Wall clock time and date at job start Mon Mar 30 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39844 * 126.45780 * 2 1 4 4 C 1.35449 * 107.86591 * 180.26323 * 3 2 1 5 5 N 1.35536 * 108.87093 * 359.73694 * 4 3 2 6 6 H 0.97003 * 125.67728 * 179.97438 * 5 4 3 7 7 C 1.37647 * 108.64513 * 0.02562 * 5 4 3 8 8 C 1.46685 * 126.23676 * 180.02562 * 7 5 4 9 9 O 1.21685 * 119.99889 * 180.02562 * 8 7 5 10 10 N 1.34780 * 119.99491 * 0.02708 * 8 7 5 11 11 C 1.46497 * 119.99653 * 180.02562 * 10 8 7 12 12 C 1.53786 * 113.61643 * 105.85894 * 11 10 8 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 11 10 14 14 C 1.52994 * 113.66220 * 139.93548 * 13 12 11 15 15 N 1.46498 * 109.47402 * 87.44478 * 14 13 12 16 16 C 1.36937 * 120.00198 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99752 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00247 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47535 * 89.99455 * 20 18 16 22 22 H 1.48501 * 109.47316 * 209.99801 * 20 18 16 23 23 H 1.48501 * 109.47022 * 329.99657 * 20 18 16 24 24 C 1.53781 * 113.61305 * 203.46742 * 11 10 8 25 25 H 1.08994 * 109.47096 * 270.18817 * 1 2 3 26 26 H 1.08999 * 109.46977 * 30.18912 * 1 2 3 27 27 H 1.09002 * 109.46698 * 150.18459 * 1 2 3 28 28 H 1.08006 * 126.06518 * 359.97438 * 3 2 1 29 29 H 1.07992 * 125.56500 * 179.75929 * 4 3 2 30 30 H 0.96995 * 120.00200 * 359.97438 * 10 8 7 31 31 H 1.09002 * 112.84935 * 334.66222 * 11 10 8 32 32 H 1.08993 * 113.61491 * 203.74894 * 12 11 10 33 33 H 1.09000 * 113.61138 * 334.65232 * 12 11 10 34 34 H 1.09002 * 113.61454 * 270.79954 * 13 12 11 35 35 H 1.09005 * 109.46709 * 207.43538 * 14 13 12 36 36 H 1.08998 * 109.47556 * 327.43829 * 14 13 12 37 37 H 0.97001 * 120.00130 * 359.97438 * 15 14 13 38 38 H 0.97001 * 119.99757 * 180.02562 * 19 18 16 39 39 H 1.09001 * 113.61695 * 25.34675 * 24 11 10 40 40 H 1.08996 * 113.61580 * 156.16953 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6218 0.6929 -0.0059 5 7 3.6284 -0.6624 -0.0038 6 1 4.4191 -1.2243 -0.0073 7 6 2.3264 -1.1088 0.0031 8 6 1.8899 -2.5092 0.0080 9 8 0.7027 -2.7765 0.0134 10 7 2.8038 -3.4999 0.0064 11 6 2.3679 -4.8985 0.0106 12 6 2.5471 -5.6038 -1.3442 13 6 3.9590 -5.9888 -0.8660 14 6 4.3708 -7.4113 -1.2505 15 7 4.9775 -7.4005 -2.5839 16 6 5.4265 -8.5679 -3.1413 17 1 5.3337 -9.4966 -2.5978 18 6 6.0009 -8.5577 -4.4050 19 7 6.4329 -9.6798 -4.9406 20 14 6.1621 -6.9515 -5.3448 21 1 7.4642 -6.3161 -5.0196 22 1 6.0940 -7.2223 -6.8034 23 1 5.0560 -6.0389 -4.9587 24 6 3.4207 -5.8701 0.5696 25 1 -0.3633 0.0034 1.0276 26 1 -0.3633 0.8883 -0.5168 27 1 -0.3633 -0.8917 -0.5110 28 1 2.0136 2.1550 -0.0004 29 1 4.4972 1.3253 -0.0111 30 1 3.7500 -3.2868 0.0016 31 1 1.3768 -5.0316 0.4445 32 1 1.8847 -6.4583 -1.4825 33 1 2.5439 -4.9223 -2.1949 34 1 4.7199 -5.2474 -1.1098 35 1 5.0925 -7.7888 -0.5261 36 1 3.4913 -8.0551 -1.2567 37 1 5.0612 -6.5664 -3.0720 38 1 6.8346 -9.6726 -5.8234 39 1 4.1218 -5.4034 1.2616 40 1 2.9975 -6.7970 0.9567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282002972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:31 Heat of formation + Delta-G solvation = 37.696722 kcal Electronic energy + Delta-G solvation = -20860.832542 eV Core-core repulsion = 17677.141604 eV Total energy + Delta-G solvation = -3183.690938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.62104 -39.97299 -38.17793 -34.79451 -33.52674 -32.54466 -31.22404 -29.92403 -27.53634 -26.80990 -25.65603 -23.63003 -22.47211 -21.43862 -21.02599 -19.54992 -19.13168 -18.86567 -17.56627 -16.18882 -15.87019 -15.48842 -14.90273 -14.50215 -14.39044 -14.09130 -13.96558 -13.86627 -13.39053 -13.21458 -12.84781 -12.66685 -12.53933 -12.44898 -12.35013 -11.86673 -11.77470 -11.45601 -10.93005 -10.69681 -10.30279 -10.21026 -10.10106 -9.94692 -9.60129 -9.20604 -9.06307 -8.89772 -8.42002 -7.23794 -5.78479 -3.13583 1.21778 2.45864 2.78262 2.92616 3.18141 3.34556 3.37176 3.42844 4.49849 4.56935 4.61362 4.65760 4.71915 4.92541 4.95716 4.96210 5.05420 5.51795 5.52269 5.57683 5.62236 5.67003 5.69893 5.76235 5.81318 5.89790 5.91452 6.04963 6.06955 6.16655 6.22099 6.41483 6.52848 6.65093 6.68830 6.78258 7.05556 7.32213 7.98257 8.00924 8.40972 9.20213 9.92705 10.12759 11.40165 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.003548 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.839729 B = 7890.117998 C = 8527.516190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.073 4.073 3 C -0.213 4.213 4 C 0.026 3.974 5 N -0.541 5.541 6 H 0.416 0.584 7 C -0.061 4.061 8 C 0.591 3.409 9 O -0.526 6.526 10 N -0.712 5.712 11 C 0.118 3.882 12 C -0.141 4.141 13 C -0.119 4.119 14 C 0.167 3.833 15 N -0.756 5.756 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.278 1.278 24 C -0.135 4.135 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.171 0.829 30 H 0.393 0.607 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.027 0.973 36 H 0.029 0.971 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.069 0.931 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.969 21.617 13.605 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.238 4.238 4 C -0.110 4.110 5 N -0.137 5.137 6 H 0.254 0.746 7 C -0.173 4.173 8 C 0.379 3.621 9 O -0.402 6.402 10 N -0.362 5.362 11 C 0.013 3.987 12 C -0.179 4.179 13 C -0.138 4.138 14 C 0.040 3.960 15 N -0.401 5.401 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.715 3.285 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.174 4.174 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.161 0.839 29 H 0.188 0.812 30 H 0.227 0.773 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.192 0.808 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.685 21.011 13.584 26.173 hybrid contribution 1.335 0.989 -0.905 1.891 sum -6.351 22.000 12.680 26.174 Atomic orbital electron populations 1.20353 0.89264 1.02984 1.02195 1.19981 0.95949 0.90763 1.01518 1.20820 0.91837 0.98837 1.12289 1.22022 0.99622 0.82939 1.06393 1.41970 1.07189 1.07353 1.57233 0.74645 1.20250 0.83770 0.93549 1.19776 1.17035 0.85910 0.82942 0.76237 1.90809 1.15956 1.83195 1.50218 1.45584 1.09042 1.05951 1.75642 1.21953 0.99281 0.79230 0.98275 1.23486 0.97440 1.00448 0.96574 1.22850 0.96508 0.99307 0.95129 1.20614 0.95796 0.92222 0.87394 1.42704 1.73920 1.07206 1.16278 1.19084 1.31636 0.87345 0.99306 0.89231 1.24679 1.00894 0.96443 0.97239 1.69704 1.46382 1.24899 1.17321 0.86534 0.77743 0.84389 0.79790 1.21176 1.21681 1.20405 1.23295 0.97739 0.99438 0.96920 0.91536 0.92006 0.90078 0.83945 0.81164 0.77310 0.87903 0.88682 0.91480 0.89799 0.95511 0.95298 0.80775 0.93059 0.91244 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.83 36.01 0.35 -0.59 16 2 C -0.07 -0.81 6.21 -104.16 -0.65 -1.46 16 3 C -0.21 -1.88 10.76 -39.98 -0.43 -2.31 16 4 C 0.03 0.19 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -4.24 5.99 -9.39 -0.06 -4.30 16 6 H 0.42 2.12 8.19 -40.82 -0.33 1.79 16 7 C -0.06 -0.68 7.06 -81.98 -0.58 -1.26 16 8 C 0.59 7.58 7.79 -12.85 -0.10 7.48 16 9 O -0.53 -8.34 14.42 5.20 0.08 -8.27 16 10 N -0.71 -7.67 5.26 -54.32 -0.29 -7.96 16 11 C 0.12 1.39 4.30 -67.12 -0.29 1.10 16 12 C -0.14 -1.95 7.45 -25.82 -0.19 -2.14 16 13 C -0.12 -1.68 3.64 -89.71 -0.33 -2.00 16 14 C 0.17 3.12 6.10 -4.05 -0.02 3.09 16 15 N -0.76 -17.92 5.41 -59.91 -0.32 -18.24 16 16 C -0.24 -6.96 10.47 -15.06 -0.16 -7.11 16 17 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 18 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 19 N -0.93 -29.59 13.97 55.49 0.78 -28.82 16 20 Si 0.88 22.22 27.74 -169.99 -4.71 17.50 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 23 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 24 C -0.14 -1.48 7.38 -25.92 -0.19 -1.67 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.08 1.00 6.49 -51.93 -0.34 0.66 16 28 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 30 H 0.39 3.27 7.84 -40.82 -0.32 2.95 16 31 H 0.10 1.29 7.50 -51.93 -0.39 0.90 16 32 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.03 0.55 7.85 -51.93 -0.41 0.15 16 37 H 0.36 8.33 5.53 -40.82 -0.23 8.11 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -35.03 332.62 -8.22 -43.25 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.82 Total: 8.72 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.88 Total: -6.91 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.11 Total: -59.31 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.08 Total: -8.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.03 -8.22 -43.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282002972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.943 kcal (2) G-P(sol) polarization free energy of solvation -35.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds