Wall clock time and date at job start Mon Mar 30 2020 02:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35311 * 126.13081 * 2 1 4 4 C 1.39872 * 107.92289 * 180.14522 * 3 2 1 5 5 C 1.50693 * 125.89969 * 179.86205 * 4 3 2 6 6 C 1.52997 * 109.47406 * 124.71229 * 5 4 3 7 7 C 1.50702 * 109.47261 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00113 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99710 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99602 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46602 * 184.79227 * 10 9 7 12 12 C 1.50694 * 115.55031 * 294.81113 * 11 10 9 13 13 H 1.08008 * 119.99906 * 95.20931 * 12 11 10 14 14 C 1.37882 * 120.00284 * 274.93190 * 12 11 10 15 15 N 1.31509 * 119.99919 * 355.42076 * 14 12 11 16 16 Si 1.86800 * 120.00242 * 175.41794 * 14 12 11 17 17 H 1.48502 * 109.47002 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47091 * 119.99801 * 16 14 12 19 19 H 1.48497 * 109.47138 * 240.00628 * 16 14 12 20 20 C 1.53003 * 117.49932 * 80.48439 * 11 10 9 21 21 C 1.52998 * 117.49502 * 149.14583 * 11 10 9 22 22 N 1.30836 * 108.20127 * 359.59965 * 4 3 2 23 23 N 1.34956 * 126.12454 * 179.70393 * 2 1 3 24 24 H 0.96998 * 126.03672 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47182 * 270.27086 * 1 2 3 26 26 H 1.09001 * 109.47301 * 30.27010 * 1 2 3 27 27 H 1.08998 * 109.47431 * 150.27300 * 1 2 3 28 28 H 1.08005 * 126.03982 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.47106 * 4.71511 * 5 4 3 30 30 H 1.09002 * 109.46978 * 244.71537 * 5 4 3 31 31 H 1.09003 * 109.46759 * 60.00069 * 6 5 4 32 32 H 1.08998 * 109.47657 * 300.00460 * 6 5 4 33 33 H 0.97004 * 119.99767 * 359.97438 * 9 7 6 34 34 H 1.08993 * 109.47604 * 64.79661 * 10 9 7 35 35 H 1.09000 * 109.47101 * 304.78675 * 10 9 7 36 36 H 0.97004 * 120.00506 * 184.99920 * 15 14 12 37 37 H 1.08997 * 117.49622 * 214.99831 * 20 11 10 38 38 H 1.09000 * 117.49928 * 0.02562 * 20 11 10 39 39 H 1.08996 * 117.50254 * 359.97148 * 21 11 10 40 40 H 1.09005 * 117.49689 * 144.97447 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 -0.0034 5 6 4.8543 1.5393 -0.0075 6 6 5.7524 1.1738 1.1760 7 6 6.9735 2.0569 1.1715 8 8 7.1117 2.8963 0.3071 9 7 7.9121 1.9138 2.1281 10 6 9.0989 2.7727 2.1241 11 6 10.0535 2.3286 3.2343 12 6 9.5389 2.4984 4.6404 13 1 9.0630 1.6705 5.1450 14 6 9.6805 3.7091 5.2850 15 7 10.3437 4.6874 4.7083 16 14 8.9305 3.9596 6.9774 17 1 8.2416 2.7147 7.4027 18 1 10.0031 4.2883 7.9504 19 1 7.9511 5.0745 6.9246 20 6 10.9537 1.1241 2.9521 21 6 11.5518 2.5324 3.0010 22 7 3.6334 -0.6525 0.0034 23 7 2.3026 -1.0901 0.0056 24 1 2.0054 -2.0134 0.0108 25 1 -0.3633 0.0049 1.0277 26 1 -0.3634 0.8876 -0.5180 27 1 -0.3634 -0.8924 -0.5096 28 1 1.9741 2.1210 0.0004 29 1 4.5484 2.5821 0.0770 30 1 5.4033 1.3959 -0.9382 31 1 6.0582 0.1310 1.0915 32 1 5.2034 1.3171 2.1067 33 1 7.8014 1.2427 2.8197 34 1 8.7997 3.8068 2.2943 35 1 9.6012 2.6938 1.1599 36 1 10.5059 5.5135 5.1901 37 1 11.1737 0.4545 3.7836 38 1 10.8663 0.6483 1.9754 39 1 11.8575 2.9823 2.0565 40 1 12.1652 2.7895 3.8646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297250926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:48 Heat of formation + Delta-G solvation = 18.523803 kcal Electronic energy + Delta-G solvation = -20561.739360 eV Core-core repulsion = 17377.217022 eV Total energy + Delta-G solvation = -3184.522338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.18565 -40.61773 -38.48713 -35.28484 -34.90378 -33.94614 -32.75473 -31.37694 -28.40337 -27.81314 -27.32090 -25.31322 -22.93358 -21.54098 -21.34439 -20.98592 -20.42724 -18.43511 -18.20289 -17.63270 -16.78858 -16.55374 -16.50983 -15.91522 -15.51712 -14.99667 -14.83702 -14.55263 -14.37941 -14.15621 -13.71491 -13.54284 -13.50253 -13.35150 -12.94657 -12.91539 -12.85112 -12.77088 -12.31936 -12.20070 -12.02024 -11.43604 -11.40173 -10.93726 -10.88320 -10.43745 -10.23129 -10.00855 -9.80487 -9.53033 -8.08595 -6.23009 0.92381 1.41877 1.45686 1.54932 1.75299 1.78079 2.00258 2.41145 2.47232 3.19374 3.49878 3.66394 3.79398 4.00557 4.13154 4.22275 4.28360 4.38233 4.56044 4.65560 4.68291 4.69890 4.75051 4.78380 4.86134 5.00466 5.01118 5.06721 5.11921 5.15193 5.29268 5.29854 5.57078 5.62055 5.69038 5.73126 5.79475 6.37761 6.48597 6.75120 6.79443 6.86145 7.41257 7.47027 8.98621 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.003378 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.865796 B = 8287.787195 C = 8943.915092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.095 3.905 3 C -0.294 4.294 4 C 0.073 3.927 5 C -0.017 4.017 6 C -0.117 4.117 7 C 0.504 3.496 8 O -0.595 6.595 9 N -0.702 5.702 10 C 0.178 3.822 11 C 0.003 3.997 12 C -0.505 4.505 13 H 0.064 0.936 14 C 0.023 3.977 15 N -0.908 5.908 16 Si 0.951 3.049 17 H -0.261 1.261 18 H -0.284 1.284 19 H -0.288 1.288 20 C -0.178 4.178 21 C -0.154 4.154 22 N -0.325 5.325 23 N -0.472 5.472 24 H 0.448 0.552 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.410 0.590 34 H 0.026 0.974 35 H 0.037 0.963 36 H 0.259 0.741 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.994 -11.283 -7.182 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.034 4.034 3 C -0.323 4.323 4 C -0.093 4.093 5 C -0.057 4.057 6 C -0.158 4.158 7 C 0.292 3.708 8 O -0.477 6.477 9 N -0.351 5.351 10 C 0.054 3.946 11 C 0.002 3.998 12 C -0.542 4.542 13 H 0.082 0.918 14 C -0.177 4.177 15 N -0.546 5.546 16 Si 0.777 3.223 17 H -0.185 1.185 18 H -0.210 1.210 19 H -0.214 1.214 20 C -0.216 4.216 21 C -0.192 4.192 22 N -0.150 5.150 23 N -0.183 5.183 24 H 0.295 0.705 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.175 0.825 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.246 0.754 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.159 -11.526 -7.767 22.868 hybrid contribution -0.381 0.668 1.214 1.437 sum -18.540 -10.858 -6.553 22.462 Atomic orbital electron populations 1.20608 0.84135 1.05378 1.04682 1.21699 0.96303 0.86873 0.98548 1.21491 0.91321 1.00608 1.18844 1.22319 0.96219 0.91598 0.99117 1.19639 0.90299 0.97506 0.98258 1.21507 0.92807 1.00142 1.01315 1.21246 0.84904 0.84089 0.80601 1.90632 1.79477 1.38385 1.39252 1.45923 1.21249 1.38358 1.29560 1.20556 0.85545 0.92468 0.96040 1.19088 0.88843 0.98197 0.93650 1.20712 1.38884 0.96791 0.97847 0.91803 1.25719 0.95266 0.95739 1.01004 1.70122 1.40623 1.05743 1.38074 0.85621 0.78246 0.78232 0.80227 1.18495 1.21013 1.21385 1.23000 1.06663 0.90776 1.01118 1.22389 0.98389 0.98677 0.99790 1.77221 0.97970 1.12861 1.26914 1.46345 1.03363 1.09156 1.59400 0.70531 0.88833 0.88478 0.89244 0.82452 0.89367 0.90522 0.87420 0.87565 0.75387 0.95510 0.94467 0.93207 0.89686 0.89477 0.91315 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.43 71.24 0.74 0.15 16 2 C 0.10 1.52 7.21 41.40 0.30 1.82 16 3 C -0.29 -6.11 10.64 21.99 0.23 -5.88 16 4 C 0.07 1.84 6.49 43.10 0.28 2.12 16 5 C -0.02 -0.46 5.08 29.84 0.15 -0.31 16 6 C -0.12 -3.22 5.66 29.85 0.17 -3.05 16 7 C 0.50 18.57 7.83 87.66 0.69 19.26 16 8 O -0.60 -26.41 15.98 -3.01 -0.05 -26.46 16 9 N -0.70 -27.17 5.48 -463.06 -2.54 -29.70 16 10 C 0.18 8.27 5.50 86.38 0.48 8.75 16 11 C 0.00 0.14 1.47 -52.93 -0.08 0.06 16 12 C -0.50 -25.93 8.59 25.60 0.22 -25.71 16 13 H 0.06 3.17 7.82 -2.91 -0.02 3.15 16 14 C 0.02 1.24 5.43 84.66 0.46 1.70 16 15 N -0.91 -51.57 12.65 21.45 0.27 -51.30 16 16 Si 0.95 42.32 29.54 68.60 2.03 44.34 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 20 C -0.18 -7.26 9.96 30.62 0.30 -6.96 16 21 C -0.15 -7.18 9.14 30.62 0.28 -6.90 16 22 N -0.33 -8.23 12.67 -47.39 -0.60 -8.83 16 23 N -0.47 -8.36 7.36 -48.00 -0.35 -8.71 16 24 H 0.45 4.86 8.96 -213.33 -1.91 2.95 16 25 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.09 0.27 8.14 -2.39 -0.02 0.26 16 28 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 29 H 0.09 2.37 8.08 -2.39 -0.02 2.35 16 30 H 0.08 2.19 8.10 -2.39 -0.02 2.18 16 31 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.41 14.29 8.33 -92.71 -0.77 13.52 16 34 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.04 1.72 8.09 -2.39 -0.02 1.70 16 36 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 37 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.06 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -68.71 345.60 1.35 -67.36 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -1.63 Total: 28.26 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 4.22 Total: -14.96 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -3.22 Total: -98.55 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -68.71 1.35 -67.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297250926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.888 kcal (2) G-P(sol) polarization free energy of solvation -68.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds