Wall clock time and date at job start Mon Mar 30 2020 01:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.79761 * 2 1 4 4 N 1.46505 * 109.47278 * 56.70400 * 3 2 1 5 5 C 1.36933 * 120.00282 * 180.02562 * 4 3 2 6 6 H 1.08006 * 119.99979 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00105 * 180.02562 * 5 4 3 8 8 N 1.31615 * 120.00309 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00073 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47103 * 89.99589 * 9 7 5 11 11 H 1.48493 * 109.47206 * 209.99769 * 9 7 5 12 12 H 1.48502 * 109.46980 * 329.99776 * 9 7 5 13 13 C 1.54612 * 110.74551 * 236.70688 * 2 1 3 14 14 C 1.53998 * 105.04474 * 263.51289 * 13 2 1 15 15 N 1.47484 * 107.08513 * 1.30301 * 14 13 2 16 16 C 1.34780 * 127.03591 * 154.28839 * 15 14 13 17 17 O 1.21690 * 120.00234 * 178.06082 * 16 15 14 18 18 C 1.46681 * 119.99534 * 358.06753 * 16 15 14 19 19 C 1.37871 * 126.23006 * 188.00397 * 18 16 15 20 20 C 1.39838 * 107.08703 * 179.97438 * 19 18 16 21 21 C 1.35448 * 107.86282 * 359.97438 * 20 19 18 22 22 N 1.35541 * 108.87232 * 359.73373 * 21 20 19 23 23 H 0.96995 * 125.67507 * 180.30989 * 22 21 20 24 24 C 1.48114 * 105.93318 * 334.55472 * 15 14 13 25 25 H 1.09000 * 109.46597 * 183.28831 * 1 2 3 26 26 H 1.08993 * 109.47669 * 303.29222 * 1 2 3 27 27 H 1.09005 * 109.46962 * 63.29562 * 1 2 3 28 28 H 1.09005 * 109.47334 * 176.70355 * 3 2 1 29 29 H 1.09000 * 109.46981 * 296.70578 * 3 2 1 30 30 H 0.97004 * 119.99762 * 0.02562 * 4 3 2 31 31 H 0.96997 * 120.00717 * 179.97438 * 8 7 5 32 32 H 1.09000 * 110.32630 * 144.61678 * 13 2 1 33 33 H 1.08996 * 110.41136 * 22.44690 * 13 2 1 34 34 H 1.09009 * 109.91338 * 241.94448 * 14 13 2 35 35 H 1.08997 * 110.07589 * 120.75649 * 14 13 2 36 36 H 1.08002 * 126.46072 * 359.96022 * 19 18 16 37 37 H 1.07996 * 126.06650 * 179.97438 * 20 19 18 38 38 H 1.08003 * 125.56741 * 179.97438 * 21 20 19 39 39 H 1.09000 * 110.66705 * 157.73316 * 24 15 14 40 40 H 1.09006 * 110.66135 * 280.84849 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0732 1.4303 0.0000 4 7 1.5378 2.1561 1.1545 5 6 1.8870 3.4636 1.3634 6 1 2.5568 3.9600 0.6768 7 6 1.3801 4.1511 2.4575 8 7 0.5634 3.5464 3.2940 9 14 1.8558 5.9349 2.7421 10 1 0.8870 6.8221 2.0497 11 1 1.8398 6.2253 4.1983 12 1 3.2190 6.1754 2.2044 13 6 2.0776 -0.7937 -1.2086 14 6 2.3764 -2.2014 -0.6602 15 7 1.9871 -2.2038 0.7624 16 6 1.6180 -3.2688 1.5012 17 8 1.3548 -3.1292 2.6811 18 6 1.5337 -4.5964 0.8831 19 6 1.0268 -5.7371 1.4685 20 6 1.1400 -6.7663 0.5286 21 6 1.7009 -6.2477 -0.5899 22 7 1.9393 -4.9285 -0.3896 23 1 2.3323 -4.3204 -1.0350 24 6 2.0786 -0.7953 1.2113 25 1 -0.3632 -1.0260 0.0589 26 1 -0.3634 0.5640 0.8589 27 1 -0.3633 0.4618 -0.9181 28 1 3.1614 1.4057 0.0591 29 1 1.7705 1.9339 -0.9180 30 1 0.9359 1.7104 1.7710 31 1 0.2094 4.0267 4.0588 32 1 2.9910 -0.3313 -1.5827 33 1 1.3294 -0.8464 -1.9994 34 1 3.4405 -2.4184 -0.7543 35 1 1.7962 -2.9461 -1.2050 36 1 0.6194 -5.8203 2.4652 37 1 0.8343 -7.7925 0.6695 38 1 1.9189 -6.7950 -1.4951 39 1 1.4579 -0.6312 2.0922 40 1 3.1145 -0.5224 1.4133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278456391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:22 Heat of formation + Delta-G solvation = 12.780102 kcal Electronic energy + Delta-G solvation = -21657.713769 eV Core-core repulsion = 18472.942365 eV Total energy + Delta-G solvation = -3184.771404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.39054 -40.83568 -39.10034 -36.56292 -34.45523 -32.36776 -32.01299 -30.53551 -30.36008 -27.92606 -27.18240 -25.39619 -23.79512 -22.58983 -21.67356 -21.02863 -20.23358 -19.38730 -18.40471 -17.39189 -17.26859 -16.55703 -16.23806 -15.68569 -15.48692 -15.32475 -14.97755 -14.84585 -14.61785 -14.32952 -13.97474 -13.65973 -13.58165 -13.46534 -13.18362 -13.03644 -12.90413 -12.80005 -12.59102 -12.15956 -12.09993 -11.77483 -11.53817 -11.46871 -11.27615 -10.93481 -10.02863 -9.86133 -9.17441 -8.98062 -7.93706 -5.22578 0.43277 1.46671 1.48783 1.57163 1.74571 1.83398 2.23536 2.31236 2.56443 3.31061 3.40766 3.49320 3.70736 3.82598 4.08123 4.13772 4.24377 4.29927 4.36387 4.41007 4.48628 4.51471 4.65344 4.73110 4.77488 4.92411 4.96773 5.01138 5.08537 5.12358 5.21700 5.28919 5.32146 5.42450 5.51015 5.75863 5.92476 6.27676 6.40722 6.55287 6.97798 7.34071 8.11544 8.32548 9.30023 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036731 B = 0.003730 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.119664 B = 7505.015056 C = 7965.459036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.071 4.071 3 C 0.167 3.833 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.081 0.919 7 C -0.080 4.080 8 N -0.973 5.973 9 Si 0.974 3.026 10 H -0.287 1.287 11 H -0.300 1.300 12 H -0.266 1.266 13 C -0.111 4.111 14 C 0.088 3.912 15 N -0.618 5.618 16 C 0.594 3.406 17 O -0.587 6.587 18 C -0.078 4.078 19 C -0.128 4.128 20 C -0.227 4.227 21 C 0.047 3.953 22 N -0.531 5.531 23 H 0.429 0.571 24 C 0.123 3.877 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.029 0.971 29 H 0.034 0.966 30 H 0.372 0.628 31 H 0.249 0.751 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.164 0.836 38 H 0.220 0.780 39 H 0.044 0.956 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 -20.486 -16.840 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.073 4.073 3 C 0.041 3.959 4 N -0.389 5.389 5 C -0.373 4.373 6 H 0.098 0.902 7 C -0.272 4.272 8 N -0.624 5.624 9 Si 0.803 3.197 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.191 1.191 13 C -0.149 4.149 14 C -0.034 4.034 15 N -0.351 5.351 16 C 0.386 3.614 17 O -0.468 6.468 18 C -0.191 4.191 19 C -0.156 4.156 20 C -0.250 4.250 21 C -0.090 4.090 22 N -0.134 5.134 23 H 0.275 0.725 24 C 0.000 4.000 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.205 0.795 31 H 0.058 0.942 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.148 0.852 37 H 0.182 0.818 38 H 0.237 0.763 39 H 0.063 0.937 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.825 -20.171 -16.335 26.401 hybrid contribution -0.206 1.409 1.145 1.828 sum 4.620 -18.762 -15.189 24.578 Atomic orbital electron populations 1.21612 0.94118 1.00450 1.01801 1.21728 0.95916 0.94417 0.95209 1.20827 0.95829 0.89309 0.89970 1.42668 1.56719 1.10509 1.28992 1.19670 1.21874 0.89110 1.06650 0.90161 1.25597 1.00825 1.02594 0.98138 1.69840 1.37954 1.37846 1.16731 0.85127 0.78199 0.80122 0.76235 1.21392 1.22693 1.19116 1.22580 1.03679 0.92391 0.96266 1.22649 1.01750 0.99517 0.79463 1.48775 1.66349 1.06963 1.12985 1.17230 0.76267 0.82896 0.85014 1.90829 1.53180 1.85488 1.17332 1.19974 1.16216 0.93923 0.88957 1.21525 1.01831 0.91868 1.00361 1.21221 1.09332 1.00391 0.94040 1.22859 1.01345 0.83012 1.01800 1.42776 1.48134 1.10915 1.11581 0.72455 1.22379 1.00574 0.79493 0.97550 0.93083 0.95213 0.91001 0.95268 0.94768 0.79512 0.94205 0.87754 0.87884 0.88316 0.88901 0.85174 0.81838 0.76327 0.93721 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.33 71.98 0.60 -3.38 16 2 C -0.07 -2.14 0.65 -50.97 -0.03 -2.17 16 3 C 0.17 6.21 5.11 86.38 0.44 6.65 16 4 N -0.75 -37.72 5.16 -343.43 -1.77 -39.50 16 5 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 6 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 7 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 8 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 9 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 C -0.11 -1.97 6.09 31.48 0.19 -1.78 16 14 C 0.09 1.44 5.64 86.53 0.49 1.93 16 15 N -0.62 -17.61 3.19 -814.08 -2.60 -20.21 16 16 C 0.59 20.03 7.86 86.45 0.68 20.71 16 17 O -0.59 -26.05 17.11 -4.32 -0.07 -26.12 16 18 C -0.08 -2.00 6.87 40.35 0.28 -1.72 16 19 C -0.13 -3.21 10.66 22.57 0.24 -2.97 16 20 C -0.23 -3.72 10.81 22.01 0.24 -3.48 16 21 C 0.05 0.52 11.89 83.48 0.99 1.51 16 22 N -0.53 -7.92 5.43 -183.62 -1.00 -8.92 16 23 H 0.43 3.87 5.28 -92.71 -0.49 3.38 16 24 C 0.12 4.26 5.67 86.73 0.49 4.75 16 25 H 0.05 1.56 8.07 -2.39 -0.02 1.54 16 26 H 0.03 1.20 6.69 -2.39 -0.02 1.19 16 27 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.03 1.06 8.10 -2.38 -0.02 1.04 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.37 20.70 6.21 -92.71 -0.58 20.13 16 31 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.10 1.50 7.85 -2.39 -0.02 1.48 16 33 H 0.10 1.41 7.87 -2.39 -0.02 1.39 16 34 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.09 1.03 5.43 -2.39 -0.01 1.01 16 36 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.22 0.23 8.06 -2.91 -0.02 0.20 16 39 H 0.04 1.96 7.78 -2.39 -0.02 1.94 16 40 H 0.07 2.52 8.02 -2.38 -0.02 2.50 16 Total: -1.00 -80.49 325.90 2.78 -77.71 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.01 Total: 26.24 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 5.91 Total: 3.24 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -5.08 Total: -129.98 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.07 Total: -26.12 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -80.49 2.78 -77.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278456391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.494 kcal (2) G-P(sol) polarization free energy of solvation -80.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds