Wall clock time and date at job start Mon Mar 30 2020 01:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34659 * 125.79580 * 2 1 4 4 H 0.97001 * 124.85565 * 0.02941 * 3 2 1 5 5 C 1.36451 * 110.29269 * 180.29622 * 3 2 1 6 6 C 1.34488 * 108.85533 * 359.75329 * 5 3 2 7 7 C 1.36761 * 125.80269 * 179.87236 * 2 1 3 8 8 C 1.47271 * 126.94232 * 359.97438 * 7 2 1 9 9 O 1.21619 * 120.00103 * 359.71066 * 8 7 2 10 10 N 1.34780 * 119.99758 * 179.71418 * 8 7 2 11 11 C 1.46497 * 119.99653 * 180.02562 * 10 8 7 12 12 C 1.53786 * 113.61643 * 105.85894 * 11 10 8 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 11 10 14 14 C 1.52994 * 113.66220 * 139.93548 * 13 12 11 15 15 N 1.46498 * 109.47402 * 87.44478 * 14 13 12 16 16 C 1.36937 * 120.00198 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00341 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99782 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47203 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47103 * 120.00336 * 20 18 16 23 23 H 1.48503 * 109.46916 * 239.99992 * 20 18 16 24 24 C 1.53781 * 113.61305 * 203.46742 * 11 10 8 25 25 H 1.09003 * 109.46792 * 270.13138 * 1 2 3 26 26 H 1.08995 * 109.47476 * 30.13100 * 1 2 3 27 27 H 1.09003 * 109.46962 * 150.13310 * 1 2 3 28 28 H 1.07997 * 125.57148 * 179.72934 * 5 3 2 29 29 H 1.08008 * 126.83122 * 180.02562 * 6 5 3 30 30 H 0.96995 * 120.00200 * 359.97438 * 10 8 7 31 31 H 1.09002 * 112.84935 * 334.66222 * 11 10 8 32 32 H 1.08993 * 113.61491 * 203.74894 * 12 11 10 33 33 H 1.09000 * 113.61138 * 334.65232 * 12 11 10 34 34 H 1.09002 * 113.61454 * 270.79954 * 13 12 11 35 35 H 1.09005 * 109.46709 * 207.43538 * 14 13 12 36 36 H 1.08998 * 109.47556 * 327.43829 * 14 13 12 37 37 H 0.97001 * 120.00130 * 359.97438 * 15 14 13 38 38 H 0.97001 * 120.00336 * 179.97438 * 19 18 16 39 39 H 1.09001 * 113.61695 * 25.34675 * 24 11 10 40 40 H 1.08996 * 113.61580 * 156.16953 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2946 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0066 6 6 3.6881 -0.6151 -0.0055 7 6 2.3071 -1.1092 0.0025 8 6 1.8702 -2.5156 0.0061 9 8 0.6840 -2.7839 0.0125 10 7 2.7850 -3.5054 0.0024 11 6 2.3505 -4.9044 0.0055 12 6 2.5289 -5.6079 -1.3503 13 6 3.9417 -5.9922 -0.8740 14 6 4.3545 -7.4138 -1.2606 15 7 4.9598 -7.4009 -2.5946 16 6 5.4093 -8.5673 -3.1539 17 1 5.3180 -9.4967 -2.6114 18 6 5.9824 -8.5551 -4.4181 19 7 6.0943 -7.4224 -5.0791 20 14 6.5950 -10.1463 -5.1813 21 1 6.3554 -11.2705 -4.2412 22 1 5.8674 -10.3985 -6.4510 23 1 8.0497 -10.0346 -5.4582 24 6 3.4047 -5.8757 0.5623 25 1 -0.3633 0.0024 1.0277 26 1 -0.3634 0.8887 -0.5158 27 1 -0.3633 -0.8912 -0.5118 28 1 4.4496 1.4061 -0.0122 29 1 4.5890 -1.2109 -0.0093 30 1 3.7311 -3.2914 -0.0030 31 1 1.3600 -5.0390 0.4402 32 1 1.8673 -6.4629 -1.4890 33 1 2.5243 -4.9255 -2.2002 34 1 4.7017 -5.2498 -1.1177 35 1 5.0773 -7.7916 -0.5374 36 1 3.4756 -8.0585 -1.2666 37 1 5.0423 -6.5662 -3.0818 38 1 6.4951 -7.4139 -5.9624 39 1 4.1061 -5.4092 1.2541 40 1 2.9829 -6.8034 0.9487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282000546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:54 Heat of formation + Delta-G solvation = 32.560837 kcal Electronic energy + Delta-G solvation = -20713.658655 eV Core-core repulsion = 17529.745009 eV Total energy + Delta-G solvation = -3183.913647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.41580 -39.73559 -37.88996 -34.44373 -33.07773 -31.70960 -31.23606 -30.56881 -27.01488 -26.31993 -25.38619 -23.68410 -22.57737 -21.33699 -20.83643 -19.57690 -18.88129 -17.88501 -16.98267 -16.06534 -15.77397 -15.23935 -14.79891 -14.40828 -14.30877 -13.94740 -13.74161 -13.43904 -13.23742 -13.21255 -12.89472 -12.74195 -12.67194 -12.24341 -12.01258 -11.75556 -11.50529 -10.97670 -10.80355 -10.37262 -10.24792 -9.99700 -9.75553 -9.73002 -9.53306 -9.08682 -8.83655 -8.74601 -8.34844 -6.84035 -5.70649 -2.98489 1.64606 2.24429 2.88061 3.46113 3.46961 3.52395 3.54802 3.58378 4.61899 4.63448 4.77017 4.80832 4.94716 4.98759 5.06680 5.23988 5.26882 5.33542 5.42956 5.63859 5.66896 5.75805 5.85577 5.96181 6.04326 6.06677 6.13524 6.21835 6.37909 6.44828 6.53554 6.55509 6.71307 6.80144 6.87890 7.03993 7.20477 7.73489 7.75920 8.44982 8.48673 9.59590 10.19724 10.54176 11.52467 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.003079 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.727204 B = 9091.561809 C = 9564.684138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.104 3.896 3 N -0.554 5.554 4 H 0.415 0.585 5 C -0.019 4.019 6 C -0.166 4.166 7 C -0.235 4.235 8 C 0.593 3.407 9 O -0.554 6.554 10 N -0.705 5.705 11 C 0.119 3.881 12 C -0.139 4.139 13 C -0.113 4.113 14 C 0.162 3.838 15 N -0.732 5.732 16 C -0.236 4.236 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.138 4.138 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.169 0.831 29 H 0.146 0.854 30 H 0.400 0.600 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.018 0.982 36 H 0.020 0.980 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.068 0.932 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 18.734 13.804 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.014 4.014 3 N -0.150 5.150 4 H 0.251 0.749 5 C -0.146 4.146 6 C -0.190 4.190 7 C -0.245 4.245 8 C 0.382 3.618 9 O -0.434 6.434 10 N -0.354 5.354 11 C 0.014 3.986 12 C -0.178 4.178 13 C -0.132 4.132 14 C 0.035 3.965 15 N -0.376 5.376 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.177 4.177 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.187 0.813 29 H 0.164 0.836 30 H 0.235 0.765 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.217 0.783 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.769 18.470 13.799 24.667 hybrid contribution 1.032 -0.015 -0.772 1.289 sum -7.738 18.455 13.027 23.878 Atomic orbital electron populations 1.20578 0.87005 1.04272 1.03384 1.20346 0.93734 0.85647 1.01673 1.41600 1.06303 1.08360 1.58767 0.74877 1.21723 0.85626 0.96496 1.10737 1.22087 0.95892 0.93743 1.07315 1.20154 0.93270 0.92108 1.18924 1.17317 0.85293 0.84009 0.75150 1.90713 1.16687 1.84441 1.51552 1.45444 1.09651 1.05217 1.75117 1.21885 0.98828 0.79843 0.98093 1.23441 0.97366 1.00235 0.96732 1.22779 0.96571 0.99218 0.94602 1.20639 0.95265 0.92370 0.88238 1.42369 1.72125 1.08245 1.14874 1.19300 1.31382 0.87604 0.98469 0.91205 1.24737 1.02170 0.96896 0.97411 1.69673 1.50613 1.24317 1.13705 0.86126 0.78175 0.82886 0.79080 1.20594 1.21925 1.21944 1.23304 0.97931 0.99247 0.97212 0.90513 0.91938 0.87897 0.81346 0.83611 0.76497 0.88455 0.89268 0.91349 0.89476 0.96459 0.96233 0.78320 0.93656 0.91331 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.88 36.01 0.36 -0.49 16 2 C 0.10 1.08 7.17 -81.89 -0.59 0.49 16 3 N -0.55 -4.11 5.90 -9.11 -0.05 -4.17 16 4 H 0.41 1.64 8.96 -40.82 -0.37 1.27 16 5 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 6 C -0.17 -1.67 10.56 -37.50 -0.40 -2.07 16 7 C -0.23 -2.91 6.29 -103.35 -0.65 -3.56 16 8 C 0.59 8.65 7.81 -12.59 -0.10 8.55 16 9 O -0.55 -9.50 14.43 5.26 0.08 -9.42 16 10 N -0.70 -9.27 5.26 -54.14 -0.28 -9.56 16 11 C 0.12 1.64 4.30 -67.12 -0.29 1.36 16 12 C -0.14 -2.22 7.45 -25.82 -0.19 -2.41 16 13 C -0.11 -1.84 3.64 -89.71 -0.33 -2.17 16 14 C 0.16 3.33 6.10 -4.05 -0.02 3.31 16 15 N -0.73 -19.07 5.60 -59.91 -0.34 -19.41 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 18 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 19 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 20 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 C -0.14 -1.79 7.38 -25.92 -0.19 -1.98 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 1.17 6.47 -51.93 -0.34 0.84 16 28 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.15 1.24 7.70 -52.48 -0.40 0.84 16 30 H 0.40 4.56 7.83 -40.82 -0.32 4.24 16 31 H 0.10 1.41 7.50 -51.93 -0.39 1.02 16 32 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 37 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 38 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -34.97 336.12 -8.55 -43.52 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.87 Total: 11.11 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.85 Total: -6.84 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.05 Total: -61.26 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.97 -8.55 -43.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282000546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.081 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds