Wall clock time and date at job start Mon Mar 30 2020 02:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35311 * 126.13081 * 2 1 4 4 C 1.39872 * 107.92289 * 180.14522 * 3 2 1 5 5 C 1.50693 * 125.89969 * 179.86205 * 4 3 2 6 6 C 1.52997 * 109.47406 * 124.71229 * 5 4 3 7 7 C 1.50702 * 109.47261 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00113 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99710 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99602 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46602 * 184.79227 * 10 9 7 12 12 C 1.50694 * 115.55031 * 294.81113 * 11 10 9 13 13 H 1.08008 * 119.99906 * 95.20931 * 12 11 10 14 14 C 1.37882 * 120.00284 * 274.93190 * 12 11 10 15 15 N 1.31509 * 119.99919 * 355.42076 * 14 12 11 16 16 Si 1.86800 * 120.00242 * 175.41794 * 14 12 11 17 17 H 1.48502 * 109.47002 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47091 * 119.99801 * 16 14 12 19 19 H 1.48497 * 109.47138 * 240.00628 * 16 14 12 20 20 C 1.53003 * 117.49932 * 80.48439 * 11 10 9 21 21 C 1.52998 * 117.49502 * 149.14583 * 11 10 9 22 22 N 1.30836 * 108.20127 * 359.59965 * 4 3 2 23 23 N 1.34956 * 126.12454 * 179.70393 * 2 1 3 24 24 H 0.96998 * 126.03672 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47182 * 270.27086 * 1 2 3 26 26 H 1.09001 * 109.47301 * 30.27010 * 1 2 3 27 27 H 1.08998 * 109.47431 * 150.27300 * 1 2 3 28 28 H 1.08005 * 126.03982 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.47106 * 4.71511 * 5 4 3 30 30 H 1.09002 * 109.46978 * 244.71537 * 5 4 3 31 31 H 1.09003 * 109.46759 * 60.00069 * 6 5 4 32 32 H 1.08998 * 109.47657 * 300.00460 * 6 5 4 33 33 H 0.97004 * 119.99767 * 359.97438 * 9 7 6 34 34 H 1.08993 * 109.47604 * 64.79661 * 10 9 7 35 35 H 1.09000 * 109.47101 * 304.78675 * 10 9 7 36 36 H 0.97004 * 120.00506 * 184.99920 * 15 14 12 37 37 H 1.08997 * 117.49622 * 214.99831 * 20 11 10 38 38 H 1.09000 * 117.49928 * 0.02562 * 20 11 10 39 39 H 1.08996 * 117.50254 * 359.97148 * 21 11 10 40 40 H 1.09005 * 117.49689 * 144.97447 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 -0.0034 5 6 4.8543 1.5393 -0.0075 6 6 5.7524 1.1738 1.1760 7 6 6.9735 2.0569 1.1715 8 8 7.1117 2.8963 0.3071 9 7 7.9121 1.9138 2.1281 10 6 9.0989 2.7727 2.1241 11 6 10.0535 2.3286 3.2343 12 6 9.5389 2.4984 4.6404 13 1 9.0630 1.6705 5.1450 14 6 9.6805 3.7091 5.2850 15 7 10.3437 4.6874 4.7083 16 14 8.9305 3.9596 6.9774 17 1 8.2416 2.7147 7.4027 18 1 10.0031 4.2883 7.9504 19 1 7.9511 5.0745 6.9246 20 6 10.9537 1.1241 2.9521 21 6 11.5518 2.5324 3.0010 22 7 3.6334 -0.6525 0.0034 23 7 2.3026 -1.0901 0.0056 24 1 2.0054 -2.0134 0.0108 25 1 -0.3633 0.0049 1.0277 26 1 -0.3634 0.8876 -0.5180 27 1 -0.3634 -0.8924 -0.5096 28 1 1.9741 2.1210 0.0004 29 1 4.5484 2.5821 0.0770 30 1 5.4033 1.3959 -0.9382 31 1 6.0582 0.1310 1.0915 32 1 5.2034 1.3171 2.1067 33 1 7.8014 1.2427 2.8197 34 1 8.7997 3.8068 2.2943 35 1 9.6012 2.6938 1.1599 36 1 10.5059 5.5135 5.1901 37 1 11.1737 0.4545 3.7836 38 1 10.8663 0.6483 1.9754 39 1 11.8575 2.9823 2.0565 40 1 12.1652 2.7895 3.8646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297250926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:48 Heat of formation + Delta-G solvation = 39.179489 kcal Electronic energy + Delta-G solvation = -20560.843662 eV Core-core repulsion = 17377.217022 eV Total energy + Delta-G solvation = -3183.626640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36656 -39.04070 -36.68374 -34.26047 -33.21234 -32.03615 -31.93798 -30.39167 -27.20592 -26.73639 -25.43712 -23.95161 -21.14002 -20.73154 -19.79336 -19.53175 -19.10204 -17.53720 -16.62061 -15.97062 -15.39743 -15.09427 -14.81808 -14.61732 -14.05161 -13.90755 -13.60294 -13.51350 -13.20691 -12.97064 -12.69045 -12.56695 -12.04314 -11.85071 -11.73469 -11.52482 -11.11411 -10.99347 -10.91717 -10.52751 -10.50015 -10.21327 -9.58232 -9.42847 -9.15519 -9.01135 -8.74457 -8.47792 -8.22250 -8.04286 -6.06209 -4.15893 1.70787 2.64689 2.71154 3.25614 3.28595 3.34808 3.36803 3.93608 4.36232 4.42535 4.60316 4.78030 5.10037 5.13606 5.20407 5.22867 5.33442 5.43984 5.45595 5.61170 5.68851 5.85477 5.92203 6.07510 6.17057 6.20726 6.37254 6.51054 6.56139 6.60714 6.73708 6.91824 7.13386 7.14609 7.33713 7.42938 7.55907 7.59011 7.82679 8.34988 8.36759 8.85480 8.94415 9.51232 11.01013 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.003378 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.865796 B = 8287.787195 C = 8943.915092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.081 3.919 3 C -0.267 4.267 4 C 0.087 3.913 5 C -0.023 4.023 6 C -0.134 4.134 7 C 0.504 3.496 8 O -0.561 6.561 9 N -0.704 5.704 10 C 0.163 3.837 11 C 0.024 3.976 12 C -0.499 4.499 13 H 0.060 0.940 14 C 0.073 3.927 15 N -0.875 5.875 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.211 4.211 21 C -0.143 4.143 22 N -0.292 5.292 23 N -0.480 5.480 24 H 0.435 0.565 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.401 0.599 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.796 -9.427 -7.544 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C -0.296 4.296 4 C -0.080 4.080 5 C -0.063 4.063 6 C -0.174 4.174 7 C 0.290 3.710 8 O -0.440 6.440 9 N -0.353 5.353 10 C 0.040 3.960 11 C 0.023 3.977 12 C -0.537 4.537 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.209 1.209 20 C -0.248 4.248 21 C -0.181 4.181 22 N -0.115 5.115 23 N -0.188 5.188 24 H 0.278 0.722 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.165 0.835 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.235 0.765 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.947 -9.622 -8.141 20.327 hybrid contribution -1.016 0.134 1.377 1.716 sum -16.963 -9.488 -6.764 20.580 Atomic orbital electron populations 1.20448 0.87364 1.03827 1.03420 1.21107 0.94528 0.87898 1.01253 1.21224 0.91717 0.99268 1.17404 1.22416 0.95871 0.91512 0.98162 1.19771 0.89997 0.97310 0.99172 1.21581 0.94904 1.00741 1.00217 1.20508 0.84357 0.84357 0.81821 1.90648 1.78688 1.36725 1.37981 1.46008 1.21831 1.38609 1.28839 1.20982 0.84536 0.94008 0.96510 1.19054 0.88600 0.95865 0.94177 1.20402 1.39516 0.96858 0.96933 0.92152 1.24993 0.94773 0.95779 0.97579 1.70000 1.39056 1.05335 1.36678 0.86576 0.79225 0.78269 0.84160 1.19712 1.21056 1.20926 1.23016 1.10081 0.91960 0.99779 1.22466 0.98804 0.96449 1.00377 1.77322 0.95899 1.12718 1.25546 1.46303 1.04214 1.08072 1.60227 0.72158 0.90143 0.89548 0.91233 0.83473 0.89077 0.89387 0.88772 0.89088 0.76492 0.91509 0.94228 0.92934 0.90429 0.91717 0.91835 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.43 36.00 0.38 -0.09 16 2 C 0.08 0.74 7.21 -82.26 -0.59 0.15 16 3 C -0.27 -2.97 10.64 -40.01 -0.43 -3.40 16 4 C 0.09 1.13 6.49 -82.41 -0.53 0.60 16 5 C -0.02 -0.31 5.08 -27.89 -0.14 -0.45 16 6 C -0.13 -1.90 5.66 -27.88 -0.16 -2.06 16 7 C 0.50 9.35 7.83 -10.98 -0.09 9.26 16 8 O -0.56 -12.25 15.98 5.56 0.09 -12.16 16 9 N -0.70 -13.78 5.48 -60.29 -0.33 -14.11 16 10 C 0.16 3.73 5.50 -4.04 -0.02 3.71 16 11 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 12 C -0.50 -12.92 8.59 -34.44 -0.30 -13.22 16 13 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 14 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 15 N -0.87 -24.36 12.65 55.43 0.70 -23.65 16 16 Si 0.89 20.62 29.54 -169.99 -5.02 15.59 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.21 -4.47 9.96 -26.69 -0.27 -4.74 16 21 C -0.14 -3.32 9.14 -26.69 -0.24 -3.56 16 22 N -0.29 -3.87 12.67 33.67 0.43 -3.44 16 23 N -0.48 -4.74 7.36 33.48 0.25 -4.49 16 24 H 0.43 2.86 8.96 -182.61 -1.64 1.22 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 30 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.40 7.23 8.33 -40.82 -0.34 6.89 16 34 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 35 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -31.76 345.60 -8.83 -40.60 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.43 Total: 8.09 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.72 Total: -11.62 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 1.04 Total: -45.70 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.76 -8.83 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297250926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.776 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds