Wall clock time and date at job start Mon Mar 30 2020 01:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38360 * 120.34530 * 2 1 4 4 N 1.31933 * 121.07473 * 180.02562 * 3 2 1 5 5 C 1.31687 * 121.88147 * 359.95653 * 4 3 2 6 6 C 1.39527 * 120.56663 * 0.03981 * 5 4 3 7 7 C 1.47843 * 120.55635 * 180.25241 * 6 5 4 8 8 O 1.21552 * 120.00201 * 322.02521 * 7 6 5 9 9 N 1.34773 * 119.99807 * 142.02204 * 7 6 5 10 10 C 1.46501 * 119.99887 * 4.86751 * 9 7 6 11 11 C 1.46503 * 120.00176 * 184.86523 * 9 7 6 12 12 C 1.52996 * 109.46959 * 89.99844 * 11 9 7 13 13 H 1.09004 * 109.46890 * 65.00666 * 12 11 9 14 14 C 1.52996 * 109.47206 * 185.00027 * 12 11 9 15 15 N 1.46497 * 109.47667 * 305.00345 * 12 11 9 16 16 C 1.36931 * 120.00297 * 154.99600 * 15 12 11 17 17 H 1.08001 * 119.99993 * 0.02562 * 16 15 12 18 18 C 1.38816 * 119.99965 * 180.02562 * 16 15 12 19 19 N 1.31618 * 120.00104 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00011 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47018 * 90.00035 * 20 18 16 22 22 H 1.48506 * 109.47182 * 210.00175 * 20 18 16 23 23 H 1.48502 * 109.47072 * 329.99825 * 20 18 16 24 24 C 1.38349 * 120.35186 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47237 * 269.98096 * 1 2 3 26 26 H 1.09008 * 109.47025 * 29.98193 * 1 2 3 27 27 H 1.08999 * 109.47076 * 149.97510 * 1 2 3 28 28 H 1.07995 * 119.46012 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.71502 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47285 * 84.79917 * 10 9 7 31 31 H 1.09003 * 109.46888 * 204.79547 * 10 9 7 32 32 H 1.08996 * 109.47191 * 324.79575 * 10 9 7 33 33 H 1.08992 * 109.47098 * 210.00099 * 11 9 7 34 34 H 1.08996 * 109.46700 * 330.00194 * 11 9 7 35 35 H 1.08999 * 109.46987 * 60.00158 * 14 12 11 36 36 H 1.08996 * 109.47695 * 180.02562 * 14 12 11 37 37 H 1.09007 * 109.47366 * 300.00507 * 14 12 11 38 38 H 0.97004 * 119.99640 * 334.99968 * 15 12 11 39 39 H 0.96995 * 120.00443 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.85023 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1016 -0.0002 6 6 3.6054 -1.1436 -0.0001 7 6 4.4023 -2.3888 0.0059 8 8 5.4315 -2.4548 -0.6375 9 7 3.9877 -3.4508 0.7247 10 6 2.6955 -3.4094 1.4137 11 6 4.8292 -4.6465 0.8170 12 6 5.7644 -4.5201 2.0212 13 1 5.1760 -4.5101 2.9387 14 6 6.7274 -5.7087 2.0460 15 7 6.5287 -3.2746 1.9175 16 6 7.0256 -2.6801 3.0466 17 1 6.8544 -3.1297 4.0135 18 6 7.7493 -1.4996 2.9483 19 7 8.2273 -0.9285 4.0335 20 14 8.0446 -0.7216 1.2760 21 1 6.9398 0.2209 0.9665 22 1 9.3338 0.0154 1.2936 23 1 8.0954 -1.7828 0.2384 24 6 2.2061 -1.1939 -0.0005 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6629 2.1275 0.0004 29 1 5.3135 0.1561 -0.0002 30 1 1.9049 -3.6979 0.7209 31 1 2.7106 -4.1011 2.2560 32 1 2.5095 -2.3987 1.7768 33 1 4.1978 -5.5266 0.9381 34 1 5.4203 -4.7458 -0.0933 35 1 7.3158 -5.7188 1.1285 36 1 7.3934 -5.6190 2.9041 37 1 6.1588 -6.6355 2.1231 38 1 6.6827 -2.8709 1.0490 39 1 8.7333 -0.1038 3.9649 40 1 1.6858 -2.1403 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277784251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:51 Heat of formation + Delta-G solvation = -2.026443 kcal Electronic energy + Delta-G solvation = -22400.440075 eV Core-core repulsion = 19215.026611 eV Total energy + Delta-G solvation = -3185.413464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.90775 -40.35720 -37.79582 -36.33775 -34.68194 -34.17915 -33.06580 -31.20174 -28.56258 -28.03004 -27.39594 -25.51901 -24.81948 -23.61458 -21.67872 -20.66164 -19.73102 -18.30285 -18.19359 -17.78712 -17.13195 -16.75931 -16.44526 -15.80470 -15.27412 -15.06779 -14.70004 -14.63421 -14.59960 -14.40916 -14.05174 -13.66071 -13.55451 -13.49066 -13.31276 -13.02489 -12.92102 -12.76272 -12.68170 -12.39515 -12.25255 -11.86319 -11.82973 -11.25562 -11.05290 -10.80142 -10.48195 -10.00961 -9.63740 -9.28930 -8.09097 -5.36064 -0.33695 0.11392 1.23717 1.27556 1.40972 1.58281 2.03959 2.39397 2.69321 3.22879 3.25192 3.48908 3.64542 3.74773 3.76499 3.90312 4.08018 4.20116 4.24485 4.40470 4.48831 4.54689 4.62631 4.65969 4.74869 4.84816 4.89381 4.91430 4.94201 5.00708 5.19033 5.21300 5.24422 5.40664 5.59314 5.64595 5.75457 6.17481 6.28428 6.81001 7.03160 7.09042 7.89737 8.04974 9.12624 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.007569 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.090189 B = 3698.195837 C = 4770.076652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.131 4.131 3 C 0.105 3.895 4 N -0.512 5.512 5 C 0.110 3.890 6 C -0.185 4.185 7 C 0.559 3.441 8 O -0.578 6.578 9 N -0.596 5.596 10 C 0.064 3.936 11 C 0.111 3.889 12 C 0.146 3.854 13 H 0.055 0.945 14 C -0.155 4.155 15 N -0.756 5.756 16 C -0.210 4.210 17 H 0.066 0.934 18 C -0.054 4.054 19 N -0.978 5.978 20 Si 0.925 3.075 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.272 1.272 24 C -0.046 4.046 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.192 0.808 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.135 0.865 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.032 0.968 37 H 0.088 0.912 38 H 0.369 0.631 39 H 0.255 0.745 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.229 -5.432 -9.155 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.133 4.133 3 C -0.052 4.052 4 N -0.220 5.220 5 C -0.047 4.047 6 C -0.191 4.191 7 C 0.347 3.653 8 O -0.458 6.458 9 N -0.326 5.326 10 C -0.077 4.077 11 C -0.012 4.012 12 C 0.037 3.963 13 H 0.073 0.927 14 C -0.215 4.215 15 N -0.402 5.402 16 C -0.342 4.342 17 H 0.084 0.916 18 C -0.245 4.245 19 N -0.630 5.630 20 Si 0.756 3.244 21 H -0.203 1.203 22 H -0.225 1.225 23 H -0.198 1.198 24 C -0.071 4.071 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.209 0.791 29 H 0.139 0.861 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.106 0.894 38 H 0.204 0.796 39 H 0.064 0.936 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -22.241 -4.676 -9.274 24.546 hybrid contribution 1.152 0.297 -0.561 1.315 sum -21.089 -4.378 -9.835 23.678 Atomic orbital electron populations 1.20841 0.85825 1.05079 1.04277 1.21380 1.00151 0.92430 0.99355 1.23615 0.88777 1.00147 0.92670 1.67688 1.10214 1.30609 1.13473 1.22710 0.99843 0.87977 0.94164 1.20908 0.96517 0.93978 1.07656 1.18400 0.84168 0.83663 0.79021 1.90724 1.26435 1.83259 1.45431 1.47649 1.21260 1.14798 1.48864 1.22462 0.83031 1.03769 0.98433 1.22001 0.93594 0.87348 0.98265 1.21025 0.92008 0.85659 0.97558 0.92659 1.22226 0.99966 0.98682 1.00645 1.43174 1.64792 1.27032 1.05234 1.19082 1.24444 1.02817 0.87850 0.91607 1.25141 1.01734 0.99103 0.98569 1.69816 1.43629 1.21525 1.28070 0.85905 0.76960 0.79078 0.82439 1.20254 1.22540 1.19756 1.22369 0.90518 1.01356 0.92881 0.89091 0.89373 0.89268 0.79117 0.86118 0.88200 0.88809 0.91682 0.84700 0.91354 0.94010 0.94834 0.89364 0.79556 0.93630 0.79931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.03 71.24 0.71 -0.09 16 2 C -0.13 -2.39 5.89 -19.81 -0.12 -2.51 16 3 C 0.11 2.49 10.85 84.71 0.92 3.41 16 4 N -0.51 -17.92 10.35 -194.75 -2.01 -19.93 16 5 C 0.11 4.39 10.80 85.03 0.92 5.31 16 6 C -0.19 -6.24 5.29 -19.99 -0.11 -6.35 16 7 C 0.56 20.95 6.55 86.79 0.57 21.52 16 8 O -0.58 -26.71 14.51 -3.88 -0.06 -26.76 16 9 N -0.60 -17.40 2.77 -850.22 -2.36 -19.76 16 10 C 0.06 1.16 8.87 127.77 1.13 2.29 16 11 C 0.11 3.15 5.13 86.38 0.44 3.59 16 12 C 0.15 5.40 3.19 44.99 0.14 5.55 16 13 H 0.06 2.03 8.08 -2.38 -0.02 2.01 16 14 C -0.16 -5.13 9.49 71.98 0.68 -4.45 16 15 N -0.76 -38.07 4.33 -322.95 -1.40 -39.46 16 16 C -0.21 -12.60 10.41 84.04 0.87 -11.72 16 17 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 18 C -0.05 -3.43 5.50 84.86 0.47 -2.96 16 19 N -0.98 -66.07 13.97 21.65 0.30 -65.77 16 20 Si 0.93 52.69 27.65 68.60 1.90 54.59 16 21 H -0.28 -15.41 5.24 99.48 0.52 -14.88 16 22 H -0.30 -16.93 7.11 99.48 0.71 -16.22 16 23 H -0.27 -15.50 6.52 99.48 0.65 -14.85 16 24 C -0.05 -0.99 7.36 22.73 0.17 -0.82 16 25 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.09 0.47 8.09 -2.38 -0.02 0.45 16 27 H 0.09 0.42 8.09 -2.39 -0.02 0.40 16 28 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.12 5.77 6.07 -2.91 -0.02 5.76 16 30 H 0.10 0.94 6.86 -2.39 -0.02 0.93 16 31 H 0.09 1.42 8.03 -2.39 -0.02 1.40 16 32 H 0.06 1.32 5.81 -2.39 -0.01 1.31 16 33 H 0.14 2.36 8.07 -2.39 -0.02 2.34 16 34 H 0.07 2.20 7.36 -2.39 -0.02 2.18 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.37 19.55 3.09 -92.71 -0.29 19.27 16 39 H 0.25 16.59 8.31 -92.71 -0.77 15.82 16 40 H 0.18 2.43 5.26 -2.91 -0.02 2.41 16 Total: -1.00 -87.40 323.63 3.70 -83.70 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.52 Total: 20.63 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.81 Total: 12.77 kcal Atomic # 7 Polarization: -139.45 SS G_CDS: -5.47 Total: -144.92 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.06 Total: -26.76 kcal Atomic # 14 Polarization: 52.69 SS G_CDS: 1.90 Total: 54.59 kcal Total: -87.40 3.70 -83.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277784251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.671 kcal (2) G-P(sol) polarization free energy of solvation -87.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds