Wall clock time and date at job start Mon Mar 30 2020 02:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 126.82796 * 2 1 4 4 N 1.36451 * 108.85654 * 179.97438 * 3 2 1 5 5 H 0.97001 * 124.85368 * 180.02562 * 4 3 2 6 6 C 1.34657 * 110.29593 * 0.02562 * 4 3 2 7 7 C 1.36772 * 108.40053 * 359.97438 * 6 4 3 8 8 C 1.47253 * 126.94790 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00215 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99912 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00060 * 179.97438 * 10 8 7 12 12 H 1.08997 * 112.85255 * 336.20222 * 11 10 8 13 13 C 1.53783 * 113.61062 * 107.50666 * 11 10 8 14 14 C 1.53784 * 87.08057 * 89.11813 * 13 11 10 15 15 H 1.08997 * 113.68794 * 270.87096 * 14 13 11 16 16 C 1.52999 * 113.61328 * 139.98302 * 14 13 11 17 17 N 1.46494 * 109.47402 * 87.50053 * 16 14 13 18 18 C 1.36937 * 119.99923 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00266 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99881 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00246 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99939 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46838 * 60.00507 * 22 20 18 24 24 H 1.48505 * 109.47093 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47357 * 300.00228 * 22 20 18 26 26 C 1.53782 * 87.08273 * 25.42929 * 14 13 11 27 27 H 1.08996 * 109.47118 * 90.02731 * 1 2 3 28 28 H 1.09008 * 109.46873 * 210.02308 * 1 2 3 29 29 H 1.09002 * 109.47621 * 330.02106 * 1 2 3 30 30 H 1.08004 * 125.57593 * 359.71287 * 3 2 1 31 31 H 1.08006 * 125.80448 * 179.97438 * 6 4 3 32 32 H 0.97001 * 120.00482 * 0.02562 * 10 8 7 33 33 H 1.08997 * 113.61153 * 203.66441 * 13 11 10 34 34 H 1.08995 * 113.61607 * 334.56564 * 13 11 10 35 35 H 1.09003 * 109.46814 * 207.50368 * 16 14 13 36 36 H 1.09002 * 109.47178 * 327.49594 * 16 14 13 37 37 H 0.96998 * 120.00071 * 359.97438 * 17 16 14 38 38 H 0.96999 * 120.00331 * 179.97438 * 21 20 18 39 39 H 1.08997 * 113.61330 * 220.01814 * 26 14 13 40 40 H 1.08996 * 113.68580 * 89.12715 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6111 0.6555 0.0006 5 1 4.3840 1.2416 0.0011 6 6 3.6657 -0.6900 0.0004 7 6 2.3865 -1.1740 0.0003 8 6 1.9751 -2.5879 -0.0005 9 8 0.7938 -2.8776 -0.0010 10 7 2.9075 -3.5610 -0.0006 11 6 2.4983 -4.9677 -0.0008 12 1 1.4976 -5.1175 0.4045 13 6 2.7332 -5.6774 -1.3447 14 6 4.1363 -6.0304 -0.8234 15 1 4.8896 -5.2752 -1.0476 16 6 4.5874 -7.4462 -1.1882 17 7 5.2339 -7.4293 -2.5026 18 6 5.7223 -8.5901 -3.0403 19 1 5.6305 -9.5181 -2.4957 20 6 6.3345 -8.5741 -4.2861 21 7 6.4460 -7.4433 -4.9502 22 14 7.0014 -10.1575 -5.0194 23 1 5.8946 -11.1350 -5.1761 24 1 7.6031 -9.8732 -6.3470 25 1 8.0372 -10.7228 -4.1178 26 6 3.5524 -5.9160 0.5947 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8899 0.5142 29 1 -0.3634 0.8902 0.5135 30 1 1.9866 2.1060 -0.0044 31 1 4.5665 -1.2858 0.0004 32 1 3.8497 -3.3301 0.0002 33 1 2.0929 -6.5461 -1.4975 34 1 2.7424 -5.0014 -2.1997 35 1 5.2938 -7.8064 -0.4403 36 1 3.7211 -8.1072 -1.2178 37 1 5.3161 -6.5958 -2.9920 38 1 6.8741 -7.4321 -5.8205 39 1 4.2229 -5.4327 1.3052 40 1 3.1358 -6.8493 0.9733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283102637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:51 Heat of formation + Delta-G solvation = 33.765722 kcal Electronic energy + Delta-G solvation = -20680.519330 eV Core-core repulsion = 17496.657931 eV Total energy + Delta-G solvation = -3183.861399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36807 -39.76703 -37.90108 -34.46808 -33.09336 -32.57147 -30.92970 -29.77782 -26.73979 -26.67688 -25.41421 -23.81714 -22.79244 -21.36634 -20.30013 -19.37582 -18.87466 -18.46976 -17.02119 -16.36248 -15.68278 -15.10185 -14.77016 -14.36723 -14.27107 -14.05192 -13.82160 -13.57356 -13.26099 -13.17023 -12.78268 -12.69307 -12.48505 -12.25462 -12.04655 -11.56297 -11.51615 -10.99319 -10.78962 -10.41772 -10.29656 -10.05106 -9.78330 -9.74745 -9.55095 -8.96986 -8.82100 -8.67411 -8.48168 -6.86684 -5.72771 -3.00711 1.62435 2.22521 2.96628 3.31333 3.46331 3.50379 3.51594 3.57386 4.61428 4.62549 4.77517 4.83698 4.90301 4.92425 5.20430 5.21478 5.24201 5.40915 5.61540 5.63034 5.76810 5.83231 5.92582 5.99885 6.01615 6.09123 6.14041 6.18647 6.34649 6.41286 6.50276 6.61792 6.69820 6.75634 6.84582 7.00625 7.19358 7.68107 7.72899 8.42793 8.46653 9.57415 10.17257 10.51719 11.50236 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.003059 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.531329 B = 9150.879099 C = 9630.207457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.109 4.109 3 C -0.029 4.029 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.048 3.952 7 C -0.227 4.227 8 C 0.591 3.409 9 O -0.545 6.545 10 N -0.710 5.710 11 C 0.119 3.881 12 H 0.099 0.901 13 C -0.139 4.139 14 C -0.113 4.113 15 H 0.086 0.914 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.138 4.138 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.397 0.603 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.017 0.983 36 H 0.020 0.980 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.067 0.933 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 18.103 13.436 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.157 4.157 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.088 4.088 7 C -0.237 4.237 8 C 0.379 3.621 9 O -0.423 6.423 10 N -0.360 5.360 11 C 0.014 3.986 12 H 0.117 0.883 13 C -0.178 4.178 14 C -0.132 4.132 15 H 0.104 0.896 16 C 0.035 3.965 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.177 4.177 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.185 0.815 31 H 0.190 0.810 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.219 17.821 13.410 23.442 hybrid contribution 1.494 -0.223 -0.763 1.692 sum -5.725 17.598 12.647 22.414 Atomic orbital electron populations 1.20195 0.89334 1.02489 1.02043 1.20569 0.95667 0.90349 1.04969 1.21573 0.82450 0.99201 1.12428 1.41486 1.08326 1.06698 1.57866 0.74618 1.21968 0.98625 0.83909 1.04333 1.20403 0.92696 0.92875 1.17752 1.17382 0.85402 0.83936 0.75349 1.90732 1.17242 1.83710 1.50584 1.45524 1.09302 1.05488 1.75670 1.21889 0.99116 0.79614 0.98029 0.88309 1.23413 0.97251 1.00337 0.96767 1.22749 0.96432 0.99308 0.94699 0.89554 1.20641 0.94922 0.92402 0.88559 1.42346 1.69554 1.08733 1.16955 1.19209 1.29966 0.87950 0.99830 0.91301 1.24735 1.01940 0.96943 0.97506 1.69649 1.49495 1.24556 1.14685 0.86268 0.78750 0.82910 0.78273 1.21284 1.21722 1.21326 1.23315 0.97784 0.99466 0.97140 0.91783 0.90286 0.92489 0.81469 0.81039 0.76900 0.89214 0.91343 0.96475 0.96213 0.78344 0.93542 0.91389 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.98 36.01 0.36 -0.53 16 2 C -0.11 -1.23 6.35 -102.54 -0.65 -1.88 16 3 C -0.03 -0.24 11.82 -16.82 -0.20 -0.44 16 4 N -0.55 -3.68 5.90 -12.84 -0.08 -3.75 16 5 H 0.42 1.33 8.96 -40.82 -0.37 0.96 16 6 C 0.05 0.41 11.40 -16.84 -0.19 0.22 16 7 C -0.23 -2.74 6.29 -103.35 -0.65 -3.39 16 8 C 0.59 8.53 7.81 -12.60 -0.10 8.43 16 9 O -0.54 -9.67 14.92 5.25 0.08 -9.60 16 10 N -0.71 -8.85 5.25 -54.14 -0.28 -9.14 16 11 C 0.12 1.60 4.32 -67.11 -0.29 1.31 16 12 H 0.10 1.42 7.46 -51.93 -0.39 1.03 16 13 C -0.14 -2.17 7.43 -25.92 -0.19 -2.36 16 14 C -0.11 -1.79 3.63 -89.81 -0.33 -2.12 16 15 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 16 C 0.16 3.28 6.10 -4.05 -0.02 3.26 16 17 N -0.73 -18.85 5.60 -59.91 -0.34 -19.19 16 18 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 22 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C -0.14 -1.73 7.39 -25.92 -0.19 -1.93 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.01 6.86 -51.92 -0.36 0.65 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.17 0.98 7.45 -52.48 -0.39 0.59 16 32 H 0.40 3.99 7.64 -40.82 -0.31 3.68 16 33 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 37 H 0.38 10.36 7.67 -40.82 -0.31 10.04 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -35.51 336.55 -8.42 -43.93 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.87 Total: 9.86 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.70 Total: -6.93 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.03 Total: -60.01 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.51 -8.42 -43.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283102637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.691 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds