Wall clock time and date at job start Mon Mar 30 2020 02:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42070 * 2 1 4 4 N 1.31855 * 120.76539 * 179.72908 * 3 2 1 5 5 C 1.31886 * 121.72176 * 0.58520 * 4 3 2 6 6 C 1.38179 * 120.76799 * 359.68222 * 5 4 3 7 7 C 1.38630 * 120.42049 * 180.28399 * 2 1 3 8 8 C 1.50702 * 120.78722 * 359.95311 * 7 2 1 9 9 C 1.50701 * 109.47311 * 85.00348 * 8 7 2 10 10 O 1.21281 * 119.99473 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00208 * 180.02562 * 9 8 7 12 12 C 1.46492 * 119.99915 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47756 * 34.99280 * 12 11 9 14 14 C 1.53000 * 109.47280 * 274.99211 * 12 11 9 15 15 C 1.53001 * 109.47040 * 154.99566 * 12 11 9 16 16 N 1.46500 * 109.47236 * 304.99772 * 15 12 11 17 17 C 1.36935 * 120.00040 * 179.97438 * 16 15 12 18 18 H 1.08002 * 120.00255 * 0.02562 * 17 16 15 19 19 C 1.38818 * 119.99981 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99620 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00113 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47090 * 90.00414 * 21 19 17 23 23 H 1.48497 * 109.47364 * 210.00576 * 21 19 17 24 24 H 1.48500 * 109.47165 * 330.00809 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.71769 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.71869 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.71850 * 1 2 3 28 28 H 1.08005 * 119.61789 * 0.03134 * 3 2 1 29 29 H 1.07997 * 119.61697 * 179.70405 * 5 4 3 30 30 H 1.08004 * 120.42114 * 180.02562 * 6 5 4 31 31 H 1.09003 * 109.47237 * 205.00216 * 8 7 2 32 32 H 1.08998 * 109.47123 * 324.99942 * 8 7 2 33 33 H 0.97003 * 119.99602 * 359.97438 * 11 9 8 34 34 H 1.09006 * 109.46875 * 59.99926 * 14 12 11 35 35 H 1.08999 * 109.47496 * 179.97438 * 14 12 11 36 36 H 1.09004 * 109.47288 * 300.00684 * 14 12 11 37 37 H 1.09003 * 109.47482 * 65.00140 * 15 12 11 38 38 H 1.09004 * 109.47011 * 184.99977 * 15 12 11 39 39 H 0.96995 * 119.99756 * 359.97438 * 16 15 12 40 40 H 0.97001 * 119.99386 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 0.0054 5 6 4.2257 0.0823 -0.0006 6 6 3.5948 -1.1471 -0.0061 7 6 2.2090 -1.1954 -0.0059 8 6 1.4831 -2.5161 -0.0114 9 6 1.1317 -2.8904 -1.4283 10 8 1.4399 -2.1566 -2.3434 11 7 0.4741 -4.0399 -1.6783 12 6 0.1330 -4.4039 -3.0557 13 1 0.9239 -4.0687 -3.7267 14 6 -1.1861 -3.7355 -3.4482 15 6 -0.0144 -5.9232 -3.1601 16 7 1.2073 -6.5672 -2.6712 17 6 1.3072 -7.9329 -2.6680 18 1 0.4856 -8.5353 -3.0262 19 6 2.4651 -8.5430 -2.2053 20 7 3.4666 -7.8088 -1.7692 21 14 2.6012 -10.4060 -2.2002 22 1 3.1729 -10.8641 -3.4919 23 1 3.4861 -10.8347 -1.0874 24 1 1.2526 -11.0003 -2.0173 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 -0.8875 -0.5182 27 1 -0.3633 0.8925 -0.5095 28 1 1.6675 2.1277 0.0005 29 1 5.3046 0.1285 -0.0007 30 1 4.1738 -2.0588 -0.0106 31 1 2.1247 -3.2851 0.4190 32 1 0.5708 -2.4318 0.5791 33 1 0.2273 -4.6266 -0.9463 34 1 -1.0811 -2.6530 -3.3738 35 1 -1.4396 -4.0059 -4.4732 36 1 -1.9770 -4.0707 -2.7772 37 1 -0.8626 -6.2483 -2.5575 38 1 -0.1803 -6.2015 -4.2009 39 1 1.9454 -6.0261 -2.3499 40 1 4.2755 -8.2352 -1.4455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274752415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:15 Heat of formation + Delta-G solvation = -26.310775 kcal Electronic energy + Delta-G solvation = -21248.770798 eV Core-core repulsion = 18062.304287 eV Total energy + Delta-G solvation = -3186.466511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56848 -40.45167 -37.73451 -35.49319 -35.25671 -33.42168 -33.01188 -31.66566 -29.50474 -27.96187 -27.40698 -24.62313 -23.96443 -23.04979 -21.96049 -21.29733 -19.23657 -18.13880 -17.73073 -17.68999 -16.90706 -16.61360 -16.02617 -15.91499 -15.48992 -15.24541 -15.14455 -14.70229 -14.28919 -14.00594 -13.77978 -13.67228 -13.59253 -13.57376 -13.32213 -13.02816 -12.90024 -12.79697 -12.60473 -12.25831 -12.14952 -11.89478 -11.69292 -11.09025 -10.94706 -10.42492 -10.38478 -10.02313 -9.79013 -9.01306 -7.94839 -5.24104 0.21260 0.26050 1.48968 1.50175 1.58373 1.66966 2.27520 2.56365 2.88706 3.39951 3.50998 3.62371 3.77350 3.80746 3.99485 4.03079 4.08734 4.10821 4.31105 4.42070 4.50735 4.53450 4.57617 4.75120 4.80476 4.81331 4.87804 4.89900 4.95112 5.08251 5.13666 5.22166 5.31616 5.41577 5.51007 5.60933 5.81709 6.26343 6.61212 7.02890 7.29439 7.33928 8.07290 8.31130 9.28253 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021308 B = 0.004066 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.745770 B = 6885.374831 C = 7848.602785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.128 4.128 3 C 0.084 3.916 4 N -0.508 5.508 5 C 0.078 3.922 6 C -0.170 4.170 7 C -0.034 4.034 8 C -0.101 4.101 9 C 0.518 3.482 10 O -0.580 6.580 11 N -0.706 5.706 12 C 0.141 3.859 13 H 0.054 0.946 14 C -0.145 4.145 15 C 0.145 3.855 16 N -0.744 5.744 17 C -0.245 4.245 18 H 0.079 0.921 19 C -0.071 4.071 20 N -0.968 5.968 21 Si 0.971 3.029 22 H -0.292 1.292 23 H -0.296 1.296 24 H -0.267 1.267 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.177 0.823 29 H 0.172 0.828 30 H 0.139 0.861 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.411 0.589 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.035 0.965 39 H 0.374 0.626 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.997 14.165 6.194 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.130 4.130 3 C -0.073 4.073 4 N -0.217 5.217 5 C -0.078 4.078 6 C -0.190 4.190 7 C -0.043 4.043 8 C -0.141 4.141 9 C 0.305 3.695 10 O -0.460 6.460 11 N -0.358 5.358 12 C 0.036 3.964 13 H 0.072 0.928 14 C -0.204 4.204 15 C 0.018 3.982 16 N -0.387 5.387 17 C -0.377 4.377 18 H 0.097 0.903 19 C -0.264 4.264 20 N -0.618 5.618 21 Si 0.801 3.199 22 H -0.219 1.219 23 H -0.223 1.223 24 H -0.191 1.191 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.194 0.806 29 H 0.189 0.811 30 H 0.157 0.843 31 H 0.135 0.865 32 H 0.155 0.845 33 H 0.247 0.753 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.206 0.794 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.424 15.292 5.510 18.307 hybrid contribution 0.485 -2.064 0.171 2.127 sum -7.939 13.228 5.681 16.440 Atomic orbital electron populations 1.20782 0.88484 1.03523 1.03675 1.21047 0.98923 0.93163 0.99832 1.23038 0.89791 0.98392 0.96112 1.67649 1.09251 1.31960 1.12837 1.22988 1.01285 0.87426 0.96100 1.22268 0.95042 1.00360 1.01292 1.19821 0.93742 0.94617 0.96088 1.20741 1.03895 0.95390 0.94045 1.20756 0.76531 0.80775 0.91438 1.90689 1.55053 1.52354 1.47901 1.45950 1.58040 1.22179 1.09595 1.21052 0.97904 0.94204 0.83265 0.92762 1.21992 0.95520 1.00103 1.02749 1.21135 0.89547 0.89714 0.97760 1.42532 1.15921 1.03440 1.76805 1.19639 0.99744 0.84253 1.34068 0.90344 1.25521 0.96423 1.02029 1.02417 1.69816 1.06299 1.35509 1.50202 0.85172 0.77649 0.80528 0.76574 1.21928 1.22306 1.19143 0.88564 0.92200 0.89981 0.80646 0.81060 0.84295 0.86544 0.84491 0.75290 0.92918 0.90522 0.90575 0.93926 0.94762 0.79352 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.30 71.24 0.66 -1.12 16 2 C -0.13 -2.94 5.90 -19.77 -0.12 -3.06 16 3 C 0.08 1.97 10.86 84.69 0.92 2.89 16 4 N -0.51 -13.83 10.36 -195.84 -2.03 -15.86 16 5 C 0.08 2.00 11.18 84.67 0.95 2.95 16 6 C -0.17 -4.48 9.80 22.36 0.22 -4.26 16 7 C -0.03 -0.87 4.41 -19.67 -0.09 -0.96 16 8 C -0.10 -2.31 5.19 29.10 0.15 -2.16 16 9 C 0.52 15.68 7.11 87.66 0.62 16.30 16 10 O -0.58 -22.17 15.70 -3.03 -0.05 -22.22 16 11 N -0.71 -20.65 4.52 -442.54 -2.00 -22.65 16 12 C 0.14 4.48 2.73 44.99 0.12 4.60 16 13 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 14 C -0.15 -3.53 9.48 71.98 0.68 -2.85 16 15 C 0.15 5.30 5.82 86.38 0.50 5.80 16 16 N -0.74 -35.74 5.43 -343.44 -1.87 -37.60 16 17 C -0.25 -13.09 9.99 84.04 0.84 -12.25 16 18 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 20 N -0.97 -57.63 13.06 21.65 0.28 -57.34 16 21 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.11 6.35 -2.39 -0.02 1.09 16 27 H 0.08 1.16 8.09 -2.38 -0.02 1.14 16 28 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 29 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 30 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 31 H 0.12 2.54 8.07 -2.39 -0.02 2.52 16 32 H 0.14 2.18 7.11 -2.39 -0.02 2.17 16 33 H 0.41 10.91 8.60 -92.71 -0.80 10.11 16 34 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.37 19.52 7.33 -92.71 -0.68 18.84 16 40 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -71.14 339.52 1.88 -69.27 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.43 Total: 37.25 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 5.93 Total: 2.38 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -5.61 Total: -133.46 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.14 1.88 -69.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274752415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.954 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds