Wall clock time and date at job start Mon Mar 30 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42070 * 2 1 4 4 N 1.31855 * 120.76539 * 179.72908 * 3 2 1 5 5 C 1.31886 * 121.72176 * 0.58520 * 4 3 2 6 6 C 1.38179 * 120.76799 * 359.68222 * 5 4 3 7 7 C 1.38630 * 120.42049 * 180.28399 * 2 1 3 8 8 C 1.50702 * 120.78722 * 359.95311 * 7 2 1 9 9 C 1.50701 * 109.47311 * 85.00348 * 8 7 2 10 10 O 1.21281 * 119.99473 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00208 * 180.02562 * 9 8 7 12 12 C 1.46492 * 119.99915 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47756 * 34.99280 * 12 11 9 14 14 C 1.53000 * 109.47280 * 274.99211 * 12 11 9 15 15 C 1.53001 * 109.47040 * 154.99566 * 12 11 9 16 16 N 1.46500 * 109.47236 * 304.99772 * 15 12 11 17 17 C 1.36935 * 120.00040 * 179.97438 * 16 15 12 18 18 H 1.08002 * 120.00255 * 0.02562 * 17 16 15 19 19 C 1.38818 * 119.99981 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99620 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00113 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47090 * 90.00414 * 21 19 17 23 23 H 1.48497 * 109.47364 * 210.00576 * 21 19 17 24 24 H 1.48500 * 109.47165 * 330.00809 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.71769 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.71869 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.71850 * 1 2 3 28 28 H 1.08005 * 119.61789 * 0.03134 * 3 2 1 29 29 H 1.07997 * 119.61697 * 179.70405 * 5 4 3 30 30 H 1.08004 * 120.42114 * 180.02562 * 6 5 4 31 31 H 1.09003 * 109.47237 * 205.00216 * 8 7 2 32 32 H 1.08998 * 109.47123 * 324.99942 * 8 7 2 33 33 H 0.97003 * 119.99602 * 359.97438 * 11 9 8 34 34 H 1.09006 * 109.46875 * 59.99926 * 14 12 11 35 35 H 1.08999 * 109.47496 * 179.97438 * 14 12 11 36 36 H 1.09004 * 109.47288 * 300.00684 * 14 12 11 37 37 H 1.09003 * 109.47482 * 65.00140 * 15 12 11 38 38 H 1.09004 * 109.47011 * 184.99977 * 15 12 11 39 39 H 0.96995 * 119.99756 * 359.97438 * 16 15 12 40 40 H 0.97001 * 119.99386 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 0.0054 5 6 4.2257 0.0823 -0.0006 6 6 3.5948 -1.1471 -0.0061 7 6 2.2090 -1.1954 -0.0059 8 6 1.4831 -2.5161 -0.0114 9 6 1.1317 -2.8904 -1.4283 10 8 1.4399 -2.1566 -2.3434 11 7 0.4741 -4.0399 -1.6783 12 6 0.1330 -4.4039 -3.0557 13 1 0.9239 -4.0687 -3.7267 14 6 -1.1861 -3.7355 -3.4482 15 6 -0.0144 -5.9232 -3.1601 16 7 1.2073 -6.5672 -2.6712 17 6 1.3072 -7.9329 -2.6680 18 1 0.4856 -8.5353 -3.0262 19 6 2.4651 -8.5430 -2.2053 20 7 3.4666 -7.8088 -1.7692 21 14 2.6012 -10.4060 -2.2002 22 1 3.1729 -10.8641 -3.4919 23 1 3.4861 -10.8347 -1.0874 24 1 1.2526 -11.0003 -2.0173 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 -0.8875 -0.5182 27 1 -0.3633 0.8925 -0.5095 28 1 1.6675 2.1277 0.0005 29 1 5.3046 0.1285 -0.0007 30 1 4.1738 -2.0588 -0.0106 31 1 2.1247 -3.2851 0.4190 32 1 0.5708 -2.4318 0.5791 33 1 0.2273 -4.6266 -0.9463 34 1 -1.0811 -2.6530 -3.3738 35 1 -1.4396 -4.0059 -4.4732 36 1 -1.9770 -4.0707 -2.7772 37 1 -0.8626 -6.2483 -2.5575 38 1 -0.1803 -6.2015 -4.2009 39 1 1.9454 -6.0261 -2.3499 40 1 4.2755 -8.2352 -1.4455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274752415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:16 Heat of formation + Delta-G solvation = -3.687396 kcal Electronic energy + Delta-G solvation = -21247.789775 eV Core-core repulsion = 18062.304287 eV Total energy + Delta-G solvation = -3185.485488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55172 -39.26688 -36.27321 -34.31614 -33.66872 -32.46493 -31.44077 -30.10782 -28.50276 -27.10124 -25.71276 -23.15455 -22.64915 -21.98982 -20.71448 -20.06413 -17.36516 -16.86481 -16.73816 -16.59071 -15.64294 -15.09108 -14.88159 -14.67302 -14.25658 -13.72592 -13.56176 -13.42788 -13.33545 -12.81841 -12.80092 -12.65371 -12.33467 -12.29950 -12.19130 -11.95423 -11.61971 -11.34485 -10.95516 -10.86025 -10.50941 -10.09809 -9.85120 -9.79437 -9.45725 -9.32799 -8.96782 -8.88309 -8.73491 -7.01707 -5.83708 -3.13459 1.14753 1.24340 2.87434 3.38660 3.43133 3.44779 3.45750 3.86835 4.43864 4.52311 4.52692 4.69331 4.90184 4.94704 5.03279 5.24248 5.29706 5.41928 5.44040 5.46362 5.47700 5.49392 5.60512 5.63174 5.77764 5.90537 5.97740 6.04286 6.08097 6.14447 6.34019 6.35582 6.43708 6.65573 6.73029 6.90708 7.63056 7.81720 7.98252 8.34392 8.49789 9.46356 10.01900 10.37432 11.38733 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021308 B = 0.004066 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.745770 B = 6885.374831 C = 7848.602785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.124 4.124 3 C 0.094 3.906 4 N -0.487 5.487 5 C 0.090 3.910 6 C -0.154 4.154 7 C -0.017 4.017 8 C -0.110 4.110 9 C 0.519 3.481 10 O -0.540 6.540 11 N -0.710 5.710 12 C 0.134 3.866 13 H 0.086 0.914 14 C -0.157 4.157 15 C 0.144 3.856 16 N -0.732 5.732 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.404 0.596 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.033 0.967 39 H 0.386 0.614 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.044 14.264 5.636 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.126 4.126 3 C -0.063 4.063 4 N -0.195 5.195 5 C -0.066 4.066 6 C -0.174 4.174 7 C -0.025 4.025 8 C -0.150 4.150 9 C 0.304 3.696 10 O -0.418 6.418 11 N -0.362 5.362 12 C 0.029 3.971 13 H 0.104 0.896 14 C -0.216 4.216 15 C 0.016 3.984 16 N -0.377 5.377 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.169 0.831 29 H 0.172 0.828 30 H 0.154 0.846 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.239 0.761 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.220 0.780 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.414 15.401 4.954 17.404 hybrid contribution -0.072 -2.140 0.393 2.177 sum -6.486 13.262 5.348 15.702 Atomic orbital electron populations 1.20730 0.90519 1.03374 1.02131 1.20712 0.97377 0.93617 1.00852 1.22552 0.89981 0.97119 0.96659 1.67617 1.08312 1.31520 1.12097 1.22657 1.00239 0.87586 0.96138 1.22084 0.94499 1.00014 1.00764 1.19579 0.93544 0.93764 0.95610 1.20740 1.02439 0.95709 0.96096 1.20224 0.77546 0.81403 0.90439 1.90709 1.53548 1.51139 1.46365 1.45982 1.58179 1.22096 1.09901 1.21233 0.97113 0.95778 0.82987 0.89616 1.22096 0.97082 1.00795 1.01589 1.20985 0.91200 0.88370 0.97837 1.42353 1.14550 1.04118 1.76653 1.19226 0.99829 0.82807 1.35640 0.91127 1.24746 0.96407 0.97879 1.01709 1.69663 1.05849 1.33978 1.48491 0.86186 0.77335 0.85385 0.77230 1.21679 1.21747 1.20740 0.90963 0.91344 0.91156 0.83124 0.82843 0.84563 0.87107 0.87702 0.76095 0.92511 0.91678 0.92576 0.95767 0.94914 0.78027 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.30 36.01 0.33 -0.71 16 2 C -0.12 -1.50 5.90 -104.48 -0.62 -2.12 16 3 C 0.09 1.16 10.86 -17.55 -0.19 0.97 16 4 N -0.49 -6.72 10.36 -13.25 -0.14 -6.85 16 5 C 0.09 1.15 11.18 -17.55 -0.20 0.96 16 6 C -0.15 -2.01 9.80 -39.44 -0.39 -2.40 16 7 C -0.02 -0.22 4.41 -104.32 -0.46 -0.68 16 8 C -0.11 -1.32 5.19 -29.03 -0.15 -1.47 16 9 C 0.52 7.98 7.11 -10.99 -0.08 7.90 16 10 O -0.54 -10.25 15.70 5.56 0.09 -10.16 16 11 N -0.71 -10.71 4.52 -53.81 -0.24 -10.95 16 12 C 0.13 2.18 2.73 -67.93 -0.19 1.99 16 13 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 14 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 15 C 0.14 2.73 5.82 -4.04 -0.02 2.70 16 16 N -0.73 -17.72 5.43 -59.90 -0.33 -18.05 16 17 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 21 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.71 6.35 -51.93 -0.33 0.38 16 27 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 31 H 0.11 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.10 0.97 7.11 -51.93 -0.37 0.60 16 33 H 0.40 5.65 8.60 -40.82 -0.35 5.30 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.39 9.95 7.33 -40.82 -0.30 9.65 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -33.15 339.52 -7.58 -40.73 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.93 Total: 11.77 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.85 Total: -1.73 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.02 Total: -62.57 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.15 -7.58 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274752415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.045 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds