Wall clock time and date at job start Mon Mar 30 2020 01:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38624 * 120.47282 * 2 1 4 4 C 1.38588 * 118.49078 * 179.71590 * 3 2 1 5 5 C 1.38605 * 119.34476 * 0.57874 * 4 3 2 6 6 N 1.31494 * 120.90425 * 359.68587 * 5 4 3 7 7 C 1.32745 * 121.64356 * 0.02562 * 6 5 4 8 8 C 1.48168 * 119.72607 * 180.02562 * 7 6 5 9 9 O 1.21506 * 120.00029 * 174.17630 * 8 7 6 10 10 N 1.34784 * 119.99434 * 354.17866 * 8 7 6 11 11 C 1.46500 * 119.99394 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46552 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47097 * 180.02562 * 12 11 10 14 14 N 1.46502 * 109.47335 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99813 * 90.00305 * 14 13 12 16 16 C 1.36931 * 119.99820 * 269.99718 * 14 13 12 17 17 H 1.08002 * 119.99965 * 22.48134 * 16 14 13 18 18 C 1.38813 * 120.00090 * 202.47687 * 16 14 13 19 19 N 1.31620 * 119.99714 * 17.39153 * 18 16 14 20 20 Si 1.86801 * 120.00240 * 197.38645 * 18 16 14 21 21 H 1.48498 * 109.46927 * 60.00248 * 20 18 16 22 22 H 1.48497 * 109.47265 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47279 * 300.00624 * 20 18 16 24 24 H 1.09001 * 109.46876 * 262.63365 * 1 2 3 25 25 H 1.08992 * 109.47653 * 142.62526 * 1 2 3 26 26 H 1.09008 * 109.46893 * 22.62755 * 1 2 3 27 27 H 1.08005 * 120.75605 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.32555 * 180.28604 * 4 3 2 29 29 H 1.08001 * 119.54503 * 179.70209 * 5 4 3 30 30 H 0.96995 * 119.99939 * 0.02562 * 10 8 7 31 31 H 1.09000 * 109.47145 * 300.00018 * 11 10 8 32 32 H 1.08995 * 109.47007 * 60.00270 * 11 10 8 33 33 H 1.09000 * 109.47243 * 299.99753 * 12 11 10 34 34 H 1.09003 * 109.47769 * 60.00276 * 12 11 10 35 35 H 1.09000 * 109.46852 * 299.99968 * 13 12 11 36 36 H 1.09001 * 109.47180 * 60.00025 * 13 12 11 37 37 H 1.08998 * 109.47472 * 95.13805 * 15 14 13 38 38 H 1.09002 * 109.46783 * 215.13782 * 15 14 13 39 39 H 1.09002 * 109.47208 * 335.12589 * 15 14 13 40 40 H 0.97000 * 119.99503 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5951 1.1468 0.0060 5 6 4.2322 -0.0841 -0.0003 6 7 3.5406 -1.2025 -0.0058 7 6 2.2132 -1.2005 -0.0060 8 6 1.4765 -2.4860 -0.0117 9 8 0.2662 -2.4931 0.0949 10 7 2.1491 -3.6475 -0.1351 11 6 1.4208 -4.9186 -0.1402 12 6 2.4125 -6.0739 -0.2909 13 6 1.6519 -7.4014 -0.2969 14 7 2.6014 -8.5076 -0.4419 15 6 3.1877 -9.1303 0.7476 16 6 2.9409 -8.9596 -1.6891 17 1 2.8221 -8.3153 -2.5477 18 6 3.4376 -10.2458 -1.8499 19 7 3.2695 -11.1398 -0.8986 20 14 4.3445 -10.7078 -3.4162 21 1 5.5395 -9.8398 -3.5706 22 1 4.7714 -12.1280 -3.3405 23 1 3.4442 -10.5225 -4.5825 24 1 -0.3633 -0.1318 1.0192 25 1 -0.3634 -0.8166 -0.6238 26 1 -0.3633 0.9486 -0.3954 27 1 1.6902 2.1415 -0.0004 28 1 4.1723 2.0596 0.0109 29 1 5.3114 -0.1252 -0.0006 30 1 3.1154 -3.6417 -0.2198 31 1 0.8752 -5.0285 0.7970 32 1 0.7182 -4.9314 -0.9734 33 1 2.9585 -5.9642 -1.2280 34 1 3.1149 -6.0610 0.5425 35 1 1.1057 -7.5114 0.6399 36 1 0.9498 -7.4142 -1.1306 37 1 2.6065 -10.0111 1.0205 38 1 4.2153 -9.4248 0.5344 39 1 3.1777 -8.4182 1.5728 40 1 3.6170 -12.0384 -1.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316819642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:15 Heat of formation + Delta-G solvation = -4.525930 kcal Electronic energy + Delta-G solvation = -20571.944378 eV Core-core repulsion = 17386.422528 eV Total energy + Delta-G solvation = -3185.521850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.75731 -39.98260 -37.97715 -36.35240 -34.55989 -33.76233 -33.02738 -31.57681 -28.57484 -27.92745 -27.05033 -25.39752 -23.71804 -22.97290 -22.20040 -21.59068 -19.02041 -18.71933 -17.81658 -17.02728 -16.84983 -16.54046 -16.43995 -15.91908 -15.76226 -15.27736 -14.99658 -14.59011 -14.46254 -14.38187 -14.02105 -13.69025 -13.38693 -13.31764 -13.00556 -12.92378 -12.77510 -12.62283 -12.49508 -12.32036 -12.11315 -11.84301 -11.50627 -11.11959 -10.77504 -10.62746 -10.42783 -10.25288 -9.86586 -8.78719 -7.83154 -5.30922 -0.34792 0.24464 1.46719 1.49424 1.56132 1.70613 2.07736 2.52365 2.83981 3.16613 3.29409 3.64726 3.75378 3.85682 3.96773 4.05461 4.10244 4.25838 4.46514 4.50863 4.57190 4.64701 4.75993 4.78642 4.80581 4.84823 4.90937 5.10092 5.16197 5.21907 5.27363 5.30908 5.46064 5.49734 5.63513 5.68558 5.69534 6.32676 6.39795 6.80960 7.11928 7.14952 7.87709 8.31711 9.20066 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028540 B = 0.002976 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.832399 B = 9407.767014 C = 9820.094324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.086 4.086 4 C -0.130 4.130 5 C 0.079 3.921 6 N -0.479 5.479 7 C 0.041 3.959 8 C 0.560 3.440 9 O -0.558 6.558 10 N -0.704 5.704 11 C 0.131 3.869 12 C -0.128 4.128 13 C 0.152 3.848 14 N -0.620 5.620 15 C 0.172 3.828 16 C -0.267 4.267 17 H 0.070 0.930 18 C -0.054 4.054 19 N -0.938 5.938 20 Si 0.968 3.032 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.275 1.275 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.174 0.826 28 H 0.181 0.819 29 H 0.189 0.811 30 H 0.414 0.586 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.005 0.995 38 H 0.013 0.987 39 H 0.035 0.965 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 28.331 2.889 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.081 4.081 6 N -0.191 5.191 7 C -0.096 4.096 8 C 0.346 3.654 9 O -0.438 6.438 10 N -0.355 5.355 11 C 0.007 3.993 12 C -0.169 4.169 13 C 0.025 3.975 14 N -0.343 5.343 15 C 0.027 3.973 16 C -0.397 4.397 17 H 0.088 0.912 18 C -0.249 4.249 19 N -0.584 5.584 20 Si 0.796 3.204 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.201 1.201 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.191 0.809 28 H 0.198 0.802 29 H 0.206 0.794 30 H 0.251 0.749 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.023 0.977 38 H 0.032 0.968 39 H 0.053 0.947 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.024 27.261 2.975 27.423 hybrid contribution 0.548 -0.226 -0.698 0.915 sum 0.572 27.036 2.277 27.138 Atomic orbital electron populations 1.20975 0.88989 1.03674 1.03300 1.21167 0.98741 0.92898 0.96136 1.21984 0.94781 0.98188 0.96204 1.22843 0.95182 1.00692 0.96199 1.23409 1.01827 0.87278 0.95600 1.67483 1.06828 1.33973 1.10796 1.20868 0.90554 0.93273 1.04884 1.18308 0.86529 0.83970 0.76543 1.90709 1.14203 1.87297 1.51583 1.45944 1.11986 1.05372 1.72183 1.21272 0.94682 0.81380 1.01971 1.22168 0.98441 0.94293 1.01970 1.20763 0.90841 0.86254 0.99630 1.44151 1.49647 1.37593 1.02915 1.20556 0.95845 0.94113 0.86748 1.19477 1.37916 0.95574 0.86699 0.91185 1.25778 1.02914 0.95400 1.00857 1.70246 1.49018 1.03254 1.35878 0.85335 0.78999 0.76413 0.79689 1.20463 1.22044 1.20050 0.90958 0.90880 0.89449 0.80861 0.80161 0.79388 0.74919 0.91357 0.91795 0.92474 0.91874 0.93051 0.93668 0.97689 0.96797 0.94670 0.94237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 8.72 71.24 0.62 -1.54 16 2 C -0.09 -1.71 5.93 -19.52 -0.12 -1.83 16 3 C -0.09 -1.04 9.83 22.45 0.22 -0.82 16 4 C -0.13 -1.24 10.12 22.44 0.23 -1.02 16 5 C 0.08 1.14 11.18 84.83 0.95 2.09 16 6 N -0.48 -10.75 9.56 -184.90 -1.77 -12.52 16 7 C 0.04 1.02 6.75 41.90 0.28 1.30 16 8 C 0.56 16.66 7.75 86.88 0.67 17.33 16 9 O -0.56 -18.78 13.32 -3.73 -0.05 -18.82 16 10 N -0.70 -20.08 5.54 -465.67 -2.58 -22.66 16 11 C 0.13 3.91 5.67 86.38 0.49 4.40 16 12 C -0.13 -4.32 5.65 30.59 0.17 -4.15 16 13 C 0.15 6.17 5.64 86.38 0.49 6.65 16 14 N -0.62 -31.71 2.92 -726.94 -2.12 -33.83 16 15 C 0.17 8.69 9.00 127.77 1.15 9.84 16 16 C -0.27 -14.91 9.63 84.03 0.81 -14.10 16 17 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 18 C -0.05 -3.10 5.01 84.86 0.42 -2.68 16 19 N -0.94 -56.67 10.94 21.65 0.24 -56.44 16 20 Si 0.97 45.68 29.59 68.60 2.03 47.71 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.82 5.88 -2.39 -0.01 1.81 16 26 H 0.09 1.10 8.05 -2.38 -0.02 1.08 16 27 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 28 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 29 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 30 H 0.41 11.02 7.82 -92.71 -0.72 10.30 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 36 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 37 H 0.00 0.27 7.34 -2.39 -0.02 0.25 16 38 H 0.01 0.73 7.42 -2.39 -0.02 0.71 16 39 H 0.03 1.48 8.03 -2.39 -0.02 1.47 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -71.56 335.81 2.45 -69.11 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.31 Total: 11.96 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 6.39 Total: 15.49 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -6.23 Total: -125.45 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.56 2.45 -69.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316819642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.583 kcal (2) G-P(sol) polarization free energy of solvation -71.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds