Wall clock time and date at job start Mon Mar 30 2020 01:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38634 * 120.47124 * 2 1 4 4 C 1.38578 * 118.48952 * 180.26457 * 3 2 1 5 5 C 1.38598 * 119.35072 * 359.74705 * 4 3 2 6 6 N 1.31491 * 120.90208 * 359.97438 * 5 4 3 7 7 C 1.32749 * 121.64362 * 0.02562 * 6 5 4 8 8 C 1.48166 * 119.72647 * 179.97438 * 7 6 5 9 9 O 1.21511 * 120.00327 * 174.48866 * 8 7 6 10 10 N 1.34780 * 119.99849 * 354.48750 * 8 7 6 11 11 C 1.46497 * 120.00070 * 179.72198 * 10 8 7 12 12 H 1.08998 * 109.47255 * 325.28138 * 11 10 8 13 13 C 1.53008 * 109.47003 * 85.27997 * 11 10 8 14 14 C 1.53002 * 109.47371 * 205.27849 * 11 10 8 15 15 H 1.09003 * 109.47312 * 64.99827 * 14 11 10 16 16 C 1.53001 * 109.46915 * 305.00144 * 14 11 10 17 17 N 1.46501 * 109.47138 * 185.00412 * 14 11 10 18 18 C 1.36938 * 119.99829 * 204.99714 * 17 14 11 19 19 H 1.08006 * 120.00101 * 0.02562 * 18 17 14 20 20 C 1.38813 * 120.00178 * 179.97438 * 18 17 14 21 21 N 1.31626 * 119.99573 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00170 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47220 * 59.99782 * 22 20 18 24 24 H 1.48498 * 109.47093 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47025 * 300.00085 * 22 20 18 26 26 H 1.08998 * 109.47269 * 263.53865 * 1 2 3 27 27 H 1.09007 * 109.46683 * 23.53455 * 1 2 3 28 28 H 1.08994 * 109.47003 * 143.53203 * 1 2 3 29 29 H 1.08008 * 120.75514 * 0.02562 * 3 2 1 30 30 H 1.08007 * 120.32563 * 179.72635 * 4 3 2 31 31 H 1.08006 * 119.55357 * 180.02562 * 5 4 3 32 32 H 0.96999 * 119.99754 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.46806 * 299.99844 * 13 11 10 34 34 H 1.08998 * 109.47000 * 59.99985 * 13 11 10 35 35 H 1.08994 * 109.46962 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.47388 * 299.99931 * 16 14 11 37 37 H 1.09004 * 109.47334 * 60.00292 * 16 14 11 38 38 H 1.09000 * 109.47205 * 180.02562 * 16 14 11 39 39 H 0.96990 * 120.00051 * 24.99685 * 17 14 11 40 40 H 0.96998 * 119.99477 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1469 -0.0056 5 6 4.2322 -0.0839 -0.0057 6 7 3.5407 -1.2023 0.0000 7 6 2.2132 -1.2003 0.0055 8 6 1.4766 -2.4859 0.0112 9 8 0.2662 -2.4922 0.1173 10 7 2.1492 -3.6484 -0.1013 11 6 1.4215 -4.9198 -0.0896 12 1 0.5657 -4.8425 0.5810 13 6 0.9340 -5.2415 -1.5038 14 6 2.3504 -6.0347 0.3955 15 1 2.6270 -5.8511 1.4338 16 6 3.6111 -6.0613 -0.4710 17 7 1.6609 -7.3233 0.2942 18 6 2.0346 -8.3650 1.1008 19 1 2.8374 -8.2364 1.8118 20 6 1.3811 -9.5859 1.0052 21 7 0.4018 -9.7421 0.1397 22 14 1.8904 -11.0067 2.1059 23 1 1.7173 -10.6175 3.5285 24 1 1.0442 -12.1904 1.8095 25 1 3.3150 -11.3417 1.8543 26 1 -0.3634 -0.1156 1.0211 27 1 -0.3633 0.9423 -0.4104 28 1 -0.3633 -0.8264 -0.6108 29 1 1.6901 2.1416 0.0004 30 1 4.1722 2.0598 -0.0102 31 1 5.3114 -0.1251 -0.0097 32 1 3.1155 -3.6434 -0.1857 33 1 0.2722 -4.4473 -1.8493 34 1 1.7898 -5.3189 -2.1743 35 1 0.3922 -6.1872 -1.4949 36 1 3.3345 -6.2448 -1.5093 37 1 4.1241 -5.1025 -0.3957 38 1 4.2726 -6.8558 -0.1258 39 1 0.9398 -7.4387 -0.3440 40 1 -0.0546 -10.5954 0.0727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275377627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:26 Heat of formation + Delta-G solvation = -10.427809 kcal Electronic energy + Delta-G solvation = -21337.652792 eV Core-core repulsion = 18151.875018 eV Total energy + Delta-G solvation = -3185.777774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.80414 -40.23797 -38.42355 -35.75420 -34.53289 -33.60167 -32.88345 -30.93632 -29.82798 -28.36302 -26.21396 -25.88761 -24.62320 -23.13172 -21.92037 -20.67447 -19.56993 -19.01428 -17.71749 -16.78560 -16.67671 -16.50674 -16.39590 -15.98179 -15.68016 -15.28590 -14.86986 -14.67496 -14.46013 -14.00878 -13.93913 -13.69382 -13.55442 -13.19641 -13.12051 -12.99234 -12.88723 -12.76626 -12.64430 -12.17921 -12.03239 -11.66933 -11.62551 -11.05640 -10.94813 -10.75496 -10.39802 -10.23265 -9.86628 -9.04131 -7.93507 -5.22764 -0.32661 0.26746 1.48130 1.51262 1.57173 1.73670 2.04593 2.58285 2.86212 3.17663 3.39772 3.74877 3.85455 3.88719 3.95911 4.00298 4.05624 4.07558 4.30092 4.52212 4.57819 4.58730 4.68153 4.79249 4.79527 4.85040 4.94296 4.98944 5.12248 5.17071 5.19007 5.23076 5.35444 5.50051 5.56091 5.59180 5.71807 6.28283 6.43456 6.84339 7.16719 7.34953 8.07980 8.32793 9.29868 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033841 B = 0.003555 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.191784 B = 7873.523645 C = 8266.387987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.086 4.086 4 C -0.129 4.129 5 C 0.081 3.919 6 N -0.477 5.477 7 C 0.043 3.957 8 C 0.560 3.440 9 O -0.559 6.559 10 N -0.692 5.692 11 C 0.148 3.852 12 H 0.062 0.938 13 C -0.148 4.148 14 C 0.167 3.833 15 H 0.044 0.956 16 C -0.157 4.157 17 N -0.732 5.732 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.974 3.026 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.276 1.276 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.173 0.827 30 H 0.182 0.818 31 H 0.192 0.808 32 H 0.415 0.585 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.377 0.623 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 25.986 -2.200 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.111 4.111 4 C -0.149 4.149 5 C -0.079 4.079 6 N -0.188 5.188 7 C -0.093 4.093 8 C 0.347 3.653 9 O -0.439 6.439 10 N -0.345 5.345 11 C 0.042 3.958 12 H 0.080 0.920 13 C -0.206 4.206 14 C 0.058 3.942 15 H 0.062 0.938 16 C -0.217 4.217 17 N -0.375 5.375 18 C -0.374 4.374 19 H 0.094 0.906 20 C -0.266 4.266 21 N -0.620 5.620 22 Si 0.803 3.197 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.202 1.202 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.191 0.809 30 H 0.199 0.801 31 H 0.209 0.791 32 H 0.254 0.746 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.211 0.789 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.815 25.007 -1.990 26.276 hybrid contribution -0.323 -0.609 0.295 0.750 sum 7.492 24.398 -1.695 25.579 Atomic orbital electron populations 1.20975 0.89250 1.03669 1.03154 1.21141 0.98598 0.92978 0.96235 1.21969 0.94870 0.98046 0.96254 1.22845 0.95057 1.00784 0.96170 1.23439 1.01879 0.87181 0.95448 1.67479 1.06625 1.33981 1.10758 1.20795 0.90625 0.92965 1.04916 1.18391 0.86597 0.84068 0.76293 1.90717 1.14449 1.87257 1.51433 1.45945 1.11806 1.04479 1.72228 1.20976 0.94688 0.82502 0.97595 0.91982 1.22021 1.01474 1.01091 0.96054 1.20490 0.91722 0.84671 0.97357 0.93759 1.22343 0.98059 1.00903 1.00361 1.42614 1.41620 1.07872 1.45383 1.19588 1.13531 0.90897 1.13376 0.90566 1.25550 0.99063 1.00605 1.01423 1.69815 1.26873 1.25044 1.40240 0.85208 0.77387 0.78641 0.78493 1.20589 1.22269 1.20243 0.91236 0.89396 0.90951 0.80940 0.80071 0.79103 0.74615 0.92780 0.91177 0.92506 0.92879 0.91188 0.93604 0.78865 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 8.74 71.24 0.62 -1.82 16 2 C -0.09 -1.85 5.93 -19.52 -0.12 -1.96 16 3 C -0.09 -1.11 9.83 22.45 0.22 -0.89 16 4 C -0.13 -1.28 10.11 22.44 0.23 -1.05 16 5 C 0.08 1.17 11.18 84.83 0.95 2.12 16 6 N -0.48 -10.92 9.56 -184.92 -1.77 -12.69 16 7 C 0.04 1.15 6.75 41.89 0.28 1.43 16 8 C 0.56 18.27 7.72 86.88 0.67 18.94 16 9 O -0.56 -21.00 12.97 -3.75 -0.05 -21.04 16 10 N -0.69 -21.94 4.98 -445.09 -2.21 -24.16 16 11 C 0.15 5.50 2.62 45.00 0.12 5.62 16 12 H 0.06 2.65 7.57 -2.39 -0.02 2.63 16 13 C -0.15 -5.32 9.00 71.98 0.65 -4.67 16 14 C 0.17 6.76 2.93 44.99 0.13 6.89 16 15 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 16 C -0.16 -5.44 9.01 71.98 0.65 -4.79 16 17 N -0.73 -37.39 5.03 -322.92 -1.63 -39.02 16 18 C -0.24 -13.57 9.93 84.03 0.83 -12.74 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 20 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 21 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 22 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 1.28 8.06 -2.38 -0.02 1.26 16 28 H 0.07 1.99 5.85 -2.39 -0.01 1.98 16 29 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16 31 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.41 11.73 5.92 -92.71 -0.55 11.19 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.30 6.56 -2.39 -0.02 2.28 16 35 H 0.06 2.28 6.29 -2.39 -0.02 2.27 16 36 H 0.05 1.84 6.57 -2.39 -0.02 1.83 16 37 H 0.07 1.93 6.29 -2.38 -0.02 1.92 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.38 20.51 5.77 -92.72 -0.54 19.98 16 40 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -71.48 327.42 2.34 -69.14 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.02 Total: 35.52 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 5.70 Total: 3.25 kcal Atomic # 7 Polarization: -130.19 SS G_CDS: -5.32 Total: -135.52 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.48 2.34 -69.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275377627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.715 kcal (2) G-P(sol) polarization free energy of solvation -71.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds