Wall clock time and date at job start Mon Mar 30 2020 01:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38360 * 120.34530 * 2 1 4 4 N 1.31933 * 121.07473 * 180.02562 * 3 2 1 5 5 C 1.31687 * 121.88147 * 359.95653 * 4 3 2 6 6 C 1.39527 * 120.56663 * 0.03981 * 5 4 3 7 7 C 1.47843 * 120.55635 * 180.25241 * 6 5 4 8 8 O 1.21552 * 120.00201 * 322.02521 * 7 6 5 9 9 N 1.34773 * 119.99807 * 142.02204 * 7 6 5 10 10 C 1.46501 * 119.99887 * 4.86751 * 9 7 6 11 11 C 1.46503 * 120.00176 * 184.86523 * 9 7 6 12 12 C 1.52996 * 109.46959 * 89.99844 * 11 9 7 13 13 H 1.09004 * 109.46890 * 65.00666 * 12 11 9 14 14 C 1.52996 * 109.47206 * 185.00027 * 12 11 9 15 15 N 1.46497 * 109.47667 * 305.00345 * 12 11 9 16 16 C 1.36931 * 120.00297 * 154.99600 * 15 12 11 17 17 H 1.08001 * 119.99993 * 0.02562 * 16 15 12 18 18 C 1.38816 * 119.99965 * 180.02562 * 16 15 12 19 19 N 1.31618 * 120.00104 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00011 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47018 * 90.00035 * 20 18 16 22 22 H 1.48506 * 109.47182 * 210.00175 * 20 18 16 23 23 H 1.48502 * 109.47072 * 329.99825 * 20 18 16 24 24 C 1.38349 * 120.35186 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47237 * 269.98096 * 1 2 3 26 26 H 1.09008 * 109.47025 * 29.98193 * 1 2 3 27 27 H 1.08999 * 109.47076 * 149.97510 * 1 2 3 28 28 H 1.07995 * 119.46012 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.71502 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47285 * 84.79917 * 10 9 7 31 31 H 1.09003 * 109.46888 * 204.79547 * 10 9 7 32 32 H 1.08996 * 109.47191 * 324.79575 * 10 9 7 33 33 H 1.08992 * 109.47098 * 210.00099 * 11 9 7 34 34 H 1.08996 * 109.46700 * 330.00194 * 11 9 7 35 35 H 1.08999 * 109.46987 * 60.00158 * 14 12 11 36 36 H 1.08996 * 109.47695 * 180.02562 * 14 12 11 37 37 H 1.09007 * 109.47366 * 300.00507 * 14 12 11 38 38 H 0.97004 * 119.99640 * 334.99968 * 15 12 11 39 39 H 0.96995 * 120.00443 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.85023 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1016 -0.0002 6 6 3.6054 -1.1436 -0.0001 7 6 4.4023 -2.3888 0.0059 8 8 5.4315 -2.4548 -0.6375 9 7 3.9877 -3.4508 0.7247 10 6 2.6955 -3.4094 1.4137 11 6 4.8292 -4.6465 0.8170 12 6 5.7644 -4.5201 2.0212 13 1 5.1760 -4.5101 2.9387 14 6 6.7274 -5.7087 2.0460 15 7 6.5287 -3.2746 1.9175 16 6 7.0256 -2.6801 3.0466 17 1 6.8544 -3.1297 4.0135 18 6 7.7493 -1.4996 2.9483 19 7 8.2273 -0.9285 4.0335 20 14 8.0446 -0.7216 1.2760 21 1 6.9398 0.2209 0.9665 22 1 9.3338 0.0154 1.2936 23 1 8.0954 -1.7828 0.2384 24 6 2.2061 -1.1939 -0.0005 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6629 2.1275 0.0004 29 1 5.3135 0.1561 -0.0002 30 1 1.9049 -3.6979 0.7209 31 1 2.7106 -4.1011 2.2560 32 1 2.5095 -2.3987 1.7768 33 1 4.1978 -5.5266 0.9381 34 1 5.4203 -4.7458 -0.0933 35 1 7.3158 -5.7188 1.1285 36 1 7.3934 -5.6190 2.9041 37 1 6.1588 -6.6355 2.1231 38 1 6.6827 -2.8709 1.0490 39 1 8.7333 -0.1038 3.9649 40 1 1.6858 -2.1403 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277784251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:51 Heat of formation + Delta-G solvation = 24.611747 kcal Electronic energy + Delta-G solvation = -22399.284956 eV Core-core repulsion = 19215.026611 eV Total energy + Delta-G solvation = -3184.258345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.72558 -39.10305 -36.23231 -34.83360 -33.65591 -32.40171 -31.59070 -29.29877 -27.57751 -27.11817 -26.15938 -23.84433 -23.31218 -22.44918 -20.10909 -19.31988 -17.68827 -17.09589 -17.03550 -16.58500 -15.74705 -15.19002 -14.79966 -14.32056 -14.02840 -13.80960 -13.60145 -13.31828 -13.07228 -12.92162 -12.74583 -12.66751 -12.37635 -12.19249 -12.08010 -11.92713 -11.57138 -11.45230 -10.73650 -10.64661 -10.53536 -10.02162 -9.84523 -9.72525 -9.48447 -9.31825 -8.94522 -8.82891 -8.36366 -7.16017 -5.69036 -3.02739 0.79795 1.16556 2.88359 3.21075 3.45896 3.56023 3.66824 3.84056 4.32185 4.58272 4.62596 4.71097 4.74768 4.92471 4.99242 5.14888 5.24204 5.28506 5.34519 5.48276 5.56278 5.57432 5.60749 5.70450 5.75617 5.82957 5.88699 6.02681 6.07866 6.15483 6.23015 6.43572 6.58613 6.68542 6.77146 7.02563 7.51474 7.94599 8.08672 8.36777 8.51003 9.33557 10.06225 10.27532 11.49019 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.007569 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.090189 B = 3698.195837 C = 4770.076652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.153 4.153 3 C 0.114 3.886 4 N -0.482 5.482 5 C 0.150 3.850 6 C -0.170 4.170 7 C 0.571 3.429 8 O -0.527 6.527 9 N -0.598 5.598 10 C 0.075 3.925 11 C 0.105 3.895 12 C 0.159 3.841 13 H 0.053 0.947 14 C -0.164 4.164 15 N -0.747 5.747 16 C -0.240 4.240 17 H 0.087 0.913 18 C 0.006 3.994 19 N -0.936 5.936 20 Si 0.872 3.128 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.267 1.267 24 C -0.056 4.056 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.167 0.833 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.373 0.627 39 H 0.258 0.742 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.654 -3.702 -8.342 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.155 4.155 3 C -0.044 4.044 4 N -0.189 5.189 5 C -0.007 4.007 6 C -0.175 4.175 7 C 0.358 3.642 8 O -0.404 6.404 9 N -0.329 5.329 10 C -0.068 4.068 11 C -0.018 4.018 12 C 0.049 3.951 13 H 0.071 0.929 14 C -0.224 4.224 15 N -0.393 5.393 16 C -0.370 4.370 17 H 0.105 0.895 18 C -0.190 4.190 19 N -0.584 5.584 20 Si 0.703 3.297 21 H -0.207 1.207 22 H -0.221 1.221 23 H -0.192 1.192 24 C -0.082 4.082 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.174 0.826 29 H 0.184 0.816 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.210 0.790 39 H 0.068 0.932 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.603 -2.882 -8.459 19.742 hybrid contribution -0.072 -0.159 -0.856 0.874 sum -17.676 -3.041 -9.315 20.210 Atomic orbital electron populations 1.20691 0.89833 1.03077 1.02711 1.20850 0.97679 0.93898 1.03071 1.22910 0.90140 0.97559 0.93774 1.67802 1.07864 1.30944 1.12285 1.23256 1.01311 0.86025 0.90103 1.20987 0.94507 0.95794 1.06176 1.17953 0.84522 0.82549 0.79149 1.90771 1.24212 1.82291 1.43079 1.47472 1.19948 1.15713 1.49807 1.22092 0.84218 1.03511 0.96962 1.21991 0.93353 0.85400 1.01030 1.20609 0.91487 0.87572 0.95470 0.92871 1.22371 1.00446 0.97377 1.02240 1.42990 1.64306 1.25118 1.06927 1.19044 1.26798 1.03879 0.87260 0.89539 1.24612 1.00248 0.97809 0.96319 1.69700 1.41458 1.20733 1.26476 0.86754 0.77374 0.79889 0.85662 1.20662 1.22098 1.19199 1.21977 0.92666 0.99072 0.94445 0.90757 0.91130 0.91358 0.82582 0.81599 0.92754 0.90521 0.90843 0.90298 0.89851 0.93387 0.92077 0.94199 0.79046 0.93215 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.03 36.01 0.36 -0.36 16 2 C -0.15 -1.69 5.89 -104.54 -0.62 -2.30 16 3 C 0.11 1.46 10.85 -17.46 -0.19 1.27 16 4 N -0.48 -8.26 10.35 -12.91 -0.13 -8.40 16 5 C 0.15 2.85 10.80 -17.13 -0.19 2.67 16 6 C -0.17 -2.87 5.29 -104.82 -0.55 -3.42 16 7 C 0.57 10.72 6.55 -12.33 -0.08 10.64 16 8 O -0.53 -11.76 14.51 5.32 0.08 -11.68 16 9 N -0.60 -9.45 2.77 -182.70 -0.51 -9.95 16 10 C 0.08 0.85 8.87 59.85 0.53 1.38 16 11 C 0.11 1.65 5.13 -4.04 -0.02 1.63 16 12 C 0.16 3.07 3.19 -67.94 -0.22 2.85 16 13 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 14 C -0.16 -2.86 9.49 37.16 0.35 -2.50 16 15 N -0.75 -18.57 4.33 -53.43 -0.23 -18.80 16 16 C -0.24 -6.98 10.41 -15.06 -0.16 -7.14 16 17 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 18 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 19 N -0.94 -30.39 13.97 55.49 0.78 -29.61 16 20 Si 0.87 23.97 27.65 -169.99 -4.70 19.27 16 21 H -0.28 -7.39 5.24 56.52 0.30 -7.10 16 22 H -0.29 -8.15 7.11 56.52 0.40 -7.75 16 23 H -0.27 -7.34 6.52 56.52 0.37 -6.98 16 24 C -0.06 -0.69 7.36 -38.87 -0.29 -0.98 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.40 8.09 -51.92 -0.42 -0.02 16 27 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.17 3.59 6.07 -52.49 -0.32 3.27 16 30 H 0.05 0.44 6.86 -51.93 -0.36 0.08 16 31 H 0.08 0.77 8.03 -51.93 -0.42 0.36 16 32 H 0.07 0.88 5.81 -51.93 -0.30 0.58 16 33 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.08 1.41 7.36 -51.93 -0.38 1.03 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.37 9.66 3.09 -40.82 -0.13 9.53 16 39 H 0.26 8.05 8.31 -40.82 -0.34 7.71 16 40 H 0.15 1.37 5.26 -52.48 -0.28 1.09 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -36.30 323.63 -6.67 -42.96 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.67 Total: 7.51 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.16 Total: 3.82 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -0.10 Total: -66.76 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.70 Total: 19.27 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.30 -6.67 -42.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277784251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.576 kcal (2) G-P(sol) polarization free energy of solvation -36.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds