Wall clock time and date at job start Mon Mar 30 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39844 * 126.45780 * 2 1 4 4 C 1.35449 * 107.86591 * 180.26323 * 3 2 1 5 5 N 1.35536 * 108.87093 * 359.73694 * 4 3 2 6 6 H 0.97003 * 125.67728 * 179.97438 * 5 4 3 7 7 C 1.37647 * 108.64513 * 0.02562 * 5 4 3 8 8 C 1.46685 * 126.23676 * 180.02562 * 7 5 4 9 9 O 1.21685 * 119.99889 * 180.02562 * 8 7 5 10 10 N 1.34780 * 119.99491 * 0.02708 * 8 7 5 11 11 C 1.46497 * 119.99653 * 180.02562 * 10 8 7 12 12 C 1.53786 * 113.61643 * 105.85894 * 11 10 8 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 11 10 14 14 C 1.52994 * 113.66220 * 139.93548 * 13 12 11 15 15 N 1.46498 * 109.47402 * 87.44478 * 14 13 12 16 16 C 1.36937 * 120.00198 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99752 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00247 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47535 * 89.99455 * 20 18 16 22 22 H 1.48501 * 109.47316 * 209.99801 * 20 18 16 23 23 H 1.48501 * 109.47022 * 329.99657 * 20 18 16 24 24 C 1.53781 * 113.61305 * 203.46742 * 11 10 8 25 25 H 1.08994 * 109.47096 * 270.18817 * 1 2 3 26 26 H 1.08999 * 109.46977 * 30.18912 * 1 2 3 27 27 H 1.09002 * 109.46698 * 150.18459 * 1 2 3 28 28 H 1.08006 * 126.06518 * 359.97438 * 3 2 1 29 29 H 1.07992 * 125.56500 * 179.75929 * 4 3 2 30 30 H 0.96995 * 120.00200 * 359.97438 * 10 8 7 31 31 H 1.09002 * 112.84935 * 334.66222 * 11 10 8 32 32 H 1.08993 * 113.61491 * 203.74894 * 12 11 10 33 33 H 1.09000 * 113.61138 * 334.65232 * 12 11 10 34 34 H 1.09002 * 113.61454 * 270.79954 * 13 12 11 35 35 H 1.09005 * 109.46709 * 207.43538 * 14 13 12 36 36 H 1.08998 * 109.47556 * 327.43829 * 14 13 12 37 37 H 0.97001 * 120.00130 * 359.97438 * 15 14 13 38 38 H 0.97001 * 119.99757 * 180.02562 * 19 18 16 39 39 H 1.09001 * 113.61695 * 25.34675 * 24 11 10 40 40 H 1.08996 * 113.61580 * 156.16953 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6218 0.6929 -0.0059 5 7 3.6284 -0.6624 -0.0038 6 1 4.4191 -1.2243 -0.0073 7 6 2.3264 -1.1088 0.0031 8 6 1.8899 -2.5092 0.0080 9 8 0.7027 -2.7765 0.0134 10 7 2.8038 -3.4999 0.0064 11 6 2.3679 -4.8985 0.0106 12 6 2.5471 -5.6038 -1.3442 13 6 3.9590 -5.9888 -0.8660 14 6 4.3708 -7.4113 -1.2505 15 7 4.9775 -7.4005 -2.5839 16 6 5.4265 -8.5679 -3.1413 17 1 5.3337 -9.4966 -2.5978 18 6 6.0009 -8.5577 -4.4050 19 7 6.4329 -9.6798 -4.9406 20 14 6.1621 -6.9515 -5.3448 21 1 7.4642 -6.3161 -5.0196 22 1 6.0940 -7.2223 -6.8034 23 1 5.0560 -6.0389 -4.9587 24 6 3.4207 -5.8701 0.5696 25 1 -0.3633 0.0034 1.0276 26 1 -0.3633 0.8883 -0.5168 27 1 -0.3633 -0.8917 -0.5110 28 1 2.0136 2.1550 -0.0004 29 1 4.4972 1.3253 -0.0111 30 1 3.7500 -3.2868 0.0016 31 1 1.3768 -5.0316 0.4445 32 1 1.8847 -6.4583 -1.4825 33 1 2.5439 -4.9223 -2.1949 34 1 4.7199 -5.2474 -1.1098 35 1 5.0925 -7.7888 -0.5261 36 1 3.4913 -8.0551 -1.2567 37 1 5.0612 -6.5664 -3.0720 38 1 6.8346 -9.6726 -5.8234 39 1 4.1218 -5.4034 1.2616 40 1 2.9975 -6.7970 0.9567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282002972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:30 Heat of formation + Delta-G solvation = 12.551896 kcal Electronic energy + Delta-G solvation = -20861.922904 eV Core-core repulsion = 17677.141604 eV Total energy + Delta-G solvation = -3184.781299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32832 -40.94299 -39.23155 -36.52596 -34.68799 -33.46702 -33.10796 -30.67708 -28.90810 -27.78177 -26.67872 -25.10023 -23.64976 -22.88554 -21.72027 -20.61554 -20.10096 -19.59857 -19.46500 -17.16796 -16.73306 -16.63887 -16.36523 -16.03250 -15.64555 -15.20627 -14.93311 -14.81201 -14.60452 -14.39586 -14.08401 -13.76037 -13.59989 -13.52871 -13.39379 -13.18213 -13.02502 -12.75183 -12.55357 -12.20612 -11.90062 -11.75288 -11.46147 -11.23066 -11.07141 -10.91782 -10.17950 -9.70552 -9.30017 -9.12628 -8.05099 -5.38148 0.43891 1.34350 1.38647 1.46143 1.82355 2.00274 2.25055 2.30493 2.46021 3.25618 3.44102 3.52871 3.82510 3.85084 3.91986 4.07737 4.24127 4.26042 4.38347 4.49425 4.69142 4.81957 4.82797 4.86201 4.87091 4.89231 4.95400 4.99946 5.09038 5.16710 5.21602 5.29271 5.44586 5.60264 5.74374 5.77050 5.97400 6.19530 6.43858 6.60985 7.06427 7.11531 7.83582 8.02243 9.16787 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.003548 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.839729 B = 7890.117998 C = 8527.516190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.095 4.095 3 C -0.232 4.232 4 C 0.049 3.951 5 N -0.531 5.531 6 H 0.430 0.570 7 C -0.090 4.090 8 C 0.587 3.413 9 O -0.567 6.567 10 N -0.701 5.701 11 C 0.126 3.874 12 C -0.146 4.146 13 C -0.114 4.114 14 C 0.162 3.838 15 N -0.758 5.758 16 C -0.236 4.236 17 H 0.055 0.945 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.958 3.042 21 H -0.274 1.274 22 H -0.297 1.297 23 H -0.255 1.255 24 C -0.115 4.115 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.160 0.840 29 H 0.213 0.787 30 H 0.408 0.592 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.028 0.972 36 H 0.023 0.977 37 H 0.365 0.635 38 H 0.258 0.742 39 H 0.094 0.906 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 24.803 14.522 29.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.255 4.255 4 C -0.088 4.088 5 N -0.128 5.128 6 H 0.270 0.730 7 C -0.203 4.203 8 C 0.377 3.623 9 O -0.446 6.446 10 N -0.351 5.351 11 C 0.020 3.980 12 C -0.185 4.185 13 C -0.132 4.132 14 C 0.036 3.964 15 N -0.404 5.404 16 C -0.367 4.367 17 H 0.073 0.927 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.785 3.215 21 H -0.199 1.199 22 H -0.223 1.223 23 H -0.180 1.180 24 C -0.154 4.154 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.177 0.823 29 H 0.229 0.771 30 H 0.244 0.756 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.198 0.802 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.591 24.211 14.551 29.006 hybrid contribution 0.987 -0.032 -1.124 1.496 sum -5.604 24.179 13.428 28.219 Atomic orbital electron populations 1.20305 0.89726 1.02481 1.02096 1.20296 0.96275 0.91971 1.01844 1.21120 0.92291 0.99110 1.13025 1.22703 1.00427 0.82704 1.02977 1.41972 1.06512 1.07952 1.56338 0.73050 1.20031 0.85374 0.92602 1.22270 1.17336 0.85548 0.83928 0.75522 1.90784 1.17656 1.83920 1.52276 1.45448 1.09615 1.05169 1.74913 1.21783 0.99473 0.79858 0.96860 1.23503 0.97349 1.00320 0.97304 1.22794 0.96600 0.96328 0.97528 1.20815 0.95095 0.95448 0.85026 1.42731 1.73925 1.05728 1.17995 1.19082 1.30626 0.87904 0.99118 0.92670 1.25550 1.01297 1.00398 0.98539 1.69894 1.48154 1.27729 1.17837 0.85358 0.78750 0.79921 0.77434 1.19939 1.22345 1.17981 1.23215 0.97245 0.99576 0.95331 0.91489 0.90378 0.92590 0.82265 0.77074 0.75637 0.88705 0.89440 0.92700 0.88683 0.95416 0.95902 0.80187 0.93307 0.88763 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 9.83 71.24 0.70 -1.17 16 2 C -0.09 -2.00 6.21 -19.56 -0.12 -2.12 16 3 C -0.23 -3.47 10.76 22.01 0.24 -3.23 16 4 C 0.05 0.51 11.89 83.48 0.99 1.50 16 5 N -0.53 -6.66 5.99 -183.62 -1.10 -7.76 16 6 H 0.43 2.80 8.19 -92.71 -0.76 2.04 16 7 C -0.09 -1.89 7.06 40.35 0.28 -1.61 16 8 C 0.59 14.66 7.79 86.45 0.67 15.33 16 9 O -0.57 -18.37 14.42 -4.30 -0.06 -18.43 16 10 N -0.70 -13.79 5.26 -443.99 -2.34 -16.13 16 11 C 0.13 2.76 4.30 45.52 0.20 2.96 16 12 C -0.15 -3.87 7.45 31.18 0.23 -3.64 16 13 C -0.11 -2.94 3.64 -10.21 -0.04 -2.98 16 14 C 0.16 5.87 6.10 86.38 0.53 6.40 16 15 N -0.76 -35.19 5.41 -343.46 -1.86 -37.05 16 16 C -0.24 -13.62 10.47 84.03 0.88 -12.74 16 17 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 19 N -0.99 -63.77 13.97 21.65 0.30 -63.47 16 20 Si 0.96 45.55 27.74 68.60 1.90 47.46 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.26 -11.02 6.52 99.48 0.65 -10.37 16 24 C -0.12 -2.19 7.38 31.12 0.23 -1.96 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.45 6.49 -2.39 -0.02 1.43 16 28 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.21 0.37 8.06 -2.91 -0.02 0.34 16 30 H 0.41 5.57 7.84 -92.71 -0.73 4.84 16 31 H 0.09 2.31 7.50 -2.39 -0.02 2.29 16 32 H 0.09 2.44 7.90 -2.39 -0.02 2.42 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.02 0.87 7.85 -2.39 -0.02 0.85 16 37 H 0.37 16.09 5.53 -92.71 -0.51 15.58 16 38 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.93 8.10 -2.39 -0.02 1.91 16 Total: -1.00 -78.23 332.62 1.13 -77.11 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.98 Total: 25.01 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.26 Total: -6.74 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -4.99 Total: -124.40 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.06 Total: -18.43 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.46 kcal Total: -78.23 1.13 -77.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282002972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.658 kcal (2) G-P(sol) polarization free energy of solvation -78.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds