Wall clock time and date at job start Mon Mar 30 2020 01:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 110.77959 * 2 1 4 4 N 1.46496 * 109.47458 * 298.21755 * 3 2 1 5 5 C 1.36934 * 120.00151 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99707 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00060 * 180.02562 * 5 4 3 8 8 N 1.31621 * 120.00181 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00202 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47299 * 59.99080 * 9 7 5 11 11 H 1.48491 * 109.47353 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46739 * 299.99723 * 9 7 5 13 13 C 1.55158 * 110.72042 * 123.24363 * 2 1 3 14 14 C 1.54912 * 101.58133 * 82.86047 * 13 2 1 15 15 N 1.47426 * 104.83317 * 37.00670 * 14 13 2 16 16 C 1.34774 * 125.64697 * 155.84926 * 15 14 13 17 17 O 1.21696 * 120.00002 * 178.16134 * 16 15 14 18 18 C 1.46676 * 120.00082 * 358.15879 * 16 15 14 19 19 C 1.37872 * 126.23847 * 188.04617 * 18 16 15 20 20 C 1.39830 * 107.08776 * 180.02562 * 19 18 16 21 21 C 1.35449 * 107.86622 * 0.02562 * 20 19 18 22 22 N 1.35533 * 108.87158 * 359.73369 * 21 20 19 23 23 H 0.96995 * 125.67644 * 180.29993 * 22 21 20 24 24 C 1.47019 * 108.70562 * 335.87273 * 15 14 13 25 25 H 1.09005 * 109.47108 * 181.78368 * 1 2 3 26 26 H 1.09001 * 109.46897 * 301.77968 * 1 2 3 27 27 H 1.09006 * 109.47446 * 61.78254 * 1 2 3 28 28 H 1.09004 * 109.46619 * 58.21998 * 3 2 1 29 29 H 1.08997 * 109.46722 * 178.21610 * 3 2 1 30 30 H 0.97003 * 120.00054 * 0.02562 * 4 3 2 31 31 H 0.96998 * 120.00372 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.99934 * 324.78598 * 13 2 1 33 33 H 1.08993 * 111.00293 * 200.93325 * 13 2 1 34 34 H 1.09003 * 110.36172 * 278.16940 * 14 13 2 35 35 H 1.09003 * 110.36619 * 155.84876 * 14 13 2 36 36 H 1.08005 * 126.44772 * 359.97166 * 19 18 16 37 37 H 1.08007 * 126.06724 * 179.97438 * 20 19 18 38 38 H 1.07999 * 125.56003 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.88739 * 120.47247 * 24 15 14 40 40 H 1.08996 * 109.88659 * 241.49127 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 7 1.6355 2.1188 -1.2170 5 6 2.0030 3.4193 -1.4377 6 1 2.6149 3.9377 -0.7143 7 6 1.5882 4.0717 -2.5906 8 7 0.8421 3.4401 -3.4720 9 14 2.0901 5.8455 -2.8921 10 1 3.5714 5.9397 -2.9397 11 1 1.5233 6.3075 -4.1845 12 1 1.5750 6.6994 -1.7917 13 6 2.0790 -0.7956 1.2137 14 6 2.0126 -2.2510 0.6873 15 7 2.3715 -2.1531 -0.7392 16 6 2.8859 -3.1474 -1.4898 17 8 3.1141 -2.9626 -2.6708 18 6 3.1706 -4.4521 -0.8831 19 6 3.8345 -5.5018 -1.4817 20 6 3.8818 -6.5431 -0.5497 21 6 3.2593 -6.1210 0.5768 22 7 2.8275 -4.8501 0.3892 23 1 2.3540 -4.3113 1.0421 24 6 2.0760 -0.7912 -1.2074 25 1 -0.3633 -1.0272 0.0320 26 1 -0.3633 0.5412 0.8736 27 1 -0.3634 0.4859 -0.9056 28 1 1.6956 1.9621 0.8736 29 1 3.1620 1.4057 0.0320 30 1 1.0857 1.6533 -1.8666 31 1 0.5519 3.8960 -4.2774 32 1 1.4396 -0.6663 2.0870 33 1 3.1061 -0.5075 1.4374 34 1 1.0038 -2.6488 0.7983 35 1 2.7293 -2.8789 1.2167 36 1 4.2406 -5.5171 -2.4824 37 1 4.3337 -7.5122 -0.7014 38 1 3.1318 -6.7011 1.4788 39 1 2.9867 -0.3206 -1.5777 40 1 1.3282 -0.8256 -1.9997 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278456392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:25 Heat of formation + Delta-G solvation = 10.768568 kcal Electronic energy + Delta-G solvation = -21615.274853 eV Core-core repulsion = 18430.416223 eV Total energy + Delta-G solvation = -3184.858630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.42116 -40.87582 -39.15356 -36.57980 -34.51421 -32.41567 -32.06567 -30.53569 -30.26870 -27.88120 -27.22148 -25.42099 -23.82096 -22.61812 -21.69496 -21.03577 -20.22763 -19.35633 -18.48491 -17.54083 -17.11690 -16.67586 -16.29146 -15.73686 -15.49411 -15.27067 -14.95657 -14.90094 -14.66641 -14.28635 -13.95239 -13.69606 -13.49043 -13.36755 -13.19552 -13.12087 -12.90917 -12.85013 -12.70669 -12.22916 -12.05044 -11.84402 -11.56373 -11.45606 -11.29060 -10.94387 -10.03661 -9.86388 -9.17551 -9.00159 -7.95469 -5.24288 0.42243 1.45363 1.48989 1.55006 1.74641 1.82909 2.23020 2.30550 2.55131 3.28388 3.38872 3.42672 3.66240 3.79354 4.07533 4.12433 4.23934 4.29383 4.36528 4.37303 4.43569 4.51788 4.69365 4.73039 4.82882 4.92025 4.99351 5.00464 5.08836 5.15471 5.16565 5.25218 5.30161 5.45923 5.49208 5.75457 5.92021 6.26068 6.36314 6.54853 6.96147 7.32632 8.09276 8.31030 9.27939 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032538 B = 0.003770 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.330903 B = 7424.710898 C = 7915.347005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.068 4.068 3 C 0.166 3.834 4 N -0.744 5.744 5 C -0.246 4.246 6 H 0.078 0.922 7 C -0.077 4.077 8 N -0.971 5.971 9 Si 0.974 3.026 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.274 1.274 13 C -0.108 4.108 14 C 0.084 3.916 15 N -0.615 5.615 16 C 0.588 3.412 17 O -0.588 6.588 18 C -0.079 4.079 19 C -0.127 4.127 20 C -0.227 4.227 21 C 0.048 3.952 22 N -0.532 5.532 23 H 0.430 0.570 24 C 0.128 3.872 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.039 0.961 29 H 0.015 0.985 30 H 0.373 0.627 31 H 0.250 0.750 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.165 0.835 38 H 0.221 0.779 39 H 0.038 0.962 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.863 -20.514 17.580 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.069 4.069 3 C 0.040 3.960 4 N -0.387 5.387 5 C -0.378 4.378 6 H 0.096 0.904 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.803 3.197 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.199 1.199 13 C -0.146 4.146 14 C -0.037 4.037 15 N -0.348 5.348 16 C 0.380 3.620 17 O -0.469 6.469 18 C -0.191 4.191 19 C -0.155 4.155 20 C -0.250 4.250 21 C -0.089 4.089 22 N -0.135 5.135 23 H 0.276 0.724 24 C 0.005 3.995 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.033 0.967 30 H 0.206 0.794 31 H 0.059 0.941 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.148 0.852 37 H 0.182 0.818 38 H 0.238 0.762 39 H 0.057 0.943 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.988 -20.153 17.077 26.490 hybrid contribution -0.063 1.435 -1.267 1.915 sum 1.925 -18.718 15.810 24.577 Atomic orbital electron populations 1.21691 0.92380 1.02006 1.02127 1.21716 0.96936 0.93929 0.94367 1.20821 0.95806 0.90152 0.89241 1.42583 1.62388 1.11445 1.22262 1.19620 1.25279 0.89787 1.03095 0.90447 1.25587 1.01343 1.02621 0.97366 1.69822 1.42211 1.38163 1.11952 0.85202 0.77692 0.80073 0.76732 1.20664 1.22372 1.19935 1.22890 1.03304 0.91356 0.97048 1.22935 1.02084 0.99603 0.79110 1.48509 1.62514 1.10984 1.12749 1.17329 0.76688 0.82913 0.85030 1.90826 1.55907 1.82813 1.17371 1.19937 1.14688 0.95522 0.88982 1.21525 1.00721 0.92932 1.00311 1.21226 1.08849 1.00909 0.94000 1.22872 0.99338 0.84910 1.01783 1.42814 1.45076 1.14091 1.11494 0.72375 1.21817 0.98918 0.81359 0.97368 0.90968 0.90562 0.94996 0.94361 0.96709 0.79419 0.94102 0.85554 0.89902 0.88097 0.88288 0.85172 0.81792 0.76237 0.94302 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 8.26 71.98 0.59 -2.88 16 2 C -0.07 -2.02 0.61 -50.99 -0.03 -2.05 16 3 C 0.17 6.38 5.07 86.38 0.44 6.82 16 4 N -0.74 -38.05 5.15 -343.46 -1.77 -39.82 16 5 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 7 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 8 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 9 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 C -0.11 -1.95 6.02 31.99 0.19 -1.75 16 14 C 0.08 1.39 5.14 86.86 0.45 1.84 16 15 N -0.62 -18.08 3.33 -816.47 -2.72 -20.80 16 16 C 0.59 20.23 7.81 86.45 0.68 20.91 16 17 O -0.59 -26.54 17.22 -4.34 -0.07 -26.61 16 18 C -0.08 -2.03 6.84 40.35 0.28 -1.76 16 19 C -0.13 -3.19 10.66 22.57 0.24 -2.95 16 20 C -0.23 -3.69 10.81 22.01 0.24 -3.45 16 21 C 0.05 0.52 11.89 83.48 0.99 1.52 16 22 N -0.53 -7.90 5.38 -183.62 -0.99 -8.89 16 23 H 0.43 3.82 5.21 -92.71 -0.48 3.33 16 24 C 0.13 4.67 5.47 86.73 0.47 5.15 16 25 H 0.07 1.61 7.44 -2.38 -0.02 1.59 16 26 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.03 1.14 7.13 -2.38 -0.02 1.12 16 28 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.02 0.59 8.13 -2.39 -0.02 0.57 16 30 H 0.37 20.66 6.38 -92.71 -0.59 20.06 16 31 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.13 1.41 8.04 -2.39 -0.02 1.39 16 33 H 0.08 1.53 8.04 -2.39 -0.02 1.51 16 34 H 0.10 1.18 7.68 -2.39 -0.02 1.16 16 35 H 0.10 1.09 5.53 -2.39 -0.01 1.07 16 36 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.22 0.17 8.06 -2.91 -0.02 0.14 16 39 H 0.04 1.69 7.82 -2.39 -0.02 1.68 16 40 H 0.04 1.77 7.85 -2.39 -0.02 1.76 16 Total: -1.00 -81.81 324.96 2.59 -79.22 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.02 Total: 24.51 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 5.84 Total: 4.23 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -5.19 Total: -130.59 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.07 Total: -26.61 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -81.81 2.59 -79.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278456392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.991 kcal (2) G-P(sol) polarization free energy of solvation -81.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds