Wall clock time and date at job start Mon Mar 30 2020 01:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46510 * 109.45610 * 2 1 4 4 C 1.36935 * 119.99891 * 60.00498 * 3 2 1 5 5 H 1.08002 * 120.00352 * 359.97438 * 4 3 2 6 6 C 1.38809 * 119.99637 * 180.02562 * 4 3 2 7 7 N 1.31610 * 120.00411 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99728 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47084 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47384 * 299.99823 * 8 6 4 11 11 H 1.48506 * 109.46931 * 59.99993 * 8 6 4 12 12 C 1.53042 * 109.46277 * 119.97018 * 2 1 3 13 13 C 1.53160 * 109.32757 * 181.38587 * 12 2 1 14 14 N 1.46927 * 108.76863 * 305.36019 * 13 12 2 15 15 C 1.34773 * 120.62748 * 233.58454 * 14 13 12 16 16 O 1.21697 * 120.00189 * 173.24171 * 15 14 13 17 17 C 1.46683 * 120.00330 * 353.24502 * 15 14 13 18 18 C 1.37873 * 126.23192 * 156.56331 * 17 15 14 19 19 C 1.39837 * 107.08105 * 179.97438 * 18 17 15 20 20 C 1.35454 * 107.86815 * 0.02562 * 19 18 17 21 21 N 1.35540 * 108.86950 * 359.76052 * 20 19 18 22 22 H 0.96997 * 125.67694 * 180.26667 * 21 20 19 23 23 C 1.46922 * 118.73906 * 53.61036 * 14 13 12 24 24 C 1.53036 * 109.46106 * 240.03246 * 2 1 3 25 25 H 1.08991 * 109.47092 * 59.99832 * 1 2 3 26 26 H 1.08998 * 109.46608 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46948 * 299.99889 * 1 2 3 28 28 H 0.97001 * 119.99592 * 239.99665 * 3 2 1 29 29 H 0.96999 * 120.00777 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.49685 * 301.32541 * 12 2 1 31 31 H 1.09001 * 109.49404 * 61.42549 * 12 2 1 32 32 H 1.08998 * 109.59229 * 185.57293 * 13 12 2 33 33 H 1.09005 * 109.58877 * 65.14460 * 13 12 2 34 34 H 1.07997 * 126.46086 * 359.92912 * 18 17 15 35 35 H 1.08005 * 126.06657 * 180.02562 * 19 18 17 36 36 H 1.07999 * 125.56927 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.58689 * 186.60695 * 23 14 13 38 38 H 1.08996 * 109.59058 * 66.17880 * 23 14 13 39 39 H 1.09002 * 109.49323 * 298.57552 * 24 2 1 40 40 H 1.08997 * 109.50170 * 58.63879 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6871 2.2245 1.0271 5 1 1.0660 1.8712 1.8369 6 6 2.1490 3.5334 1.0268 7 7 2.9055 3.9642 0.0396 8 14 1.6970 4.6837 2.4275 9 1 2.3113 6.0152 2.1925 10 1 0.2202 4.8245 2.4955 11 1 2.2006 4.1258 3.7083 12 6 2.0400 -0.7208 1.2500 13 6 3.5712 -0.6888 1.2645 14 7 4.0677 -1.2492 0.0003 15 6 4.9617 -2.2576 0.0004 16 8 5.2726 -2.7954 -1.0461 17 6 5.5602 -2.7071 1.2619 18 6 6.1052 -3.9493 1.5083 19 6 6.5570 -3.9445 2.8316 20 6 6.2856 -2.7268 3.3590 21 7 5.6843 -1.9638 2.4138 22 1 5.3892 -1.0472 2.5302 23 6 3.5714 -0.6888 -1.2640 24 6 2.0399 -0.7208 -1.2500 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.5757 1.6988 -0.7275 29 1 3.2286 4.8787 0.0396 30 1 1.6575 -0.2207 2.1398 31 1 1.6978 -1.7557 1.2382 32 1 3.9413 -1.2848 2.0987 33 1 3.9142 0.3407 1.3676 34 1 6.1703 -4.7714 0.8109 35 1 7.0372 -4.7661 3.3426 36 1 6.5150 -2.4133 4.3667 37 1 3.9417 -1.2849 -2.0982 38 1 3.9145 0.3406 -1.3671 39 1 1.6977 -1.7556 -1.2382 40 1 1.6570 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274314880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:32 Heat of formation + Delta-G solvation = 37.484761 kcal Electronic energy + Delta-G solvation = -22432.712919 eV Core-core repulsion = 19249.012790 eV Total energy + Delta-G solvation = -3183.700129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40239 -39.44392 -37.67857 -34.60915 -32.49467 -31.43368 -30.60218 -29.39636 -28.91811 -27.60743 -24.16810 -23.41884 -23.11988 -21.32755 -20.66481 -19.98214 -18.71436 -17.33881 -17.14693 -16.20193 -15.34369 -15.27329 -14.74462 -14.08797 -13.89085 -13.82197 -13.75347 -13.43608 -13.35480 -12.99768 -12.55478 -12.48020 -12.25520 -12.05161 -11.59165 -11.35564 -11.28062 -10.96771 -10.85343 -10.79563 -10.37017 -10.36573 -9.77341 -9.73501 -9.57794 -9.04313 -8.92487 -8.41269 -8.09836 -7.04917 -5.85453 -3.14324 1.61848 2.76231 3.09247 3.23973 3.34524 3.40625 3.42064 3.59992 4.49769 4.72100 5.05664 5.07459 5.29851 5.33344 5.36466 5.46255 5.49589 5.52314 5.66047 5.74744 5.93775 5.97817 6.08348 6.10736 6.14653 6.21497 6.32827 6.39587 6.42389 6.47347 6.65508 6.77351 6.80990 6.92045 6.96220 7.02628 7.38697 7.61866 7.68008 8.32692 8.35568 9.44277 10.01195 10.36929 11.36825 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.005680 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.723375 B = 4928.647225 C = 5658.858695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.197 3.803 3 N -0.717 5.717 4 C -0.235 4.235 5 H 0.070 0.930 6 C -0.011 4.011 7 N -0.932 5.932 8 Si 0.902 3.098 9 H -0.292 1.292 10 H -0.287 1.287 11 H -0.288 1.288 12 C -0.132 4.132 13 C 0.098 3.902 14 N -0.598 5.598 15 C 0.584 3.416 16 O -0.543 6.543 17 C -0.043 4.043 18 C -0.119 4.119 19 C -0.213 4.213 20 C 0.011 3.989 21 N -0.538 5.538 22 H 0.424 0.576 23 C 0.117 3.883 24 C -0.129 4.129 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.384 0.616 29 H 0.256 0.744 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.169 0.831 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.930 -12.245 4.855 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.106 3.894 3 N -0.359 5.359 4 C -0.366 4.366 5 H 0.088 0.912 6 C -0.207 4.207 7 N -0.580 5.580 8 Si 0.733 3.267 9 H -0.218 1.218 10 H -0.213 1.213 11 H -0.215 1.215 12 C -0.172 4.172 13 C -0.025 4.025 14 N -0.330 5.330 15 C 0.373 3.627 16 O -0.421 6.421 17 C -0.156 4.156 18 C -0.146 4.146 19 C -0.238 4.238 20 C -0.125 4.125 21 N -0.139 5.139 22 H 0.267 0.733 23 C -0.005 4.005 24 C -0.168 4.168 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.186 0.814 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.966 -12.219 4.401 13.322 hybrid contribution -0.298 1.376 0.847 1.643 sum 2.668 -10.843 5.248 12.338 Atomic orbital electron populations 1.22210 0.97465 0.99068 1.02159 1.19537 0.92226 0.86210 0.91455 1.42514 1.60666 1.05717 1.26995 1.19068 1.25588 0.91702 1.00236 0.91249 1.24698 1.00584 0.97309 0.98134 1.69631 1.39153 1.16924 1.32267 0.86357 0.77931 0.80578 0.81805 1.21794 1.21340 1.21451 1.22267 0.94017 0.99430 1.01515 1.22119 0.96330 0.99780 0.84231 1.48021 1.42236 1.34382 1.08397 1.17166 0.79071 0.79407 0.87051 1.90788 1.63331 1.56207 1.31805 1.20467 1.12524 0.94608 0.87995 1.21247 1.00865 0.95718 0.96737 1.20845 1.09272 0.98007 0.95632 1.22068 1.02555 0.92661 0.95170 1.42888 1.46289 1.14531 1.10190 0.73309 1.21607 0.94256 0.99299 0.85332 1.22084 0.94876 1.00495 0.99322 0.93053 0.94539 0.92575 0.78124 0.93454 0.90614 0.93126 0.91071 0.89071 0.83856 0.84215 0.81416 0.89639 0.90358 0.91810 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.44 37.16 0.31 -2.26 16 2 C 0.20 3.52 0.74 -131.77 -0.10 3.42 16 3 N -0.72 -15.78 4.13 -47.19 -0.20 -15.97 16 4 C -0.23 -5.79 8.68 -15.06 -0.13 -5.92 16 5 H 0.07 1.67 6.70 -52.49 -0.35 1.32 16 6 C -0.01 -0.29 5.50 -17.44 -0.10 -0.39 16 7 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 8 Si 0.90 21.07 29.55 -169.99 -5.02 16.05 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 C -0.13 -2.16 4.70 -26.63 -0.13 -2.28 16 13 C 0.10 1.54 5.06 -3.73 -0.02 1.52 16 14 N -0.60 -9.91 2.97 -174.33 -0.52 -10.42 16 15 C 0.58 10.14 7.62 -12.85 -0.10 10.05 16 16 O -0.54 -10.86 16.39 5.19 0.09 -10.77 16 17 C -0.04 -0.64 6.38 -81.98 -0.52 -1.16 16 18 C -0.12 -1.64 10.73 -39.12 -0.42 -2.06 16 19 C -0.21 -2.40 10.81 -39.98 -0.43 -2.84 16 20 C 0.01 0.12 11.89 -16.91 -0.20 -0.08 16 21 N -0.54 -6.61 4.75 -9.39 -0.04 -6.65 16 22 H 0.42 4.81 6.39 -40.82 -0.26 4.55 16 23 C 0.12 1.97 6.17 -3.71 -0.02 1.95 16 24 C -0.13 -2.08 4.96 -26.61 -0.13 -2.22 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.03 7.27 -51.93 -0.38 0.65 16 28 H 0.38 9.23 6.46 -40.82 -0.26 8.97 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.08 1.29 7.31 -51.93 -0.38 0.91 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.96 4.20 -51.93 -0.22 0.75 16 33 H 0.09 1.64 7.74 -51.93 -0.40 1.24 16 34 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 38 H 0.08 1.43 6.94 -51.93 -0.36 1.07 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -29.68 317.07 -7.67 -37.36 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.49 Total: 13.52 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.98 Total: -2.27 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.03 Total: -58.66 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.68 -7.67 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274314880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.841 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds