Wall clock time and date at job start Mon Mar 30 2020 01:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38630 * 120.46786 * 2 1 4 4 C 1.38579 * 118.48532 * 179.97438 * 3 2 1 5 5 C 1.38600 * 119.35494 * 359.97438 * 4 3 2 6 6 N 1.31500 * 120.89878 * 359.97438 * 5 4 3 7 7 C 1.32740 * 121.64263 * 0.02562 * 6 5 4 8 8 C 1.48169 * 119.72107 * 179.97438 * 7 6 5 9 9 O 1.21520 * 119.99853 * 185.79117 * 8 7 6 10 10 N 1.34771 * 120.00131 * 5.79045 * 8 7 6 11 11 C 1.46498 * 120.00357 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46975 * 325.00176 * 11 10 8 13 13 C 1.52996 * 109.47469 * 84.99557 * 11 10 8 14 14 C 1.53001 * 109.47316 * 205.00112 * 11 10 8 15 15 H 1.08997 * 109.46781 * 299.99968 * 14 11 10 16 16 C 1.52993 * 109.47097 * 59.99850 * 14 11 10 17 17 N 1.46497 * 109.46958 * 179.97438 * 14 11 10 18 18 C 1.36946 * 120.00037 * 154.99946 * 17 14 11 19 19 H 1.08004 * 119.99414 * 0.02562 * 18 17 14 20 20 C 1.38807 * 120.00195 * 179.97438 * 18 17 14 21 21 N 1.31620 * 120.00303 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99942 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47272 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46894 * 120.00379 * 22 20 18 25 25 H 1.48500 * 109.47181 * 240.00181 * 22 20 18 26 26 H 1.09000 * 109.47403 * 96.71988 * 1 2 3 27 27 H 1.09007 * 109.47089 * 216.71809 * 1 2 3 28 28 H 1.08995 * 109.47299 * 336.71858 * 1 2 3 29 29 H 1.08004 * 120.75559 * 359.95294 * 3 2 1 30 30 H 1.08002 * 120.32447 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.55328 * 180.02562 * 5 4 3 32 32 H 0.97000 * 119.99774 * 0.02562 * 10 8 7 33 33 H 1.09009 * 109.46971 * 60.00283 * 13 11 10 34 34 H 1.08999 * 109.47689 * 180.02562 * 13 11 10 35 35 H 1.08997 * 109.47334 * 300.00665 * 13 11 10 36 36 H 1.09003 * 109.47163 * 180.02562 * 16 14 11 37 37 H 1.09008 * 109.47366 * 299.99492 * 16 14 11 38 38 H 1.08997 * 109.47861 * 60.00000 * 16 14 11 39 39 H 0.97000 * 120.00258 * 334.99957 * 17 14 11 40 40 H 0.96994 * 120.00602 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5949 1.1469 0.0005 5 6 4.2322 -0.0839 0.0016 6 7 3.5406 -1.2024 0.0026 7 6 2.2132 -1.2004 0.0021 8 6 1.4767 -2.4860 0.0027 9 8 0.2662 -2.4928 -0.1039 10 7 2.1492 -3.6479 0.1215 11 6 1.4211 -4.9191 0.1215 12 1 0.4618 -4.7883 0.6223 13 6 1.1858 -5.3722 -1.3207 14 6 2.2423 -5.9773 0.8611 15 1 3.2016 -6.1080 0.3603 16 6 2.4775 -5.5242 2.3033 17 7 1.5139 -7.2483 0.8616 18 6 2.1971 -8.4290 0.9823 19 1 3.2729 -8.4230 1.0776 20 6 1.5068 -9.6333 0.9833 21 7 0.1957 -9.6405 0.8678 22 14 2.4388 -11.2438 1.1473 23 1 3.8931 -10.9650 1.2599 24 1 1.9764 -11.9618 2.3622 25 1 2.1880 -12.0851 -0.0504 26 1 -0.3634 -0.1202 -1.0206 27 1 -0.3634 -0.8238 0.6145 28 1 -0.3633 0.9439 0.4062 29 1 1.6900 2.1415 -0.0008 30 1 4.1722 2.0598 0.0001 31 1 5.3114 -0.1250 0.0025 32 1 3.1155 -3.6424 0.2070 33 1 2.1452 -5.5030 -1.8216 34 1 0.6437 -6.3178 -1.3208 35 1 0.6008 -4.6184 -1.8476 36 1 3.0629 -6.2778 2.8301 37 1 3.0194 -4.5783 2.3033 38 1 1.5183 -5.3933 2.8041 39 1 0.5476 -7.2536 0.7764 40 1 -0.2867 -10.4820 0.8688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275377626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:23 Heat of formation + Delta-G solvation = 6.823542 kcal Electronic energy + Delta-G solvation = -21324.627787 eV Core-core repulsion = 18139.598088 eV Total energy + Delta-G solvation = -3185.029700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86397 -39.06047 -36.74184 -34.27321 -33.43857 -32.38051 -31.53195 -29.48330 -28.36856 -27.47852 -24.85686 -23.96248 -22.89464 -22.19455 -20.54427 -19.98842 -18.01831 -17.35712 -16.81591 -15.78161 -15.65537 -15.22632 -14.80317 -14.54741 -13.98593 -13.60896 -13.56886 -13.39903 -13.20479 -13.02134 -12.83806 -12.46613 -12.34282 -12.15504 -11.80696 -11.64292 -11.12840 -10.92588 -10.82054 -10.63661 -10.17434 -10.10479 -10.05413 -9.85125 -9.71454 -9.41305 -9.24399 -8.97195 -8.65900 -6.96736 -5.75937 -3.05299 0.48639 0.95748 2.77361 3.23701 3.44161 3.50036 3.52002 3.71775 4.04879 4.49839 4.57548 4.62685 4.67802 4.73933 5.13203 5.29600 5.36748 5.49467 5.52022 5.65312 5.72452 5.75848 5.79302 5.93058 5.94275 6.12853 6.15683 6.27196 6.40551 6.44698 6.48239 6.59186 6.68217 6.85096 6.98118 7.06642 7.47340 7.71284 7.81292 8.36430 8.42113 9.53301 10.08713 10.44072 11.46592 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036403 B = 0.003541 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.992913 B = 7906.217840 C = 8326.308146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C -0.089 4.089 4 C -0.150 4.150 5 C 0.088 3.912 6 N -0.454 5.454 7 C 0.077 3.923 8 C 0.566 3.434 9 O -0.531 6.531 10 N -0.695 5.695 11 C 0.134 3.866 12 H 0.086 0.914 13 C -0.152 4.152 14 C 0.169 3.831 15 H 0.051 0.949 16 C -0.164 4.164 17 N -0.718 5.718 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.162 0.838 32 H 0.407 0.593 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.385 0.615 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.000 23.144 -2.165 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.077 4.077 3 C -0.115 4.115 4 C -0.170 4.170 5 C -0.072 4.072 6 N -0.165 5.165 7 C -0.061 4.061 8 C 0.351 3.649 9 O -0.408 6.408 10 N -0.345 5.345 11 C 0.029 3.971 12 H 0.104 0.896 13 C -0.210 4.210 14 C 0.058 3.942 15 H 0.069 0.931 16 C -0.225 4.225 17 N -0.360 5.360 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.179 0.821 32 H 0.243 0.757 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.219 0.781 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.667 22.108 -2.231 22.932 hybrid contribution 0.395 0.004 0.147 0.421 sum 6.062 22.113 -2.084 23.023 Atomic orbital electron populations 1.21076 0.88911 1.03361 1.04125 1.20984 0.98535 0.92380 0.95808 1.21554 0.94173 0.98089 0.97646 1.22351 0.95282 0.99816 0.99536 1.22777 1.00474 0.87335 0.96574 1.67562 1.07177 1.31941 1.09773 1.21158 0.89796 0.93930 1.01258 1.17826 0.86641 0.83065 0.77386 1.90733 1.13085 1.86651 1.50327 1.45953 1.11500 1.05388 1.71634 1.21411 0.96605 0.81766 0.97281 0.89556 1.22049 1.01697 1.02014 0.95259 1.20383 0.94697 0.86145 0.92945 0.93061 1.22443 1.00950 0.99185 0.99877 1.42300 1.06424 0.99466 1.87826 1.19251 0.91401 0.84035 1.42116 0.91078 1.24733 0.95563 0.97641 1.02920 1.69669 1.05509 1.25485 1.57270 0.86130 0.78768 0.84143 0.77210 1.20575 1.21925 1.21903 0.90316 0.87994 0.92347 0.84267 0.84373 0.82128 0.75714 0.93014 0.90017 0.93445 0.92632 0.94479 0.93453 0.78056 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 8.74 36.01 0.31 -0.97 16 2 C -0.07 -0.84 5.93 -104.09 -0.62 -1.46 16 3 C -0.09 -0.74 9.83 -39.31 -0.39 -1.13 16 4 C -0.15 -1.10 10.11 -39.32 -0.40 -1.50 16 5 C 0.09 0.79 11.18 -17.56 -0.20 0.59 16 6 N -0.45 -5.52 9.56 -9.80 -0.09 -5.61 16 7 C 0.08 1.03 6.75 -83.01 -0.56 0.47 16 8 C 0.57 8.88 7.72 -12.18 -0.09 8.79 16 9 O -0.53 -9.37 12.97 5.35 0.07 -9.30 16 10 N -0.69 -10.71 4.37 -54.65 -0.24 -10.95 16 11 C 0.13 2.38 2.21 -67.93 -0.15 2.23 16 12 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 13 C -0.15 -2.72 9.33 37.16 0.35 -2.37 16 14 C 0.17 3.33 2.52 -67.93 -0.17 3.16 16 15 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 16 C -0.16 -3.03 9.33 37.15 0.35 -2.68 16 17 N -0.72 -17.67 4.43 -53.43 -0.24 -17.90 16 18 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 22 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.10 1.35 5.85 -51.93 -0.30 1.05 16 28 H 0.06 0.48 8.05 -51.93 -0.42 0.06 16 29 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 30 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.41 5.76 7.73 -40.82 -0.32 5.45 16 33 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.08 1.64 7.45 -51.93 -0.39 1.25 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.04 0.58 7.45 -51.92 -0.39 0.20 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.39 10.16 7.58 -40.82 -0.31 9.85 16 40 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -31.38 335.12 -7.42 -38.80 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.86 Total: 11.79 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.81 Total: -1.93 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.16 Total: -61.68 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.38 -7.42 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275377626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.624 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds