 1 2 3 28 28 H 1.07995 * 120.35136 * 0.24546 * 3 2 1 29 29 H 1.08001 * 119.46065 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.71769 * 179.97438 * 6 5 4 31 31 H 0.97007 * 119.99835 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.46683 * 180.02562 * 13 11 10 33 33 H 1.08998 * 109.47462 * 300.00162 * 13 11 10 34 34 H 1.09000 * 109.47430 * 60.00069 * 13 11 10 35 35 H 1.09002 * 109.46474 * 184.99862 * 14 11 10 36 36 H 1.08995 * 109.46852 * 304.99929 * 14 11 10 37 37 H 1.08997 * 109.47248 * 299.99653 * 15 14 11 38 38 H 1.09003 * 109.47399 * 59.99587 * 15 14 11 39 39 H 0.96993 * 119.99953 * 0.02562 * 16 15 14 40 40 H 0.97000 * 119.99907 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1882 0.0000 4 6 3.5992 1.1509 0.0005 5 7 4.2497 0.0028 0.0005 6 6 3.6198 -1.1534 0.0005 7 6 2.2250 -1.2016 0.0011 8 6 1.5177 -2.4999 0.0017 9 8 0.3076 -2.5328 -0.1078 10 7 2.2147 -3.6469 0.1236 11 6 1.5139 -4.9334 0.1248 12 1 0.5512 -4.8222 0.6237 13 6 1.2908 -5.3939 -1.3172 14 6 2.3563 -5.9725 0.8674 15 6 2.4747 -5.5748 2.3401 16 7 3.2809 -6.5700 3.0513 17 6 3.5247 -6.4232 4.3908 18 1 3.1231 -5.5733 4.9228 19 6 4.2890 -7.3658 5.0647 20 7 4.7789 -8.4012 4.4162 21 14 4.6211 -7.1658 6.8920 22 1 3.5510 -7.8440 7.6667 23 1 5.9345 -7.7730 7.2258 24 1 4.6418 -5.7213 7.2360 25 1 -0.3633 -0.1172 -1.0210 26 1 -0.3633 -0.8258 0.6118 27 1 -0.3635 0.9427 0.4091 28 1 1.6964 2.1346 0.0040 29 1 4.1556 2.0766 0.0001 30 1 4.1872 -2.0723 0.0001 31 1 3.1805 -3.6206 0.2106 32 1 0.7690 -6.3509 -1.3163 33 1 0.6907 -4.6536 -1.8463 34 1 2.2535 -5.5050 -1.8161 35 1 1.8779 -6.9490 0.7921 36 1 3.3503 -6.0194 0.4227 37 1 2.9530 -4.5983 2.4154 38 1 1.4807 -5.5277 2.7848 39 1 3.6425 -7.3326 2.5733 40 1 5.3126 -9.0602 4.8871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272704586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:41 Heat of formation + Delta-G solvation = 0.055443 kcal Electronic energy + Delta-G solvation = -21000.173413 eV Core-core repulsion = 17814.850226 eV Total energy + Delta-G solvation = -3185.323186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.92086 -39.22988 -36.64632 -34.51266 -33.86775 -32.61708 -31.37439 -30.32031 -28.02323 -27.88638 -24.81446 -23.96297 -22.67747 -21.68598 -20.97702 -20.52341 -17.98819 -17.12861 -16.78711 -16.43353 -15.97110 -15.25752 -15.00966 -14.69902 -14.09680 -13.95040 -13.82626 -13.46709 -13.31834 -13.01339 -12.90185 -12.87956 -12.66531 -12.40590 -12.20620 -11.80913 -11.22585 -11.03330 -10.80693 -10.64823 -10.58803 -10.17034 -10.05068 -9.77940 -9.70520 -9.50365 -9.45916 -9.02238 -8.86554 -6.93367 -5.77390 -3.06216 0.44390 0.95051 2.76870 3.08601 3.43699 3.48855 3.50471 3.63051 4.06801 4.42652 4.45220 4.56009 4.60980 4.76240 4.94143 5.13489 5.21162 5.27655 5.33139 5.39024 5.54300 5.54469 5.59788 5.69885 5.72657 5.89950 5.90663 5.98788 6.15750 6.21773 6.25815 6.31391 6.36213 6.50428 6.79445 6.84174 7.45845 7.62552 7.69693 8.14287 8.41695 9.52853 10.10153 10.44881 11.45535 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.003893 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.653408 B = 7190.108114 C = 8076.195912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.018 3.982 3 C -0.187 4.187 4 C 0.122 3.878 5 N -0.492 5.492 6 C 0.142 3.858 7 C -0.192 4.192 8 C 0.564 3.436 9 O -0.534 6.534 10 N -0.712 5.712 11 C 0.146 3.854 12 H 0.091 0.909 13 C -0.161 4.161 14 C -0.136 4.136 15 C 0.154 3.846 16 N -0.734 5.734 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.401 0.599 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 16.843 -13.643 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.207 4.207 4 C -0.034 4.034 5 N -0.201 5.201 6 C -0.017 4.017 7 C -0.197 4.197 8 C 0.351 3.649 9 O -0.412 6.412 10 N -0.364 5.364 11 C 0.041 3.959 12 H 0.109 0.891 13 C -0.219 4.219 14 C -0.174 4.174 15 C 0.026 3.974 16 N -0.378 5.378 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.158 0.842 29 H 0.177 0.823 30 H 0.177 0.823 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.938 16.867 -13.543 22.432 hybrid contribution 0.058 -0.169 0.959 0.976 sum -5.880 16.698 -12.584 21.720 Atomic orbital electron populations 1.21094 0.89083 1.03623 1.04071 1.20507 0.97582 0.91344 0.89605 1.22078 0.95585 0.98671 1.04336 1.22980 0.91774 0.96472 0.92183 1.67715 1.40843 0.98294 1.13247 1.23037 0.90468 0.96700 0.91518 1.20924 0.95235 0.94508 1.09018 1.17974 0.86940 0.83455 0.76551 1.90714 1.13461 1.87123 1.49951 1.46073 1.10974 1.05799 1.73521 1.21025 0.96963 0.81728 0.96144 0.89132 1.22163 1.01926 1.01603 0.96223 1.22078 1.00078 0.98368 0.96866 1.20635 0.94663 0.92912 0.89190 1.42359 1.61358 1.26814 1.07273 1.19228 1.26273 1.06281 0.85334 0.91272 1.24737 1.00725 0.97333 0.98144 1.69660 1.39907 1.13491 1.35209 0.86190 0.77336 0.77379 0.85312 1.21683 1.21718 1.20764 0.90066 0.88132 0.91888 0.84177 0.82294 0.82294 0.76380 0.91402 0.92386 0.92462 0.90076 0.91279 0.96438 0.96413 0.78299 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.84 36.00 0.32 -0.90 16 2 C 0.02 0.20 5.95 -103.91 -0.62 -0.42 16 3 C -0.19 -1.63 9.78 -39.49 -0.39 -2.02 16 4 C 0.12 1.12 11.17 -17.47 -0.20 0.93 16 5 N -0.49 -5.74 10.35 -12.91 -0.13 -5.87 16 6 C 0.14 1.60 10.70 -17.13 -0.18 1.42 16 7 C -0.19 -2.29 5.89 -104.82 -0.62 -2.91 16 8 C 0.56 7.52 7.69 -12.33 -0.09 7.43 16 9 O -0.53 -8.24 13.17 5.32 0.07 -8.17 16 10 N -0.71 -8.77 4.48 -54.75 -0.25 -9.02 16 11 C 0.15 1.90 2.57 -67.93 -0.17 1.72 16 12 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 13 C -0.16 -1.80 9.48 37.16 0.35 -1.45 16 14 C -0.14 -2.04 4.87 -26.73 -0.13 -2.17 16 15 C 0.15 3.04 6.15 -4.04 -0.02 3.02 16 16 N -0.73 -18.58 5.60 -59.91 -0.34 -18.91 16 17 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 21 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.10 1.23 5.97 -51.93 -0.31 0.92 16 27 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 28 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 30 H 0.16 1.50 6.47 -52.49 -0.34 1.16 16 31 H 0.40 4.35 6.71 -40.82 -0.27 4.08 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.38 10.10 7.67 -40.82 -0.31 9.79 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -33.24 335.57 -7.69 -40.93 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.80 Total: 8.77 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.00 Total: -2.78 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.01 Total: -61.37 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.07 Total: -8.17 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.24 -7.69 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272704586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.988 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds