Wall clock time and date at job start Mon Mar 30 2020 01:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38671 * 120.78972 * 2 1 4 4 C 1.38181 * 119.16318 * 179.97438 * 3 2 1 5 5 N 1.31886 * 120.76668 * 0.02562 * 4 3 2 6 6 C 1.31865 * 121.72347 * 359.68705 * 5 4 3 7 7 C 1.38218 * 120.75925 * 0.58061 * 6 5 4 8 8 C 1.50701 * 120.41710 * 179.73203 * 7 6 5 9 9 C 1.50703 * 109.47355 * 264.72046 * 8 7 6 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 H 1.08995 * 109.47013 * 324.72129 * 12 11 9 14 14 C 1.52999 * 109.47257 * 84.72116 * 12 11 9 15 15 C 1.53004 * 109.47065 * 204.72115 * 12 11 9 16 16 N 1.46502 * 109.46925 * 55.00022 * 15 12 11 17 17 C 1.36936 * 119.99899 * 180.02562 * 16 15 12 18 18 H 1.07997 * 119.99841 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99864 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47135 * 89.99872 * 21 19 17 23 23 H 1.48502 * 109.47031 * 210.00069 * 21 19 17 24 24 H 1.48501 * 109.47093 * 329.99888 * 21 19 17 25 25 H 1.09003 * 109.47308 * 270.02332 * 1 2 3 26 26 H 1.09004 * 109.47226 * 30.02453 * 1 2 3 27 27 H 1.08999 * 109.47229 * 150.02900 * 1 2 3 28 28 H 1.07996 * 120.42236 * 359.94924 * 3 2 1 29 29 H 1.08002 * 119.61921 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.61789 * 180.28608 * 6 5 4 31 31 H 1.08998 * 109.47477 * 144.71892 * 8 7 6 32 32 H 1.09002 * 109.47412 * 24.72151 * 8 7 6 33 33 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 34 34 H 1.08995 * 109.47098 * 60.00065 * 14 12 11 35 35 H 1.09003 * 109.47054 * 179.97438 * 14 12 11 36 36 H 1.08996 * 109.47245 * 299.99926 * 14 12 11 37 37 H 1.08997 * 109.47038 * 174.99692 * 15 12 11 38 38 H 1.08999 * 109.47047 * 295.00318 * 15 12 11 39 39 H 0.96997 * 120.00059 * 359.97438 * 16 15 12 40 40 H 0.97004 * 119.99658 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1517 0.0062 7 6 2.2166 -1.1909 0.0003 8 6 1.4908 -2.5116 0.0007 9 6 1.1404 -2.8927 -1.4146 10 8 1.4493 -2.1634 -2.3331 11 7 0.4830 -4.0435 -1.6596 12 6 0.1477 -4.4168 -3.0359 13 1 -0.0917 -3.5202 -3.6075 14 6 1.3419 -5.1266 -3.6771 15 6 -1.0605 -5.3556 -3.0299 16 7 -2.1679 -4.7214 -2.3104 17 6 -3.3616 -5.3785 -2.1746 18 1 -3.4868 -6.3640 -2.5982 19 6 -4.4108 -4.7779 -1.4924 20 7 -4.2580 -3.5770 -0.9757 21 14 -6.0394 -5.6739 -1.3078 22 1 -6.0208 -6.4833 -0.0628 23 1 -7.1440 -4.6838 -1.2380 24 1 -6.2483 -6.5670 -2.4757 25 1 -0.3634 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6967 2.1377 -0.0008 29 1 4.1583 2.0754 0.0001 30 1 4.1585 -2.0750 0.0107 31 1 0.5781 -2.4244 0.5900 32 1 2.1320 -3.2785 0.4353 33 1 0.2356 -4.6265 -0.9249 34 1 1.5813 -6.0233 -3.1055 35 1 1.0923 -5.4048 -4.7010 36 1 2.2026 -4.4579 -3.6814 37 1 -1.3649 -5.5625 -4.0558 38 1 -0.7928 -6.2891 -2.5349 39 1 -2.0554 -3.8365 -1.9296 40 1 -4.9913 -3.1572 -0.4993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275190461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:40 Heat of formation + Delta-G solvation = -26.121813 kcal Electronic energy + Delta-G solvation = -21336.722577 eV Core-core repulsion = 18150.264260 eV Total energy + Delta-G solvation = -3186.458317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55836 -40.41816 -37.70903 -35.47873 -35.26708 -33.57569 -32.91129 -31.55069 -29.34755 -28.21608 -27.40111 -24.60460 -23.93178 -23.05367 -21.93365 -21.26006 -19.21626 -18.09937 -17.74185 -17.45391 -17.14709 -16.62231 -16.10935 -15.78224 -15.47653 -15.24390 -15.12322 -14.66320 -14.21765 -13.95478 -13.79623 -13.74723 -13.63772 -13.55205 -13.44705 -13.06114 -12.85988 -12.77152 -12.61563 -12.26835 -12.14334 -11.88947 -11.69424 -11.02658 -10.89691 -10.40987 -10.31860 -10.00660 -9.87546 -8.99798 -7.93550 -5.22594 0.17582 0.33157 1.49690 1.50533 1.58717 1.70253 2.29194 2.57075 2.90546 3.41035 3.51355 3.70497 3.78437 3.81590 3.95851 4.00981 4.05377 4.13859 4.31441 4.48105 4.49748 4.53761 4.61168 4.67955 4.70717 4.80879 4.87752 4.91089 4.95556 5.07732 5.14004 5.18168 5.31481 5.44370 5.52112 5.62574 5.81356 6.27614 6.63832 7.04096 7.32370 7.35385 8.08341 8.32854 9.29349 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.004275 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.365308 B = 6547.535454 C = 7584.833381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.040 4.040 3 C -0.178 4.178 4 C 0.088 3.912 5 N -0.514 5.514 6 C 0.100 3.900 7 C -0.126 4.126 8 C -0.095 4.095 9 C 0.516 3.484 10 O -0.581 6.581 11 N -0.707 5.707 12 C 0.141 3.859 13 H 0.055 0.945 14 C -0.146 4.146 15 C 0.146 3.854 16 N -0.743 5.743 17 C -0.246 4.246 18 H 0.077 0.923 19 C -0.069 4.069 20 N -0.965 5.965 21 Si 0.970 3.030 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.272 1.272 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.157 0.843 29 H 0.181 0.819 30 H 0.169 0.831 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.034 0.966 38 H 0.042 0.958 39 H 0.375 0.625 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.266 3.303 3.851 15.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.048 4.048 3 C -0.197 4.197 4 C -0.068 4.068 5 N -0.223 5.223 6 C -0.056 4.056 7 C -0.129 4.129 8 C -0.135 4.135 9 C 0.303 3.697 10 O -0.461 6.461 11 N -0.359 5.359 12 C 0.036 3.964 13 H 0.073 0.927 14 C -0.204 4.204 15 C 0.019 3.981 16 N -0.386 5.386 17 C -0.378 4.378 18 H 0.095 0.905 19 C -0.262 4.262 20 N -0.616 5.616 21 Si 0.800 3.200 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.197 1.197 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.174 0.826 29 H 0.198 0.802 30 H 0.186 0.814 31 H 0.132 0.868 32 H 0.155 0.845 33 H 0.247 0.753 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.207 0.793 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 15.274 3.655 3.140 16.016 hybrid contribution -2.198 -0.180 0.379 2.238 sum 13.075 3.475 3.519 13.979 Atomic orbital electron populations 1.20838 0.89962 1.03120 1.03447 1.20464 0.97131 0.93244 0.93926 1.22293 0.95766 0.99122 1.02529 1.23179 0.92191 0.96748 0.94692 1.67687 1.41788 0.99163 1.13675 1.22871 0.91023 0.96899 0.94824 1.20344 0.95141 0.94821 1.02556 1.20636 1.03337 0.95905 0.93595 1.20885 0.76860 0.80284 0.91632 1.90678 1.55389 1.52313 1.47763 1.45962 1.57580 1.22800 1.09526 1.21038 0.94798 0.97483 0.83082 0.92695 1.21993 0.96417 1.00495 1.01529 1.21120 0.86345 0.94737 0.95904 1.42514 1.10414 1.19708 1.65977 1.19619 0.90526 0.99660 1.27959 0.90482 1.25490 1.01602 0.97607 1.01521 1.69811 1.32808 1.16106 1.42843 0.85193 0.79590 0.77239 0.78011 1.21203 1.22601 1.19700 0.88843 0.90414 0.93053 0.82572 0.80225 0.81424 0.86787 0.84519 0.75317 0.90657 0.90497 0.93114 0.94791 0.94028 0.79270 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 9.31 71.24 0.66 -2.34 16 2 C -0.04 -1.03 5.92 -19.67 -0.12 -1.15 16 3 C -0.18 -3.99 9.82 22.36 0.22 -3.77 16 4 C 0.09 1.98 11.18 84.67 0.95 2.93 16 5 N -0.51 -13.66 10.36 -195.84 -2.03 -15.69 16 6 C 0.10 2.54 10.84 84.68 0.92 3.46 16 7 C -0.13 -3.27 4.39 -19.78 -0.09 -3.36 16 8 C -0.09 -2.20 5.18 29.10 0.15 -2.05 16 9 C 0.52 15.89 7.11 87.66 0.62 16.52 16 10 O -0.58 -22.55 15.70 -3.04 -0.05 -22.60 16 11 N -0.71 -21.08 4.52 -442.53 -2.00 -23.08 16 12 C 0.14 4.56 2.73 44.99 0.12 4.69 16 13 H 0.05 2.12 7.58 -2.39 -0.02 2.11 16 14 C -0.15 -3.70 9.48 71.98 0.68 -3.01 16 15 C 0.15 5.36 5.82 86.38 0.50 5.86 16 16 N -0.74 -35.61 5.43 -343.45 -1.87 -37.48 16 17 C -0.25 -13.09 9.99 84.03 0.84 -12.25 16 18 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 20 N -0.97 -56.80 13.06 21.65 0.28 -56.52 16 21 Si 0.97 44.57 29.55 68.60 2.03 46.59 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.08 1.86 8.10 -2.39 -0.02 1.84 16 27 H 0.05 1.59 6.36 -2.39 -0.02 1.57 16 28 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.11 2.55 7.09 -2.39 -0.02 2.53 16 32 H 0.14 2.18 8.06 -2.39 -0.02 2.16 16 33 H 0.41 11.12 8.60 -92.71 -0.80 10.33 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.38 19.41 7.33 -92.71 -0.68 18.73 16 40 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -70.18 339.52 1.87 -68.30 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.43 Total: 38.32 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 5.93 Total: 2.14 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -5.61 Total: -132.76 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -70.18 1.87 -68.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275190461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.180 kcal (2) G-P(sol) polarization free energy of solvation -70.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds