Wall clock time and date at job start Mon Mar 30 2020 02:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 126.82796 * 2 1 4 4 N 1.36451 * 108.85654 * 179.97438 * 3 2 1 5 5 H 0.97001 * 124.85368 * 180.02562 * 4 3 2 6 6 C 1.34657 * 110.29593 * 0.02562 * 4 3 2 7 7 C 1.36772 * 108.40053 * 359.97438 * 6 4 3 8 8 C 1.47253 * 126.94790 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00215 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99912 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00060 * 179.97438 * 10 8 7 12 12 H 1.08997 * 112.85255 * 336.20222 * 11 10 8 13 13 C 1.53783 * 113.61062 * 107.50666 * 11 10 8 14 14 C 1.53784 * 87.08057 * 89.11813 * 13 11 10 15 15 H 1.08997 * 113.68794 * 270.87096 * 14 13 11 16 16 C 1.52999 * 113.61328 * 139.98302 * 14 13 11 17 17 N 1.46494 * 109.47402 * 87.50053 * 16 14 13 18 18 C 1.36937 * 119.99923 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00266 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99881 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00246 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99939 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46838 * 60.00507 * 22 20 18 24 24 H 1.48505 * 109.47093 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47357 * 300.00228 * 22 20 18 26 26 C 1.53782 * 87.08273 * 25.42929 * 14 13 11 27 27 H 1.08996 * 109.47118 * 90.02731 * 1 2 3 28 28 H 1.09008 * 109.46873 * 210.02308 * 1 2 3 29 29 H 1.09002 * 109.47621 * 330.02106 * 1 2 3 30 30 H 1.08004 * 125.57593 * 359.71287 * 3 2 1 31 31 H 1.08006 * 125.80448 * 179.97438 * 6 4 3 32 32 H 0.97001 * 120.00482 * 0.02562 * 10 8 7 33 33 H 1.08997 * 113.61153 * 203.66441 * 13 11 10 34 34 H 1.08995 * 113.61607 * 334.56564 * 13 11 10 35 35 H 1.09003 * 109.46814 * 207.50368 * 16 14 13 36 36 H 1.09002 * 109.47178 * 327.49594 * 16 14 13 37 37 H 0.96998 * 120.00071 * 359.97438 * 17 16 14 38 38 H 0.96999 * 120.00331 * 179.97438 * 21 20 18 39 39 H 1.08997 * 113.61330 * 220.01814 * 26 14 13 40 40 H 1.08996 * 113.68580 * 89.12715 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6111 0.6555 0.0006 5 1 4.3840 1.2416 0.0011 6 6 3.6657 -0.6900 0.0004 7 6 2.3865 -1.1740 0.0003 8 6 1.9751 -2.5879 -0.0005 9 8 0.7938 -2.8776 -0.0010 10 7 2.9075 -3.5610 -0.0006 11 6 2.4983 -4.9677 -0.0008 12 1 1.4976 -5.1175 0.4045 13 6 2.7332 -5.6774 -1.3447 14 6 4.1363 -6.0304 -0.8234 15 1 4.8896 -5.2752 -1.0476 16 6 4.5874 -7.4462 -1.1882 17 7 5.2339 -7.4293 -2.5026 18 6 5.7223 -8.5901 -3.0403 19 1 5.6305 -9.5181 -2.4957 20 6 6.3345 -8.5741 -4.2861 21 7 6.4460 -7.4433 -4.9502 22 14 7.0014 -10.1575 -5.0194 23 1 5.8946 -11.1350 -5.1761 24 1 7.6031 -9.8732 -6.3470 25 1 8.0372 -10.7228 -4.1178 26 6 3.5524 -5.9160 0.5947 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8899 0.5142 29 1 -0.3634 0.8902 0.5135 30 1 1.9866 2.1060 -0.0044 31 1 4.5665 -1.2858 0.0004 32 1 3.8497 -3.3301 0.0002 33 1 2.0929 -6.5461 -1.4975 34 1 2.7424 -5.0014 -2.1997 35 1 5.2938 -7.8064 -0.4403 36 1 3.7211 -8.1072 -1.2178 37 1 5.3161 -6.5958 -2.9920 38 1 6.8741 -7.4321 -5.8205 39 1 4.2229 -5.4327 1.3052 40 1 3.1358 -6.8493 0.9733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283102637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:51 Heat of formation + Delta-G solvation = 8.480906 kcal Electronic energy + Delta-G solvation = -20681.615762 eV Core-core repulsion = 17496.657931 eV Total energy + Delta-G solvation = -3184.957831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08838 -40.88532 -39.09452 -36.31019 -34.41583 -33.31339 -32.82625 -30.67486 -28.38856 -27.42360 -26.59994 -25.40120 -24.09655 -22.82594 -21.12513 -20.39223 -19.96672 -19.13990 -19.02623 -17.39088 -16.82711 -16.61276 -16.08934 -15.66106 -15.64077 -15.13566 -14.93788 -14.87610 -14.46129 -14.31044 -14.09490 -13.60665 -13.55874 -13.35697 -13.24555 -13.09510 -12.87306 -12.64949 -12.30235 -12.22017 -11.91026 -11.71604 -11.32674 -11.11528 -10.88122 -10.82466 -10.03524 -9.50820 -9.15939 -8.96764 -7.94025 -5.22265 0.80239 1.47204 1.50554 1.51905 1.56561 2.23550 2.50218 2.56867 2.59120 3.38732 3.62272 3.64533 3.96773 3.99265 4.01698 4.08560 4.31820 4.35386 4.46981 4.59791 4.70651 4.81693 4.87276 4.91315 4.93112 4.95160 4.96409 5.01643 5.16715 5.19186 5.29906 5.36124 5.42135 5.50794 5.74649 5.85200 5.98673 6.28720 6.67235 6.75174 7.34588 7.39961 8.12868 8.35438 9.29458 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.003059 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.531329 B = 9150.879099 C = 9630.207457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.152 4.152 3 C -0.010 4.010 4 N -0.533 5.533 5 H 0.438 0.562 6 C 0.068 3.932 7 C -0.272 4.272 8 C 0.584 3.416 9 O -0.591 6.591 10 N -0.700 5.700 11 C 0.127 3.873 12 H 0.090 0.910 13 C -0.144 4.144 14 C -0.109 4.109 15 H 0.088 0.912 16 C 0.160 3.840 17 N -0.745 5.745 18 C -0.247 4.247 19 H 0.075 0.925 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.974 3.026 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.276 1.276 26 C -0.115 4.115 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.202 0.798 31 H 0.202 0.798 32 H 0.410 0.590 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.093 0.907 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.058 19.056 14.711 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.158 4.158 3 C -0.138 4.138 4 N -0.128 5.128 5 H 0.278 0.722 6 C -0.071 4.071 7 C -0.283 4.283 8 C 0.375 3.625 9 O -0.473 6.473 10 N -0.351 5.351 11 C 0.021 3.979 12 H 0.108 0.892 13 C -0.183 4.183 14 C -0.127 4.127 15 H 0.106 0.894 16 C 0.034 3.966 17 N -0.388 5.388 18 C -0.379 4.379 19 H 0.093 0.907 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.202 1.202 26 C -0.153 4.153 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.218 0.782 31 H 0.219 0.781 32 H 0.247 0.753 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.111 0.889 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.752 18.785 14.731 24.555 hybrid contribution 1.037 -0.467 -1.130 1.603 sum -4.715 18.317 13.601 23.297 Atomic orbital electron populations 1.20103 0.89930 1.02167 1.01399 1.20825 0.96024 0.91411 1.07554 1.21989 0.82364 0.99825 1.09670 1.41553 1.08818 1.06410 1.56033 0.72160 1.22319 0.98242 0.84804 1.01707 1.20422 0.94728 0.91810 1.21306 1.17863 0.84950 0.85246 0.74416 1.90698 1.19121 1.84518 1.52933 1.45418 1.09850 1.04764 1.75023 1.21721 0.99310 0.80373 0.96488 0.89207 1.23425 0.97413 1.00139 0.97310 1.22667 0.96148 0.96624 0.97289 0.89421 1.20826 0.94389 0.95212 0.86196 1.42579 1.69876 1.07581 1.18742 1.19636 1.29182 0.89032 1.00034 0.90748 1.25576 1.02992 1.00162 0.98198 1.69809 1.50793 1.26641 1.14866 0.85208 0.78241 0.79146 0.77153 1.20555 1.22111 1.20203 1.23218 0.96948 0.99731 0.95435 0.92638 0.93302 0.90028 0.78152 0.78114 0.75314 0.89870 0.93327 0.95889 0.96366 0.79539 0.94036 0.88855 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 9.98 71.24 0.71 -1.03 16 2 C -0.15 -3.34 6.35 -18.51 -0.12 -3.45 16 3 C -0.01 -0.14 11.82 83.12 0.98 0.84 16 4 N -0.53 -5.32 5.90 -194.55 -1.15 -6.47 16 5 H 0.44 0.95 8.96 -92.71 -0.83 0.12 16 6 C 0.07 0.99 11.40 83.92 0.96 1.95 16 7 C -0.27 -6.44 6.29 -19.04 -0.12 -6.56 16 8 C 0.58 17.20 7.81 86.61 0.68 17.87 16 9 O -0.59 -22.17 14.92 -4.12 -0.06 -22.23 16 10 N -0.70 -17.03 5.25 -443.45 -2.33 -19.36 16 11 C 0.13 3.37 4.32 45.52 0.20 3.56 16 12 H 0.09 2.61 7.46 -2.39 -0.02 2.59 16 13 C -0.14 -4.55 7.43 31.12 0.23 -4.32 16 14 C -0.11 -3.33 3.63 -10.27 -0.04 -3.37 16 15 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 16 C 0.16 6.35 6.10 86.38 0.53 6.88 16 17 N -0.75 -38.51 5.60 -343.46 -1.92 -40.44 16 18 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 19 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 21 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 22 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 26 C -0.11 -2.63 7.39 31.12 0.23 -2.40 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.35 6.86 -2.38 -0.02 1.34 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.20 1.57 7.45 -2.91 -0.02 1.55 16 32 H 0.41 7.53 7.64 -92.71 -0.71 6.82 16 33 H 0.08 2.71 7.90 -2.39 -0.02 2.69 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.02 0.74 7.84 -2.39 -0.02 0.72 16 37 H 0.37 20.47 7.67 -92.71 -0.71 19.76 16 38 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.11 2.23 8.10 -2.39 -0.02 2.21 16 Total: -1.00 -79.01 336.55 1.21 -77.80 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -1.18 Total: 29.16 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.54 Total: -7.28 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -5.12 Total: -126.10 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.06 Total: -22.23 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -79.01 1.21 -77.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283102637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.278 kcal (2) G-P(sol) polarization free energy of solvation -79.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds