Wall clock time and date at job start Mon Mar 30 2020 01:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34659 * 125.79580 * 2 1 4 4 H 0.97001 * 124.85565 * 0.02941 * 3 2 1 5 5 C 1.36451 * 110.29269 * 180.29622 * 3 2 1 6 6 C 1.34488 * 108.85533 * 359.75329 * 5 3 2 7 7 C 1.36761 * 125.80269 * 179.87236 * 2 1 3 8 8 C 1.47271 * 126.94232 * 359.97438 * 7 2 1 9 9 O 1.21619 * 120.00103 * 359.71066 * 8 7 2 10 10 N 1.34780 * 119.99758 * 179.71418 * 8 7 2 11 11 C 1.46497 * 119.99653 * 180.02562 * 10 8 7 12 12 C 1.53786 * 113.61643 * 105.85894 * 11 10 8 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 11 10 14 14 C 1.52994 * 113.66220 * 139.93548 * 13 12 11 15 15 N 1.46498 * 109.47402 * 87.44478 * 14 13 12 16 16 C 1.36937 * 120.00198 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00341 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99782 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47203 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47103 * 120.00336 * 20 18 16 23 23 H 1.48503 * 109.46916 * 239.99992 * 20 18 16 24 24 C 1.53781 * 113.61305 * 203.46742 * 11 10 8 25 25 H 1.09003 * 109.46792 * 270.13138 * 1 2 3 26 26 H 1.08995 * 109.47476 * 30.13100 * 1 2 3 27 27 H 1.09003 * 109.46962 * 150.13310 * 1 2 3 28 28 H 1.07997 * 125.57148 * 179.72934 * 5 3 2 29 29 H 1.08008 * 126.83122 * 180.02562 * 6 5 3 30 30 H 0.96995 * 120.00200 * 359.97438 * 10 8 7 31 31 H 1.09002 * 112.84935 * 334.66222 * 11 10 8 32 32 H 1.08993 * 113.61491 * 203.74894 * 12 11 10 33 33 H 1.09000 * 113.61138 * 334.65232 * 12 11 10 34 34 H 1.09002 * 113.61454 * 270.79954 * 13 12 11 35 35 H 1.09005 * 109.46709 * 207.43538 * 14 13 12 36 36 H 1.08998 * 109.47556 * 327.43829 * 14 13 12 37 37 H 0.97001 * 120.00130 * 359.97438 * 15 14 13 38 38 H 0.97001 * 120.00336 * 179.97438 * 19 18 16 39 39 H 1.09001 * 113.61695 * 25.34675 * 24 11 10 40 40 H 1.08996 * 113.61580 * 156.16953 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2946 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0066 6 6 3.6881 -0.6151 -0.0055 7 6 2.3071 -1.1092 0.0025 8 6 1.8702 -2.5156 0.0061 9 8 0.6840 -2.7839 0.0125 10 7 2.7850 -3.5054 0.0024 11 6 2.3505 -4.9044 0.0055 12 6 2.5289 -5.6079 -1.3503 13 6 3.9417 -5.9922 -0.8740 14 6 4.3545 -7.4138 -1.2606 15 7 4.9598 -7.4009 -2.5946 16 6 5.4093 -8.5673 -3.1539 17 1 5.3180 -9.4967 -2.6114 18 6 5.9824 -8.5551 -4.4181 19 7 6.0943 -7.4224 -5.0791 20 14 6.5950 -10.1463 -5.1813 21 1 6.3554 -11.2705 -4.2412 22 1 5.8674 -10.3985 -6.4510 23 1 8.0497 -10.0346 -5.4582 24 6 3.4047 -5.8757 0.5623 25 1 -0.3633 0.0024 1.0277 26 1 -0.3634 0.8887 -0.5158 27 1 -0.3633 -0.8912 -0.5118 28 1 4.4496 1.4061 -0.0122 29 1 4.5890 -1.2109 -0.0093 30 1 3.7311 -3.2914 -0.0030 31 1 1.3600 -5.0390 0.4402 32 1 1.8673 -6.4629 -1.4890 33 1 2.5243 -4.9255 -2.2002 34 1 4.7017 -5.2498 -1.1177 35 1 5.0773 -7.7916 -0.5374 36 1 3.4756 -8.0585 -1.2666 37 1 5.0423 -6.5662 -3.0818 38 1 6.4951 -7.4139 -5.9624 39 1 4.1061 -5.4092 1.2541 40 1 2.9829 -6.8034 0.9487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282000546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:53 Heat of formation + Delta-G solvation = 7.937739 kcal Electronic energy + Delta-G solvation = -20714.726393 eV Core-core repulsion = 17529.745009 eV Total energy + Delta-G solvation = -3184.981384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15750 -40.88561 -39.09791 -36.31195 -34.40281 -32.86547 -32.42436 -31.72412 -28.55855 -27.25294 -26.60614 -25.34742 -23.87637 -22.75601 -21.58420 -20.55482 -20.17512 -19.04245 -18.57429 -17.11105 -16.88734 -16.63943 -16.16298 -15.76092 -15.67658 -15.15480 -15.02975 -14.80858 -14.39561 -14.30450 -13.99914 -13.70091 -13.52289 -13.39844 -13.34667 -13.10066 -12.89562 -12.68800 -12.46337 -12.11364 -11.91764 -11.71428 -11.33468 -11.12151 -10.87361 -10.83526 -10.04656 -9.69854 -9.09411 -8.96785 -7.93940 -5.22401 0.76176 1.47432 1.48592 1.55985 1.58797 2.14240 2.55608 2.57029 2.58932 3.39015 3.61980 3.64256 3.93673 3.97116 3.98345 4.07946 4.30995 4.33195 4.35977 4.58947 4.68206 4.73373 4.79215 4.86966 4.93551 4.94657 4.98823 5.00849 5.08590 5.17916 5.28223 5.34428 5.42240 5.51333 5.74836 5.81375 6.00136 6.28875 6.63769 6.74702 7.34499 7.38365 8.12562 8.35146 9.30022 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.003079 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.727204 B = 9091.561809 C = 9564.684138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.098 3.902 3 N -0.538 5.538 4 H 0.433 0.567 5 C -0.003 4.003 6 C -0.190 4.190 7 C -0.273 4.273 8 C 0.585 3.415 9 O -0.590 6.590 10 N -0.699 5.699 11 C 0.128 3.872 12 C -0.143 4.143 13 C -0.110 4.110 14 C 0.161 3.839 15 N -0.746 5.746 16 C -0.244 4.244 17 H 0.076 0.924 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.974 3.026 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.292 1.292 24 C -0.115 4.115 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.207 0.793 29 H 0.155 0.845 30 H 0.409 0.591 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.023 0.977 36 H 0.021 0.979 37 H 0.372 0.628 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 19.691 15.085 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.021 4.021 3 N -0.135 5.135 4 H 0.273 0.727 5 C -0.130 4.130 6 C -0.214 4.214 7 C -0.283 4.283 8 C 0.376 3.624 9 O -0.472 6.472 10 N -0.349 5.349 11 C 0.022 3.978 12 C -0.182 4.182 13 C -0.129 4.129 14 C 0.034 3.966 15 N -0.388 5.388 16 C -0.376 4.376 17 H 0.093 0.907 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.803 3.197 21 H -0.190 1.190 22 H -0.221 1.221 23 H -0.219 1.219 24 C -0.154 4.154 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.223 0.777 29 H 0.172 0.828 30 H 0.245 0.755 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.204 0.796 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.206 19.441 15.127 25.964 hybrid contribution 0.829 -0.250 -1.143 1.434 sum -7.377 19.191 13.984 24.865 Atomic orbital electron populations 1.20535 0.86420 1.04209 1.03776 1.20517 0.94389 0.86123 1.01103 1.41609 1.05997 1.08705 1.57231 0.72658 1.22291 0.86452 0.96282 1.07996 1.22310 0.95215 0.95038 1.08817 1.20231 0.95130 0.91368 1.21566 1.17778 0.84938 0.85216 0.74425 1.90683 1.18055 1.85127 1.53373 1.45404 1.10062 1.04771 1.74687 1.21736 0.99182 0.80414 0.96488 1.23452 0.97368 1.00094 0.97279 1.22691 0.96327 0.96503 0.97343 1.20822 0.94840 0.95091 0.85800 1.42609 1.72424 1.07093 1.16713 1.19712 1.30539 0.88642 0.98706 0.90654 1.25593 1.03135 1.00195 0.98154 1.69830 1.51955 1.26487 1.13911 0.85056 0.77198 0.79397 0.78019 1.18981 1.22123 1.21885 1.23214 0.97292 0.99588 0.95269 0.89877 0.89070 0.90803 0.77670 0.82785 0.75452 0.88871 0.89608 0.93475 0.89877 0.95916 0.96143 0.79599 0.94057 0.89135 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.88 71.24 0.70 -0.89 16 2 C 0.10 1.94 7.17 41.78 0.30 2.24 16 3 N -0.54 -6.61 5.90 -182.73 -1.08 -7.69 16 4 H 0.43 2.02 8.96 -92.71 -0.83 1.19 16 5 C 0.00 -0.03 11.89 83.12 0.99 0.95 16 6 C -0.19 -3.57 10.56 23.62 0.25 -3.32 16 7 C -0.27 -6.70 6.29 -19.04 -0.12 -6.82 16 8 C 0.59 17.45 7.81 86.62 0.68 18.13 16 9 O -0.59 -21.00 14.43 -4.09 -0.06 -21.06 16 10 N -0.70 -18.42 5.26 -443.44 -2.33 -20.75 16 11 C 0.13 3.49 4.30 45.52 0.20 3.69 16 12 C -0.14 -4.64 7.45 31.18 0.23 -4.41 16 13 C -0.11 -3.53 3.64 -10.21 -0.04 -3.56 16 14 C 0.16 6.52 6.10 86.38 0.53 7.04 16 15 N -0.75 -39.22 5.60 -343.46 -1.92 -41.14 16 16 C -0.24 -14.03 9.99 84.03 0.84 -13.20 16 17 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 19 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 20 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 C -0.12 -2.77 7.38 31.12 0.23 -2.54 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.75 6.47 -2.39 -0.02 1.74 16 28 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 29 H 0.15 2.45 7.70 -2.91 -0.02 2.43 16 30 H 0.41 9.16 7.83 -92.71 -0.73 8.43 16 31 H 0.09 2.69 7.50 -2.39 -0.02 2.67 16 32 H 0.09 2.81 7.90 -2.39 -0.02 2.79 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.02 0.84 7.85 -2.39 -0.02 0.82 16 37 H 0.37 20.89 7.67 -92.71 -0.71 20.18 16 38 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.11 2.35 8.10 -2.39 -0.02 2.33 16 Total: -1.00 -76.58 336.12 0.97 -75.61 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -1.19 Total: 33.38 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 5.25 Total: -6.86 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -5.05 Total: -130.18 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.06 Total: -21.06 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -76.58 0.97 -75.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282000546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.543 kcal (2) G-P(sol) polarization free energy of solvation -76.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds