Wall clock time and date at job start Mon Mar 30 2020 01:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38671 * 120.78972 * 2 1 4 4 C 1.38181 * 119.16318 * 179.97438 * 3 2 1 5 5 N 1.31886 * 120.76668 * 0.02562 * 4 3 2 6 6 C 1.31865 * 121.72347 * 359.68705 * 5 4 3 7 7 C 1.38218 * 120.75925 * 0.58061 * 6 5 4 8 8 C 1.50701 * 120.41710 * 179.73203 * 7 6 5 9 9 C 1.50703 * 109.47355 * 264.72046 * 8 7 6 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 H 1.08995 * 109.47013 * 324.72129 * 12 11 9 14 14 C 1.52999 * 109.47257 * 84.72116 * 12 11 9 15 15 C 1.53004 * 109.47065 * 204.72115 * 12 11 9 16 16 N 1.46502 * 109.46925 * 55.00022 * 15 12 11 17 17 C 1.36936 * 119.99899 * 180.02562 * 16 15 12 18 18 H 1.07997 * 119.99841 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99864 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47135 * 89.99872 * 21 19 17 23 23 H 1.48502 * 109.47031 * 210.00069 * 21 19 17 24 24 H 1.48501 * 109.47093 * 329.99888 * 21 19 17 25 25 H 1.09003 * 109.47308 * 270.02332 * 1 2 3 26 26 H 1.09004 * 109.47226 * 30.02453 * 1 2 3 27 27 H 1.08999 * 109.47229 * 150.02900 * 1 2 3 28 28 H 1.07996 * 120.42236 * 359.94924 * 3 2 1 29 29 H 1.08002 * 119.61921 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.61789 * 180.28608 * 6 5 4 31 31 H 1.08998 * 109.47477 * 144.71892 * 8 7 6 32 32 H 1.09002 * 109.47412 * 24.72151 * 8 7 6 33 33 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 34 34 H 1.08995 * 109.47098 * 60.00065 * 14 12 11 35 35 H 1.09003 * 109.47054 * 179.97438 * 14 12 11 36 36 H 1.08996 * 109.47245 * 299.99926 * 14 12 11 37 37 H 1.08997 * 109.47038 * 174.99692 * 15 12 11 38 38 H 1.08999 * 109.47047 * 295.00318 * 15 12 11 39 39 H 0.96997 * 120.00059 * 359.97438 * 16 15 12 40 40 H 0.97004 * 119.99658 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1517 0.0062 7 6 2.2166 -1.1909 0.0003 8 6 1.4908 -2.5116 0.0007 9 6 1.1404 -2.8927 -1.4146 10 8 1.4493 -2.1634 -2.3331 11 7 0.4830 -4.0435 -1.6596 12 6 0.1477 -4.4168 -3.0359 13 1 -0.0917 -3.5202 -3.6075 14 6 1.3419 -5.1266 -3.6771 15 6 -1.0605 -5.3556 -3.0299 16 7 -2.1679 -4.7214 -2.3104 17 6 -3.3616 -5.3785 -2.1746 18 1 -3.4868 -6.3640 -2.5982 19 6 -4.4108 -4.7779 -1.4924 20 7 -4.2580 -3.5770 -0.9757 21 14 -6.0394 -5.6739 -1.3078 22 1 -6.0208 -6.4833 -0.0628 23 1 -7.1440 -4.6838 -1.2380 24 1 -6.2483 -6.5670 -2.4757 25 1 -0.3634 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6967 2.1377 -0.0008 29 1 4.1583 2.0754 0.0001 30 1 4.1585 -2.0750 0.0107 31 1 0.5781 -2.4244 0.5900 32 1 2.1320 -3.2785 0.4353 33 1 0.2356 -4.6265 -0.9249 34 1 1.5813 -6.0233 -3.1055 35 1 1.0923 -5.4048 -4.7010 36 1 2.2026 -4.4579 -3.6814 37 1 -1.3649 -5.5625 -4.0558 38 1 -0.7928 -6.2891 -2.5349 39 1 -2.0554 -3.8365 -1.9296 40 1 -4.9913 -3.1572 -0.4993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275190461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:40 Heat of formation + Delta-G solvation = -3.914195 kcal Electronic energy + Delta-G solvation = -21335.759583 eV Core-core repulsion = 18150.264260 eV Total energy + Delta-G solvation = -3185.495323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53204 -39.22355 -36.23580 -34.30337 -33.65590 -32.52680 -31.32332 -30.02349 -28.35174 -27.21057 -25.69953 -23.12358 -22.63197 -21.95750 -20.66546 -20.01905 -17.33317 -16.79249 -16.74541 -16.42209 -15.91940 -15.06641 -14.82466 -14.59440 -14.18735 -13.73010 -13.53004 -13.41645 -13.16419 -12.78012 -12.71377 -12.57930 -12.35303 -12.26526 -12.18472 -11.82538 -11.60372 -11.30862 -10.93873 -10.87603 -10.48794 -10.09744 -9.79193 -9.70232 -9.43873 -9.34455 -8.97607 -8.89875 -8.70352 -7.01261 -5.83791 -3.13188 1.11980 1.30602 2.91415 3.38391 3.44153 3.45452 3.46266 3.89408 4.41916 4.52830 4.64075 4.73693 4.89836 4.96920 5.08053 5.28128 5.34081 5.44747 5.49307 5.49680 5.54870 5.60559 5.64951 5.68362 5.81581 5.99795 6.05299 6.07534 6.15978 6.17880 6.37425 6.40865 6.45474 6.67165 6.73668 6.93237 7.63365 7.85257 7.98743 8.34482 8.53653 9.46549 10.02092 10.37841 11.38655 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.004275 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.365308 B = 6547.535454 C = 7584.833381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.021 4.021 3 C -0.175 4.175 4 C 0.094 3.906 5 N -0.492 5.492 6 C 0.111 3.889 7 C -0.113 4.113 8 C -0.103 4.103 9 C 0.516 3.484 10 O -0.541 6.541 11 N -0.711 5.711 12 C 0.134 3.866 13 H 0.085 0.915 14 C -0.157 4.157 15 C 0.144 3.856 16 N -0.731 5.731 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.133 0.867 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.404 0.596 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.033 0.967 38 H 0.025 0.975 39 H 0.386 0.614 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.642 4.152 3.447 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.029 4.029 3 C -0.195 4.195 4 C -0.062 4.062 5 N -0.201 5.201 6 C -0.046 4.046 7 C -0.115 4.115 8 C -0.144 4.144 9 C 0.302 3.698 10 O -0.419 6.419 11 N -0.362 5.362 12 C 0.029 3.971 13 H 0.103 0.897 14 C -0.216 4.216 15 C 0.016 3.984 16 N -0.376 5.376 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.239 0.761 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.220 0.780 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.628 4.555 2.745 15.565 hybrid contribution -2.046 -0.458 0.557 2.169 sum 12.582 4.097 3.302 13.638 Atomic orbital electron populations 1.20894 0.89830 1.04284 1.02848 1.20232 0.96957 0.92368 0.93303 1.21998 0.95567 0.98560 1.03379 1.22658 0.91775 0.96138 0.95679 1.67647 1.41097 0.98450 1.12910 1.22541 0.90858 0.96204 0.95004 1.20189 0.94825 0.94404 1.02085 1.20633 1.02520 0.95272 0.95933 1.20333 0.77800 0.81040 0.90614 1.90701 1.53718 1.51251 1.46198 1.45992 1.57875 1.22572 1.09787 1.21224 0.94436 0.99035 0.82406 0.89651 1.22097 0.98344 1.00369 1.00795 1.20985 0.86935 0.93987 0.96488 1.42347 1.09716 1.20024 1.65554 1.19225 0.89573 0.99485 1.29125 0.91146 1.24733 0.98347 0.96731 1.00916 1.69661 1.32184 1.14598 1.41542 0.86193 0.83706 0.78483 0.77800 1.21704 1.21762 1.20756 0.90304 0.90902 0.90336 0.84955 0.83071 0.83179 0.87262 0.87889 0.76111 0.92583 0.91719 0.92479 0.94921 0.95768 0.78035 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.31 36.00 0.34 -1.23 16 2 C -0.02 -0.27 5.92 -104.32 -0.62 -0.89 16 3 C -0.18 -2.08 9.82 -39.44 -0.39 -2.46 16 4 C 0.09 1.13 11.18 -17.55 -0.20 0.93 16 5 N -0.49 -6.80 10.36 -13.25 -0.14 -6.94 16 6 C 0.11 1.45 10.84 -17.54 -0.19 1.26 16 7 C -0.11 -1.50 4.39 -104.48 -0.46 -1.95 16 8 C -0.10 -1.24 5.18 -29.03 -0.15 -1.39 16 9 C 0.52 7.99 7.11 -10.98 -0.08 7.91 16 10 O -0.54 -10.33 15.70 5.55 0.09 -10.24 16 11 N -0.71 -10.78 4.52 -53.81 -0.24 -11.02 16 12 C 0.13 2.19 2.73 -67.93 -0.19 2.01 16 13 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 14 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 15 C 0.14 2.73 5.82 -4.04 -0.02 2.70 16 16 N -0.73 -17.59 5.43 -59.91 -0.33 -17.92 16 17 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 21 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 27 H 0.08 1.18 6.36 -51.93 -0.33 0.85 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.11 1.25 7.09 -51.93 -0.37 0.88 16 32 H 0.10 0.93 8.06 -51.93 -0.42 0.51 16 33 H 0.40 5.68 8.60 -40.82 -0.35 5.33 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.39 9.83 7.33 -40.82 -0.30 9.53 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -32.73 339.52 -7.58 -40.31 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.93 Total: 12.32 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.85 Total: -1.98 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: 0.02 Total: -62.26 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.73 -7.58 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275190461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.393 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds