Wall clock time and date at job start Mon Mar 30 2020 01:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38352 * 120.35019 * 2 1 4 4 N 1.31929 * 121.08544 * 180.27448 * 3 2 1 5 5 C 1.31695 * 121.87819 * 0.02562 * 4 3 2 6 6 C 1.39520 * 120.56339 * 359.97438 * 5 4 3 7 7 C 1.47844 * 120.55875 * 179.97438 * 6 5 4 8 8 O 1.21549 * 120.00145 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99605 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99876 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46985 * 324.99915 * 10 9 7 12 12 C 1.52997 * 109.47093 * 85.00103 * 10 9 7 13 13 C 1.52996 * 109.47320 * 205.00178 * 10 9 7 14 14 N 1.46507 * 109.47150 * 54.99768 * 13 10 9 15 15 C 1.46501 * 120.00225 * 270.00220 * 14 13 10 16 16 C 1.36935 * 119.99740 * 90.00151 * 14 13 10 17 17 H 1.07997 * 120.00462 * 20.38064 * 16 14 13 18 18 C 1.38814 * 119.99583 * 200.38416 * 16 14 13 19 19 N 1.31614 * 120.00395 * 15.00691 * 18 16 14 20 20 Si 1.86808 * 119.99675 * 195.00698 * 18 16 14 21 21 H 1.48502 * 109.47007 * 85.00037 * 20 18 16 22 22 H 1.48500 * 109.46934 * 205.00273 * 20 18 16 23 23 H 1.48496 * 109.47091 * 325.00042 * 20 18 16 24 24 C 1.38360 * 120.35152 * 180.28222 * 2 1 3 25 25 H 1.08994 * 109.46989 * 269.71796 * 1 2 3 26 26 H 1.08994 * 109.46991 * 29.72166 * 1 2 3 27 27 H 1.09005 * 109.46738 * 149.72075 * 1 2 3 28 28 H 1.08003 * 119.46045 * 0.25779 * 3 2 1 29 29 H 1.07998 * 119.71613 * 179.97438 * 5 4 3 30 30 H 0.96999 * 120.00012 * 0.02562 * 9 7 6 31 31 H 1.09002 * 109.46841 * 180.02562 * 12 10 9 32 32 H 1.09000 * 109.47123 * 299.99651 * 12 10 9 33 33 H 1.08997 * 109.47057 * 60.00041 * 12 10 9 34 34 H 1.08993 * 109.47591 * 174.99947 * 13 10 9 35 35 H 1.08999 * 109.46947 * 295.00407 * 13 10 9 36 36 H 1.09005 * 109.47178 * 95.12555 * 15 14 13 37 37 H 1.08993 * 109.47499 * 215.13010 * 15 14 13 38 38 H 1.09005 * 109.46665 * 335.13330 * 15 14 13 39 39 H 0.97000 * 119.99950 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.85563 * 359.69874 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2108 -0.0054 5 6 4.2350 0.1016 -0.0115 6 6 3.6054 -1.1435 -0.0120 7 6 4.4023 -2.3888 -0.0194 8 8 3.8433 -3.4681 -0.0202 9 7 5.7487 -2.3271 -0.0253 10 6 6.5384 -3.5610 -0.0333 11 1 6.0279 -4.3229 0.5559 12 6 6.7009 -4.0533 -1.4727 13 6 7.9172 -3.2880 0.5711 14 7 7.7587 -2.7045 1.9055 15 6 7.6724 -1.2506 2.0637 16 6 7.6912 -3.5181 3.0049 17 1 8.0729 -4.5270 2.9544 18 6 7.1319 -3.0458 4.1844 19 7 6.4084 -1.9465 4.1758 20 14 7.4064 -3.9708 5.7840 21 1 8.6930 -3.5421 6.3892 22 1 6.2948 -3.6758 6.7234 23 1 7.4497 -5.4298 5.5110 24 6 2.2061 -1.1940 -0.0059 25 1 -0.3633 -0.0051 1.0276 26 1 -0.3633 0.8924 -0.5095 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6629 2.1274 0.0042 29 1 5.3136 0.1561 -0.0163 30 1 6.1948 -1.4658 -0.0243 31 1 7.2881 -4.9716 -1.4786 32 1 5.7186 -4.2479 -1.9033 33 1 7.2114 -3.2914 -2.0618 34 1 8.4723 -4.2229 0.6470 35 1 8.4624 -2.5926 -0.0671 36 1 6.6251 -0.9500 2.0946 37 1 8.1624 -0.9563 2.9918 38 1 8.1654 -0.7637 1.2223 39 1 6.0179 -1.6164 5.0001 40 1 1.6859 -2.1404 -0.0057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275529214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:46 Heat of formation + Delta-G solvation = 16.797867 kcal Electronic energy + Delta-G solvation = -21914.452374 eV Core-core repulsion = 18729.855193 eV Total energy + Delta-G solvation = -3184.597180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43736 -38.80085 -36.35945 -34.13861 -33.61339 -32.29669 -31.04235 -30.00433 -27.28988 -26.20039 -25.63722 -24.46752 -22.65580 -21.74494 -20.37878 -19.85943 -17.50500 -16.92819 -16.62444 -16.24517 -15.24941 -14.90332 -14.69255 -14.24201 -13.94381 -13.64163 -13.37311 -13.17816 -13.00830 -12.87565 -12.72529 -12.65187 -12.17895 -11.97711 -11.87396 -11.46243 -11.12067 -10.85758 -10.78748 -10.55461 -10.22679 -9.98696 -9.87908 -9.80970 -9.66809 -9.20516 -8.92674 -8.60928 -8.38970 -6.79440 -5.72919 -3.16225 0.80807 1.26819 3.22333 3.39779 3.46028 3.47096 3.63087 4.05457 4.38585 4.51226 4.71725 4.87024 4.98422 4.99626 5.22531 5.34253 5.46060 5.46245 5.51565 5.65045 5.68175 5.82789 5.85386 5.97470 6.08143 6.13856 6.20238 6.22951 6.45578 6.51711 6.60847 6.63617 6.85443 7.11559 7.30531 7.63392 7.80771 7.92041 8.03686 8.37018 8.70922 9.21979 9.85338 10.32027 11.32387 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.005652 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.858784 B = 4952.836821 C = 5695.346293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.150 4.150 3 C 0.112 3.888 4 N -0.484 5.484 5 C 0.133 3.867 6 C -0.167 4.167 7 C 0.565 3.435 8 O -0.547 6.547 9 N -0.690 5.690 10 C 0.116 3.884 11 H 0.087 0.913 12 C -0.159 4.159 13 C 0.142 3.858 14 N -0.597 5.597 15 C 0.160 3.840 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.280 1.280 24 C -0.022 4.022 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.394 0.606 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.044 0.956 38 H -0.004 1.004 39 H 0.251 0.749 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 4.900 -11.239 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.045 4.045 4 N -0.191 5.191 5 C -0.025 4.025 6 C -0.172 4.172 7 C 0.350 3.650 8 O -0.426 6.426 9 N -0.339 5.339 10 C 0.009 3.991 11 H 0.105 0.895 12 C -0.218 4.218 13 C 0.014 3.986 14 N -0.320 5.320 15 C 0.015 3.985 16 C -0.386 4.386 17 H 0.087 0.913 18 C -0.194 4.194 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.206 1.206 24 C -0.049 4.049 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.174 0.826 29 H 0.175 0.825 30 H 0.230 0.770 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.014 0.986 39 H 0.061 0.939 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.496 5.019 -11.070 13.781 hybrid contribution -0.203 -0.832 1.131 1.419 sum -6.698 4.186 -9.939 12.695 Atomic orbital electron populations 1.20702 0.89918 1.03046 1.02780 1.20883 0.97774 0.93865 1.02678 1.22814 0.90049 0.97441 0.94194 1.67669 1.07931 1.31074 1.12459 1.22943 1.00251 0.86842 0.92496 1.21131 0.95148 0.95296 1.05634 1.17879 0.82586 0.87954 0.76538 1.90716 1.71259 1.29652 1.50929 1.45714 1.05161 1.10182 1.72849 1.21940 0.95528 0.86595 0.95083 0.89461 1.22153 1.01492 1.00844 0.97326 1.21203 0.92335 0.98004 0.87064 1.43928 1.85051 1.02289 1.00687 1.20870 0.98854 0.82317 0.96463 1.19177 1.33469 0.96826 0.89157 0.91272 1.24941 0.97656 0.98021 0.98813 1.70061 1.34744 1.23844 1.26147 0.86293 0.77197 0.79371 0.83793 1.21510 1.21873 1.20586 1.21599 0.92636 0.98805 0.91849 0.90772 0.91169 0.91216 0.82649 0.82534 0.77047 0.91946 0.92953 0.93106 0.92106 0.93899 0.95102 0.93714 0.98560 0.93858 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.03 36.00 0.36 -0.56 16 2 C -0.15 -1.85 5.89 -104.54 -0.62 -2.47 16 3 C 0.11 1.42 10.85 -17.47 -0.19 1.23 16 4 N -0.48 -7.32 10.35 -12.91 -0.13 -7.45 16 5 C 0.13 2.09 10.71 -17.13 -0.18 1.90 16 6 C -0.17 -2.83 5.89 -104.82 -0.62 -3.45 16 7 C 0.56 11.06 7.75 -12.33 -0.10 10.96 16 8 O -0.55 -12.27 16.08 5.32 0.09 -12.19 16 9 N -0.69 -12.64 4.38 -54.75 -0.24 -12.88 16 10 C 0.12 2.15 2.88 -67.93 -0.20 1.96 16 11 H 0.09 1.96 7.58 -51.93 -0.39 1.57 16 12 C -0.16 -2.37 9.48 37.16 0.35 -2.01 16 13 C 0.14 2.71 5.33 -4.04 -0.02 2.69 16 14 N -0.60 -14.24 2.78 -181.12 -0.50 -14.75 16 15 C 0.16 3.68 7.60 59.85 0.45 4.14 16 16 C -0.26 -6.94 9.68 -15.06 -0.15 -7.09 16 17 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 18 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 19 N -0.90 -26.13 10.67 55.49 0.59 -25.53 16 20 Si 0.90 22.13 29.58 -169.99 -5.03 17.10 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.02 -0.34 9.39 -38.87 -0.37 -0.70 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.16 1.44 8.06 -52.48 -0.42 1.01 16 29 H 0.16 2.24 6.42 -52.49 -0.34 1.91 16 30 H 0.39 6.61 5.25 -40.82 -0.21 6.39 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 35 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 36 H 0.03 0.76 6.97 -51.93 -0.36 0.40 16 37 H 0.04 1.14 7.22 -51.93 -0.37 0.77 16 38 H 0.00 -0.08 7.83 -51.93 -0.41 -0.49 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.14 2.11 7.74 -52.49 -0.41 1.71 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -32.56 333.58 -7.37 -39.93 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.82 Total: 4.12 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.35 Total: 6.62 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.29 Total: -60.61 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.56 -7.37 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275529214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.726 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds