Wall clock time and date at job start Mon Mar 30 2020 01:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46510 * 109.45610 * 2 1 4 4 C 1.36935 * 119.99891 * 60.00498 * 3 2 1 5 5 H 1.08002 * 120.00352 * 359.97438 * 4 3 2 6 6 C 1.38809 * 119.99637 * 180.02562 * 4 3 2 7 7 N 1.31610 * 120.00411 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99728 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47084 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47384 * 299.99823 * 8 6 4 11 11 H 1.48506 * 109.46931 * 59.99993 * 8 6 4 12 12 C 1.53042 * 109.46277 * 119.97018 * 2 1 3 13 13 C 1.53160 * 109.32757 * 181.38587 * 12 2 1 14 14 N 1.46927 * 108.76863 * 305.36019 * 13 12 2 15 15 C 1.34773 * 120.62748 * 233.58454 * 14 13 12 16 16 O 1.21697 * 120.00189 * 173.24171 * 15 14 13 17 17 C 1.46683 * 120.00330 * 353.24502 * 15 14 13 18 18 C 1.37873 * 126.23192 * 156.56331 * 17 15 14 19 19 C 1.39837 * 107.08105 * 179.97438 * 18 17 15 20 20 C 1.35454 * 107.86815 * 0.02562 * 19 18 17 21 21 N 1.35540 * 108.86950 * 359.76052 * 20 19 18 22 22 H 0.96997 * 125.67694 * 180.26667 * 21 20 19 23 23 C 1.46922 * 118.73906 * 53.61036 * 14 13 12 24 24 C 1.53036 * 109.46106 * 240.03246 * 2 1 3 25 25 H 1.08991 * 109.47092 * 59.99832 * 1 2 3 26 26 H 1.08998 * 109.46608 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46948 * 299.99889 * 1 2 3 28 28 H 0.97001 * 119.99592 * 239.99665 * 3 2 1 29 29 H 0.96999 * 120.00777 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.49685 * 301.32541 * 12 2 1 31 31 H 1.09001 * 109.49404 * 61.42549 * 12 2 1 32 32 H 1.08998 * 109.59229 * 185.57293 * 13 12 2 33 33 H 1.09005 * 109.58877 * 65.14460 * 13 12 2 34 34 H 1.07997 * 126.46086 * 359.92912 * 18 17 15 35 35 H 1.08005 * 126.06657 * 180.02562 * 19 18 17 36 36 H 1.07999 * 125.56927 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.58689 * 186.60695 * 23 14 13 38 38 H 1.08996 * 109.59058 * 66.17880 * 23 14 13 39 39 H 1.09002 * 109.49323 * 298.57552 * 24 2 1 40 40 H 1.08997 * 109.50170 * 58.63879 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6871 2.2245 1.0271 5 1 1.0660 1.8712 1.8369 6 6 2.1490 3.5334 1.0268 7 7 2.9055 3.9642 0.0396 8 14 1.6970 4.6837 2.4275 9 1 2.3113 6.0152 2.1925 10 1 0.2202 4.8245 2.4955 11 1 2.2006 4.1258 3.7083 12 6 2.0400 -0.7208 1.2500 13 6 3.5712 -0.6888 1.2645 14 7 4.0677 -1.2492 0.0003 15 6 4.9617 -2.2576 0.0004 16 8 5.2726 -2.7954 -1.0461 17 6 5.5602 -2.7071 1.2619 18 6 6.1052 -3.9493 1.5083 19 6 6.5570 -3.9445 2.8316 20 6 6.2856 -2.7268 3.3590 21 7 5.6843 -1.9638 2.4138 22 1 5.3892 -1.0472 2.5302 23 6 3.5714 -0.6888 -1.2640 24 6 2.0399 -0.7208 -1.2500 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.5757 1.6988 -0.7275 29 1 3.2286 4.8787 0.0396 30 1 1.6575 -0.2207 2.1398 31 1 1.6978 -1.7557 1.2382 32 1 3.9413 -1.2848 2.0987 33 1 3.9142 0.3407 1.3676 34 1 6.1703 -4.7714 0.8109 35 1 7.0372 -4.7661 3.3426 36 1 6.5150 -2.4133 4.3667 37 1 3.9417 -1.2849 -2.0982 38 1 3.9145 0.3406 -1.3671 39 1 1.6977 -1.7556 -1.2382 40 1 1.6570 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274314880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:32 Heat of formation + Delta-G solvation = 19.244712 kcal Electronic energy + Delta-G solvation = -22433.503867 eV Core-core repulsion = 19249.012790 eV Total energy + Delta-G solvation = -3184.491077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.45512 -40.73012 -39.11265 -36.12926 -34.24984 -32.65920 -31.72005 -30.94693 -30.26037 -28.91052 -25.92738 -24.80871 -24.46029 -22.55966 -21.69040 -20.99964 -20.11452 -19.05561 -18.60058 -17.47764 -16.66002 -16.56530 -16.31417 -15.69104 -15.46985 -15.05168 -14.94964 -14.65606 -14.62514 -14.34251 -14.07276 -13.61997 -13.36663 -13.19359 -13.15488 -12.82712 -12.71424 -12.66506 -12.56916 -12.22003 -12.14293 -11.85776 -11.49611 -11.17482 -11.09199 -10.84153 -9.93015 -9.74674 -9.14449 -8.90713 -7.86097 -5.12382 0.51086 1.49583 1.51728 1.56823 1.81607 1.90257 2.14801 2.44967 2.60565 3.47459 3.52627 3.79868 3.84602 3.97792 4.14550 4.23209 4.33518 4.35994 4.44763 4.51282 4.57442 4.62179 4.73061 4.84077 4.96441 5.00064 5.05387 5.10390 5.14202 5.24429 5.30759 5.34285 5.52966 5.60526 5.65748 5.81115 5.97997 6.34949 6.36927 6.50579 7.03376 7.42765 8.18146 8.42540 9.37245 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.005680 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.723375 B = 4928.647225 C = 5658.858695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.188 3.812 3 N -0.723 5.723 4 C -0.212 4.212 5 H 0.078 0.922 6 C -0.074 4.074 7 N -0.971 5.971 8 Si 0.958 3.042 9 H -0.306 1.306 10 H -0.285 1.285 11 H -0.277 1.277 12 C -0.127 4.127 13 C 0.106 3.894 14 N -0.598 5.598 15 C 0.581 3.419 16 O -0.580 6.580 17 C -0.081 4.081 18 C -0.123 4.123 19 C -0.220 4.220 20 C 0.034 3.966 21 N -0.538 5.538 22 H 0.427 0.573 23 C 0.119 3.881 24 C -0.120 4.120 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.371 0.629 29 H 0.246 0.754 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.141 0.859 35 H 0.167 0.833 36 H 0.211 0.789 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 -13.932 7.216 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.099 3.901 3 N -0.363 5.363 4 C -0.344 4.344 5 H 0.096 0.904 6 C -0.266 4.266 7 N -0.622 5.622 8 Si 0.789 3.211 9 H -0.233 1.233 10 H -0.211 1.211 11 H -0.203 1.203 12 C -0.167 4.167 13 C -0.016 4.016 14 N -0.329 5.329 15 C 0.372 3.628 16 O -0.461 6.461 17 C -0.193 4.193 18 C -0.151 4.151 19 C -0.244 4.244 20 C -0.102 4.102 21 N -0.139 5.139 22 H 0.270 0.730 23 C -0.003 4.003 24 C -0.158 4.158 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.204 0.796 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.185 0.815 36 H 0.227 0.773 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.654 -13.945 6.795 15.738 hybrid contribution -0.191 1.765 0.149 1.782 sum 2.463 -12.179 6.944 14.235 Atomic orbital electron populations 1.22128 0.96434 1.00662 1.01069 1.19827 0.92846 0.84354 0.93108 1.42665 1.60443 1.07262 1.25963 1.19382 1.23260 0.91594 1.00193 0.90414 1.25335 1.01873 0.99053 1.00307 1.69790 1.41521 1.16546 1.34374 0.85437 0.77404 0.78293 0.79969 1.23304 1.21140 1.20296 1.22196 0.94191 1.00138 1.00167 1.22044 0.96028 0.98778 0.84758 1.48039 1.42194 1.34255 1.08401 1.17539 0.78630 0.78939 0.87664 1.90752 1.64489 1.57496 1.33345 1.20192 1.15205 0.95775 0.88172 1.21496 1.00265 0.95244 0.98061 1.21202 1.09286 0.99324 0.94551 1.22818 0.99570 0.91783 0.96048 1.42888 1.46510 1.14695 1.09814 0.72996 1.21488 0.94905 0.98056 0.85847 1.22010 0.94032 1.01155 0.98633 0.94008 0.91612 0.93770 0.79580 0.94558 0.90976 0.91206 0.88499 0.91655 0.84141 0.81549 0.77281 0.89819 0.92453 0.90126 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 8.44 71.98 0.61 -4.06 16 2 C 0.19 6.51 0.74 3.63 0.00 6.51 16 3 N -0.72 -31.86 4.13 -303.21 -1.25 -33.12 16 4 C -0.21 -10.39 8.68 84.03 0.73 -9.66 16 5 H 0.08 3.64 6.70 -2.91 -0.02 3.62 16 6 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 7 N -0.97 -56.28 13.06 21.65 0.28 -56.00 16 8 Si 0.96 43.51 29.55 68.60 2.03 45.54 16 9 H -0.31 -14.50 7.11 99.48 0.71 -13.80 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 12 C -0.13 -3.90 4.70 30.66 0.14 -3.75 16 13 C 0.11 3.23 5.06 86.35 0.44 3.67 16 14 N -0.60 -19.66 2.97 -823.67 -2.45 -22.11 16 15 C 0.58 20.16 7.62 86.45 0.66 20.82 16 16 O -0.58 -23.59 16.39 -4.34 -0.07 -23.66 16 17 C -0.08 -2.33 6.38 40.35 0.26 -2.08 16 18 C -0.12 -3.20 10.73 22.57 0.24 -2.96 16 19 C -0.22 -4.22 10.81 22.01 0.24 -3.98 16 20 C 0.03 0.57 11.89 83.48 0.99 1.57 16 21 N -0.54 -11.93 4.75 -183.61 -0.87 -12.80 16 22 H 0.43 8.80 6.39 -92.71 -0.59 8.21 16 23 C 0.12 4.08 6.17 86.36 0.53 4.61 16 24 C -0.12 -3.76 4.96 30.67 0.15 -3.61 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.52 7.27 -2.38 -0.02 1.51 16 28 H 0.37 18.29 6.46 -92.71 -0.60 17.69 16 29 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.07 2.29 7.31 -2.39 -0.02 2.27 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.10 2.44 4.20 -2.39 -0.01 2.43 16 33 H 0.07 2.35 7.74 -2.38 -0.02 2.33 16 34 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.21 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.08 2.88 7.00 -2.38 -0.02 2.86 16 38 H 0.06 2.19 6.94 -2.39 -0.02 2.18 16 39 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -64.86 317.07 3.00 -61.86 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.13 Total: 36.66 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.46 Total: 3.63 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -4.29 Total: -124.03 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.66 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -64.86 3.00 -61.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274314880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.105 kcal (2) G-P(sol) polarization free energy of solvation -64.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds