Wall clock time and date at job start Mon Mar 30 2020 01:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38630 * 120.46786 * 2 1 4 4 C 1.38579 * 118.48532 * 179.97438 * 3 2 1 5 5 C 1.38600 * 119.35494 * 359.97438 * 4 3 2 6 6 N 1.31500 * 120.89878 * 359.97438 * 5 4 3 7 7 C 1.32740 * 121.64263 * 0.02562 * 6 5 4 8 8 C 1.48169 * 119.72107 * 179.97438 * 7 6 5 9 9 O 1.21520 * 119.99853 * 185.79117 * 8 7 6 10 10 N 1.34771 * 120.00131 * 5.79045 * 8 7 6 11 11 C 1.46498 * 120.00357 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46975 * 325.00176 * 11 10 8 13 13 C 1.52996 * 109.47469 * 84.99557 * 11 10 8 14 14 C 1.53001 * 109.47316 * 205.00112 * 11 10 8 15 15 H 1.08997 * 109.46781 * 299.99968 * 14 11 10 16 16 C 1.52993 * 109.47097 * 59.99850 * 14 11 10 17 17 N 1.46497 * 109.46958 * 179.97438 * 14 11 10 18 18 C 1.36946 * 120.00037 * 154.99946 * 17 14 11 19 19 H 1.08004 * 119.99414 * 0.02562 * 18 17 14 20 20 C 1.38807 * 120.00195 * 179.97438 * 18 17 14 21 21 N 1.31620 * 120.00303 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99942 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47272 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46894 * 120.00379 * 22 20 18 25 25 H 1.48500 * 109.47181 * 240.00181 * 22 20 18 26 26 H 1.09000 * 109.47403 * 96.71988 * 1 2 3 27 27 H 1.09007 * 109.47089 * 216.71809 * 1 2 3 28 28 H 1.08995 * 109.47299 * 336.71858 * 1 2 3 29 29 H 1.08004 * 120.75559 * 359.95294 * 3 2 1 30 30 H 1.08002 * 120.32447 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.55328 * 180.02562 * 5 4 3 32 32 H 0.97000 * 119.99774 * 0.02562 * 10 8 7 33 33 H 1.09009 * 109.46971 * 60.00283 * 13 11 10 34 34 H 1.08999 * 109.47689 * 180.02562 * 13 11 10 35 35 H 1.08997 * 109.47334 * 300.00665 * 13 11 10 36 36 H 1.09003 * 109.47163 * 180.02562 * 16 14 11 37 37 H 1.09008 * 109.47366 * 299.99492 * 16 14 11 38 38 H 1.08997 * 109.47861 * 60.00000 * 16 14 11 39 39 H 0.97000 * 120.00258 * 334.99957 * 17 14 11 40 40 H 0.96994 * 120.00602 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5949 1.1469 0.0005 5 6 4.2322 -0.0839 0.0016 6 7 3.5406 -1.2024 0.0026 7 6 2.2132 -1.2004 0.0021 8 6 1.4767 -2.4860 0.0027 9 8 0.2662 -2.4928 -0.1039 10 7 2.1492 -3.6479 0.1215 11 6 1.4211 -4.9191 0.1215 12 1 0.4618 -4.7883 0.6223 13 6 1.1858 -5.3722 -1.3207 14 6 2.2423 -5.9773 0.8611 15 1 3.2016 -6.1080 0.3603 16 6 2.4775 -5.5242 2.3033 17 7 1.5139 -7.2483 0.8616 18 6 2.1971 -8.4290 0.9823 19 1 3.2729 -8.4230 1.0776 20 6 1.5068 -9.6333 0.9833 21 7 0.1957 -9.6405 0.8678 22 14 2.4388 -11.2438 1.1473 23 1 3.8931 -10.9650 1.2599 24 1 1.9764 -11.9618 2.3622 25 1 2.1880 -12.0851 -0.0504 26 1 -0.3634 -0.1202 -1.0206 27 1 -0.3634 -0.8238 0.6145 28 1 -0.3633 0.9439 0.4062 29 1 1.6900 2.1415 -0.0008 30 1 4.1722 2.0598 0.0001 31 1 5.3114 -0.1250 0.0025 32 1 3.1155 -3.6424 0.2070 33 1 2.1452 -5.5030 -1.8216 34 1 0.6437 -6.3178 -1.3208 35 1 0.6008 -4.6184 -1.8476 36 1 3.0629 -6.2778 2.8301 37 1 3.0194 -4.5783 2.3033 38 1 1.5183 -5.3933 2.8041 39 1 0.5476 -7.2536 0.7764 40 1 -0.2867 -10.4820 0.8688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275377626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:23 Heat of formation + Delta-G solvation = -14.199750 kcal Electronic energy + Delta-G solvation = -21325.539426 eV Core-core repulsion = 18139.598088 eV Total energy + Delta-G solvation = -3185.941338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78511 -40.18572 -38.27438 -35.75581 -34.50834 -33.58457 -32.90331 -30.95771 -30.16287 -28.34031 -25.93745 -25.78075 -24.21879 -23.09292 -21.75328 -21.52114 -19.43551 -18.97386 -17.71928 -16.99980 -16.67036 -16.41661 -16.19669 -15.92277 -15.30230 -15.19655 -14.95471 -14.61570 -14.43762 -14.10119 -14.01133 -13.67480 -13.46786 -13.34118 -13.14469 -12.94714 -12.90168 -12.75401 -12.58809 -12.26231 -12.09261 -11.73271 -11.48626 -11.06390 -10.99854 -10.74898 -10.40479 -10.21816 -9.85053 -9.01897 -7.91823 -5.21117 -0.31791 0.27190 1.49421 1.49801 1.59775 1.75068 2.04321 2.59408 2.87062 3.18324 3.42235 3.72801 3.80735 3.87767 3.97271 4.03922 4.08053 4.18616 4.32817 4.52568 4.56523 4.59425 4.74783 4.79694 4.80833 4.87254 4.92149 5.01657 5.12740 5.13823 5.20627 5.28450 5.36208 5.47556 5.51746 5.59246 5.72119 6.28945 6.44752 6.85005 7.18025 7.35523 8.07599 8.32276 9.31851 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036403 B = 0.003541 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.992913 B = 7906.217840 C = 8326.308146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.086 4.086 4 C -0.130 4.130 5 C 0.081 3.919 6 N -0.476 5.476 7 C 0.044 3.956 8 C 0.562 3.438 9 O -0.559 6.559 10 N -0.690 5.690 11 C 0.149 3.851 12 H 0.065 0.935 13 C -0.142 4.142 14 C 0.169 3.831 15 H 0.058 0.942 16 C -0.153 4.153 17 N -0.729 5.729 18 C -0.233 4.233 19 H 0.079 0.921 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.296 1.296 25 H -0.295 1.295 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.173 0.827 30 H 0.181 0.819 31 H 0.192 0.808 32 H 0.415 0.585 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.373 0.627 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 25.927 -2.133 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.080 4.080 6 N -0.187 5.187 7 C -0.092 4.092 8 C 0.349 3.651 9 O -0.439 6.439 10 N -0.340 5.340 11 C 0.044 3.956 12 H 0.083 0.917 13 C -0.200 4.200 14 C 0.060 3.940 15 H 0.076 0.924 16 C -0.213 4.213 17 N -0.370 5.370 18 C -0.365 4.365 19 H 0.097 0.903 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.801 3.199 23 H -0.188 1.188 24 H -0.224 1.224 25 H -0.223 1.223 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.190 0.810 30 H 0.199 0.801 31 H 0.208 0.792 32 H 0.252 0.748 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.205 0.795 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.268 24.931 -2.193 26.358 hybrid contribution -0.313 -0.650 0.128 0.733 sum 7.955 24.281 -2.065 25.634 Atomic orbital electron populations 1.20974 0.89265 1.03610 1.03193 1.21142 0.98590 0.93006 0.96279 1.21962 0.94868 0.98054 0.96283 1.22838 0.95056 1.00787 0.96233 1.23431 1.01863 0.87189 0.95474 1.67485 1.06613 1.33915 1.10718 1.20798 0.90608 0.92976 1.04816 1.18335 0.86534 0.83934 0.76331 1.90721 1.14441 1.87246 1.51447 1.45760 1.11646 1.04527 1.72105 1.20984 0.95572 0.82526 0.96551 0.91670 1.21919 1.01789 1.00704 0.95592 1.20518 0.94559 0.84834 0.94085 0.92409 1.22280 1.00516 1.00245 0.98254 1.42455 1.06009 1.00656 1.87835 1.19631 0.91866 0.84955 1.40066 0.90274 1.25528 0.96367 1.00950 1.03896 1.69831 1.07081 1.25791 1.59361 0.85097 0.78349 0.79991 0.76464 1.18840 1.22387 1.22281 0.91113 0.91018 0.89497 0.81002 0.80135 0.79150 0.74797 0.92082 0.92543 0.93191 0.93603 0.91569 0.94627 0.79519 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 8.74 71.24 0.62 -1.80 16 2 C -0.09 -1.85 5.93 -19.52 -0.12 -1.96 16 3 C -0.09 -1.11 9.83 22.44 0.22 -0.89 16 4 C -0.13 -1.28 10.11 22.44 0.23 -1.06 16 5 C 0.08 1.16 11.18 84.83 0.95 2.11 16 6 N -0.48 -10.74 9.56 -184.91 -1.77 -12.51 16 7 C 0.04 1.16 6.75 41.89 0.28 1.44 16 8 C 0.56 17.99 7.72 86.88 0.67 18.66 16 9 O -0.56 -20.67 12.97 -3.78 -0.05 -20.72 16 10 N -0.69 -21.39 4.37 -445.10 -1.95 -23.33 16 11 C 0.15 5.44 2.21 44.99 0.10 5.54 16 12 H 0.07 2.68 7.58 -2.38 -0.02 2.66 16 13 C -0.14 -5.23 9.33 71.98 0.67 -4.55 16 14 C 0.17 6.71 2.52 44.99 0.11 6.82 16 15 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 16 C -0.15 -5.59 9.33 71.98 0.67 -4.92 16 17 N -0.73 -36.65 4.43 -322.95 -1.43 -38.08 16 18 C -0.23 -12.80 9.93 84.03 0.83 -11.97 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 21 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 22 Si 0.97 46.24 29.55 68.60 2.03 48.26 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.98 5.85 -2.38 -0.01 1.97 16 28 H 0.09 1.27 8.05 -2.39 -0.02 1.25 16 29 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 31 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.41 11.49 7.73 -92.71 -0.72 10.77 16 33 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.06 2.36 7.45 -2.39 -0.02 2.34 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 2.01 7.45 -2.38 -0.02 2.00 16 38 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.37 20.48 7.58 -92.71 -0.70 19.77 16 40 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -70.22 335.12 2.46 -67.76 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: -0.37 Total: 34.54 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 5.71 Total: 3.57 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -4.86 Total: -133.40 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -70.22 2.46 -67.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275377626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.557 kcal (2) G-P(sol) polarization free energy of solvation -70.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds