Wall clock time and date at job start Mon Mar 30 2020 01:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38402 * 120.84790 * 2 1 4 4 C 1.38310 * 119.30098 * 179.97438 * 3 2 1 5 5 N 1.31956 * 121.08211 * 0.02562 * 4 3 2 6 6 C 1.31669 * 121.88075 * 359.97438 * 5 4 3 7 7 C 1.39561 * 120.56216 * 359.97150 * 6 5 4 8 8 C 1.47846 * 120.55929 * 180.02562 * 7 6 5 9 9 O 1.21549 * 120.00224 * 185.99736 * 8 7 6 10 10 N 1.34775 * 119.99820 * 5.99839 * 8 7 6 11 11 C 1.46503 * 120.00067 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46575 * 325.00065 * 11 10 8 13 13 C 1.53000 * 109.46802 * 85.00033 * 11 10 8 14 14 C 1.53002 * 109.47077 * 204.99848 * 11 10 8 15 15 C 1.52996 * 109.46876 * 65.00199 * 14 11 10 16 16 N 1.46502 * 109.46926 * 179.97438 * 15 14 11 17 17 C 1.36934 * 120.00095 * 179.97438 * 16 15 14 18 18 H 1.08008 * 120.00272 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00487 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99555 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00497 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47100 * 89.99514 * 21 19 17 23 23 H 1.48498 * 109.47082 * 209.99943 * 21 19 17 24 24 H 1.48504 * 109.46722 * 329.99348 * 21 19 17 25 25 H 1.09007 * 109.46974 * 96.54694 * 1 2 3 26 26 H 1.09004 * 109.46948 * 216.53352 * 1 2 3 27 27 H 1.09000 * 109.47843 * 336.53929 * 1 2 3 28 28 H 1.07995 * 120.35136 * 0.24546 * 3 2 1 29 29 H 1.08001 * 119.46065 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.71769 * 179.97438 * 6 5 4 31 31 H 0.97007 * 119.99835 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.46683 * 180.02562 * 13 11 10 33 33 H 1.08998 * 109.47462 * 300.00162 * 13 11 10 34 34 H 1.09000 * 109.47430 * 60.00069 * 13 11 10 35 35 H 1.09002 * 109.46474 * 184.99862 * 14 11 10 36 36 H 1.08995 * 109.46852 * 304.99929 * 14 11 10 37 37 H 1.08997 * 109.47248 * 299.99653 * 15 14 11 38 38 H 1.09003 * 109.47399 * 59.99587 * 15 14 11 39 39 H 0.96993 * 119.99953 * 0.02562 * 16 15 14 40 40 H 0.97000 * 119.99907 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1882 0.0000 4 6 3.5992 1.1509 0.0005 5 7 4.2497 0.0028 0.0005 6 6 3.6198 -1.1534 0.0005 7 6 2.2250 -1.2016 0.0011 8 6 1.5177 -2.4999 0.0017 9 8 0.3076 -2.5328 -0.1078 10 7 2.2147 -3.6469 0.1236 11 6 1.5139 -4.9334 0.1248 12 1 0.5512 -4.8222 0.6237 13 6 1.2908 -5.3939 -1.3172 14 6 2.3563 -5.9725 0.8674 15 6 2.4747 -5.5748 2.3401 16 7 3.2809 -6.5700 3.0513 17 6 3.5247 -6.4232 4.3908 18 1 3.1231 -5.5733 4.9228 19 6 4.2890 -7.3658 5.0647 20 7 4.7789 -8.4012 4.4162 21 14 4.6211 -7.1658 6.8920 22 1 3.5510 -7.8440 7.6667 23 1 5.9345 -7.7730 7.2258 24 1 4.6418 -5.7213 7.2360 25 1 -0.3633 -0.1172 -1.0210 26 1 -0.3633 -0.8258 0.6118 27 1 -0.3635 0.9427 0.4091 28 1 1.6964 2.1346 0.0040 29 1 4.1556 2.0766 0.0001 30 1 4.1872 -2.0723 0.0001 31 1 3.1805 -3.6206 0.2106 32 1 0.7690 -6.3509 -1.3163 33 1 0.6907 -4.6536 -1.8463 34 1 2.2535 -5.5050 -1.8161 35 1 1.8779 -6.9490 0.7921 36 1 3.3503 -6.0194 0.4227 37 1 2.9530 -4.5983 2.4154 38 1 1.4807 -5.5277 2.7848 39 1 3.6425 -7.3326 2.5733 40 1 5.3126 -9.0602 4.8871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272704586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:40 Heat of formation + Delta-G solvation = -22.444515 kcal Electronic energy + Delta-G solvation = -21001.149084 eV Core-core repulsion = 17814.850226 eV Total energy + Delta-G solvation = -3186.298858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79821 -40.18868 -37.91844 -36.19421 -34.74537 -33.87123 -32.92192 -31.42983 -29.42806 -28.80936 -25.98525 -25.49071 -23.65646 -23.10008 -22.11868 -21.59688 -19.31904 -18.75475 -17.75177 -17.21877 -16.97889 -16.69234 -16.21333 -15.88628 -15.50983 -15.27130 -15.10640 -14.82727 -14.64311 -14.28100 -13.80827 -13.68700 -13.56787 -13.46507 -13.11999 -13.00640 -12.89948 -12.78248 -12.37630 -12.27064 -12.01176 -11.92887 -11.64799 -11.08115 -10.95863 -10.62040 -10.39202 -10.25726 -10.02460 -9.02242 -7.97449 -5.26468 -0.37046 0.17410 1.46383 1.47815 1.56329 1.81657 2.10275 2.54271 2.80856 3.31151 3.36294 3.61869 3.64893 3.70951 3.83167 4.01791 4.05724 4.15474 4.37774 4.43743 4.55934 4.56307 4.64465 4.69041 4.76036 4.76355 4.83743 4.85778 4.99253 5.14993 5.19990 5.26843 5.32371 5.38705 5.46816 5.54792 5.62408 6.25333 6.46482 6.85273 7.13804 7.31956 8.06876 8.31162 9.25856 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.003893 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.653408 B = 7190.108114 C = 8076.195912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.003 3.997 3 C -0.177 4.177 4 C 0.120 3.880 5 N -0.516 5.516 6 C 0.135 3.865 7 C -0.210 4.210 8 C 0.562 3.438 9 O -0.560 6.560 10 N -0.709 5.709 11 C 0.153 3.847 12 H 0.074 0.926 13 C -0.152 4.152 14 C -0.120 4.120 15 C 0.153 3.847 16 N -0.745 5.745 17 C -0.250 4.250 18 H 0.070 0.930 19 C -0.071 4.071 20 N -0.967 5.967 21 Si 0.972 3.028 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.272 1.272 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.175 0.825 29 H 0.193 0.807 30 H 0.169 0.831 31 H 0.408 0.592 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.020 0.980 38 H 0.008 0.992 39 H 0.376 0.624 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.830 18.650 -13.902 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.005 4.005 3 C -0.196 4.196 4 C -0.035 4.035 5 N -0.225 5.225 6 C -0.024 4.024 7 C -0.215 4.215 8 C 0.350 3.650 9 O -0.441 6.441 10 N -0.361 5.361 11 C 0.049 3.951 12 H 0.092 0.908 13 C -0.211 4.211 14 C -0.158 4.158 15 C 0.027 3.973 16 N -0.388 5.388 17 C -0.382 4.382 18 H 0.088 0.912 19 C -0.263 4.263 20 N -0.617 5.617 21 Si 0.800 3.200 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.197 1.197 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.192 0.808 29 H 0.210 0.790 30 H 0.186 0.814 31 H 0.245 0.755 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.038 0.962 38 H 0.026 0.974 39 H 0.208 0.792 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.791 18.701 -13.815 23.961 hybrid contribution -0.022 -0.633 1.015 1.196 sum -5.812 18.069 -12.800 22.893 Atomic orbital electron populations 1.21019 0.88777 1.03872 1.03650 1.20787 0.98068 0.91841 0.89844 1.22419 0.95470 0.99196 1.02530 1.23594 0.92425 0.96882 0.90613 1.67760 1.41591 0.99017 1.14171 1.23185 0.90300 0.97337 0.91562 1.20900 0.95623 0.94198 1.10786 1.18244 0.86706 0.84102 0.75953 1.90702 1.14558 1.87550 1.51286 1.46036 1.11332 1.05456 1.73246 1.20871 0.95692 0.81542 0.97032 0.90823 1.22080 1.02648 1.01813 0.94512 1.21913 1.01115 0.98978 0.93760 1.20763 0.93031 0.91855 0.91651 1.42550 1.61900 1.27617 1.06767 1.19589 1.25694 1.06068 0.86829 0.91210 1.25535 1.01102 0.97302 1.02408 1.69801 1.40857 1.14303 1.36749 0.85173 0.76861 0.77705 0.80226 1.21357 1.21810 1.19658 0.90145 0.90774 0.89333 0.80773 0.79047 0.81398 0.75525 0.90353 0.92974 0.91215 0.89835 0.90267 0.96167 0.97434 0.79173 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.84 71.24 0.63 -1.60 16 2 C 0.00 0.06 5.95 -19.40 -0.12 -0.05 16 3 C -0.18 -2.61 9.78 22.33 0.22 -2.39 16 4 C 0.12 1.91 11.17 84.69 0.95 2.86 16 5 N -0.52 -11.28 10.35 -194.75 -2.01 -13.30 16 6 C 0.13 2.96 10.70 85.04 0.91 3.87 16 7 C -0.21 -4.94 5.89 -19.99 -0.12 -5.06 16 8 C 0.56 15.09 7.69 86.79 0.67 15.76 16 9 O -0.56 -17.65 13.17 -3.87 -0.05 -17.70 16 10 N -0.71 -17.29 4.48 -445.40 -2.00 -19.29 16 11 C 0.15 3.92 2.57 44.99 0.12 4.04 16 12 H 0.07 2.17 7.58 -2.39 -0.02 2.15 16 13 C -0.15 -3.23 9.48 71.98 0.68 -2.55 16 14 C -0.12 -3.51 4.87 30.59 0.15 -3.36 16 15 C 0.15 6.08 6.15 86.38 0.53 6.62 16 16 N -0.75 -37.94 5.60 -343.45 -1.92 -39.86 16 17 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 18 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 20 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 21 Si 0.97 46.38 29.55 68.60 2.03 48.40 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 25 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 26 H 0.07 1.84 5.97 -2.39 -0.01 1.83 16 27 H 0.09 1.17 8.06 -2.39 -0.02 1.15 16 28 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 29 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.17 3.11 6.47 -2.91 -0.02 3.09 16 31 H 0.41 8.66 6.71 -92.70 -0.62 8.04 16 32 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.02 0.80 7.75 -2.39 -0.02 0.78 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.38 19.99 7.67 -92.71 -0.71 19.28 16 40 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -71.27 335.57 1.97 -69.30 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -0.28 Total: 29.95 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.92 Total: 1.16 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -5.65 Total: -131.11 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.70 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -71.27 1.97 -69.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272704586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.859 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds