Wall clock time and date at job start Mon Mar 30 2020 02:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 120.50144 * 2 1 4 4 N 1.31796 * 120.89200 * 180.02562 * 3 2 1 5 5 C 1.31826 * 122.05522 * 359.97438 * 4 3 2 6 6 C 1.38129 * 120.89374 * 0.02562 * 5 4 3 7 7 C 1.39799 * 120.49803 * 180.02562 * 2 1 3 8 8 C 1.48150 * 120.92395 * 0.02562 * 7 2 1 9 9 O 1.21512 * 120.00078 * 353.61394 * 8 7 2 10 10 N 1.34781 * 120.00050 * 173.62354 * 8 7 2 11 11 C 1.46495 * 119.99919 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47038 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47436 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47451 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00032 * 90.00004 * 14 13 12 16 16 C 1.36932 * 119.99974 * 269.99507 * 14 13 12 17 17 H 1.07999 * 119.99852 * 23.11402 * 16 14 13 18 18 C 1.38816 * 120.00267 * 203.11128 * 16 14 13 19 19 N 1.31621 * 119.99744 * 11.12884 * 18 16 14 20 20 Si 1.86796 * 120.00146 * 191.12928 * 18 16 14 21 21 H 1.48499 * 109.47150 * 60.00344 * 20 18 16 22 22 H 1.48504 * 109.47161 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47215 * 300.00070 * 20 18 16 24 24 H 1.09004 * 109.47172 * 263.70210 * 1 2 3 25 25 H 1.08999 * 109.46906 * 23.69817 * 1 2 3 26 26 H 1.08998 * 109.47337 * 143.70247 * 1 2 3 27 27 H 1.08001 * 119.54818 * 0.03387 * 3 2 1 28 28 H 1.07992 * 119.55240 * 179.97438 * 5 4 3 29 29 H 1.07995 * 120.49734 * 179.97438 * 6 5 4 30 30 H 0.97000 * 119.99608 * 359.97438 * 10 8 7 31 31 H 1.08994 * 109.47016 * 300.00025 * 11 10 8 32 32 H 1.09005 * 109.47227 * 59.99808 * 11 10 8 33 33 H 1.09003 * 109.47361 * 299.99938 * 12 11 10 34 34 H 1.08995 * 109.47683 * 60.00006 * 12 11 10 35 35 H 1.09005 * 109.47014 * 300.00360 * 13 12 11 36 36 H 1.09001 * 109.47309 * 59.99161 * 13 12 11 37 37 H 1.08994 * 109.47295 * 94.87986 * 15 14 13 38 38 H 1.08996 * 109.46800 * 214.88274 * 15 14 13 39 39 H 1.09005 * 109.46825 * 334.88269 * 15 14 13 40 40 H 0.97000 * 119.99954 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1995 -0.0005 5 6 4.2334 0.0870 -0.0005 6 6 3.6137 -1.1474 -0.0006 7 6 2.2164 -1.2046 -0.0005 8 6 1.5078 -2.5056 -0.0017 9 8 0.2987 -2.5390 0.1149 10 7 2.2041 -3.6522 -0.1318 11 6 1.5034 -4.9387 -0.1324 12 6 2.5183 -6.0721 -0.2937 13 6 1.7864 -7.4157 -0.2950 14 7 2.7582 -8.5010 -0.4501 15 6 3.3684 -9.1126 0.7331 16 6 3.0961 -8.9439 -1.7010 17 1 2.9654 -8.2975 -2.5562 18 6 3.6066 -10.2237 -1.8698 19 7 3.5635 -11.0858 -0.8761 20 14 4.3548 -10.7223 -3.5071 21 1 5.5036 -9.8341 -3.8174 22 1 4.8244 -12.1290 -3.4289 23 1 3.3317 -10.6003 -4.5765 24 1 -0.3634 -0.1127 1.0215 25 1 -0.3633 0.9410 -0.4130 26 1 -0.3634 -0.8282 -0.6083 27 1 1.6691 2.1263 0.0006 28 1 5.3120 0.1415 -0.0014 29 1 4.1993 -2.0547 -0.0010 30 1 3.1693 -3.6255 -0.2251 31 1 0.9680 -5.0612 0.8090 32 1 0.7943 -4.9659 -0.9598 33 1 3.0534 -5.9494 -1.2354 34 1 3.2276 -6.0452 0.5333 35 1 1.2510 -7.5387 0.6465 36 1 1.0772 -7.4425 -1.1223 37 1 2.8060 -10.0034 1.0126 38 1 4.3986 -9.3887 0.5089 39 1 3.3544 -8.4004 1.5582 40 1 3.9199 -11.9801 -0.9942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316821732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:54 Heat of formation + Delta-G solvation = 16.557002 kcal Electronic energy + Delta-G solvation = -20560.472813 eV Core-core repulsion = 17375.865188 eV Total energy + Delta-G solvation = -3184.607625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97126 -39.18646 -36.38345 -35.01469 -33.64489 -32.81086 -31.73860 -29.94620 -27.69531 -26.06451 -25.64812 -24.45740 -22.68311 -21.82030 -21.04996 -20.19543 -18.17375 -17.03828 -16.72319 -15.77349 -15.63769 -15.57528 -15.44721 -14.76997 -14.69280 -13.91669 -13.78203 -13.69784 -13.35837 -12.99870 -12.88917 -12.76597 -12.52469 -11.88350 -11.74983 -11.47453 -11.05934 -10.83152 -10.81217 -10.52583 -10.40204 -10.22725 -10.14048 -9.89049 -9.84944 -9.56923 -9.29798 -9.06760 -8.56654 -6.76764 -5.73973 -3.21772 0.43052 0.73813 2.70982 2.97371 3.36875 3.42201 3.42880 3.52828 4.07539 4.32118 4.42490 4.47511 4.50679 4.66133 5.03349 5.15689 5.30664 5.37268 5.38251 5.41349 5.49662 5.53970 5.73404 5.78001 5.83715 6.01465 6.05138 6.16111 6.30059 6.36186 6.45218 6.70700 6.72527 6.89087 7.34874 7.36804 7.56710 7.71632 7.78559 8.01580 8.38450 9.22353 9.85442 10.34384 11.30843 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.002943 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.257029 B = 9512.130329 C = 9884.211335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C 0.091 3.909 4 N -0.468 5.468 5 C 0.086 3.914 6 C -0.136 4.136 7 C -0.093 4.093 8 C 0.553 3.447 9 O -0.527 6.527 10 N -0.717 5.717 11 C 0.120 3.880 12 C -0.152 4.152 13 C 0.156 3.844 14 N -0.603 5.603 15 C 0.163 3.837 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.909 5.909 20 Si 0.906 3.094 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.283 1.283 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.141 0.859 30 H 0.400 0.600 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.030 0.970 38 H 0.041 0.959 39 H -0.004 1.004 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 21.486 3.102 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.081 4.081 3 C -0.066 4.066 4 N -0.176 5.176 5 C -0.070 4.070 6 C -0.157 4.157 7 C -0.104 4.104 8 C 0.339 3.661 9 O -0.405 6.405 10 N -0.368 5.368 11 C -0.003 4.003 12 C -0.193 4.193 13 C 0.027 3.973 14 N -0.326 5.326 15 C 0.018 3.982 16 C -0.387 4.387 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.179 0.821 28 H 0.179 0.821 29 H 0.158 0.842 30 H 0.235 0.765 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.611 21.983 3.202 22.273 hybrid contribution 0.704 -1.198 -0.896 1.654 sum -0.906 20.785 2.306 20.932 Atomic orbital electron populations 1.20989 0.88974 1.03471 1.03940 1.21147 0.98507 0.92446 0.95962 1.22752 0.89763 0.97401 0.96703 1.67542 1.08336 1.31856 1.09908 1.22726 1.00622 0.87200 0.96501 1.22395 0.93919 1.00356 0.99022 1.20329 0.93816 0.94076 1.02150 1.18168 0.87033 0.83606 0.77311 1.90736 1.13451 1.87056 1.49231 1.46090 1.11173 1.06280 1.73281 1.21533 0.95795 0.80810 1.02193 1.22558 0.98512 0.95882 1.02302 1.20585 0.91163 0.86398 0.99119 1.43884 1.46601 1.38505 1.03597 1.20798 0.97917 0.93882 0.85574 1.19145 1.38332 0.95854 0.85372 0.91484 1.25054 1.01630 0.95506 0.97467 1.70056 1.49240 1.05025 1.31068 0.86321 0.79261 0.77368 0.83479 1.21106 1.21607 1.20897 0.90304 0.91863 0.88541 0.82142 0.82085 0.84170 0.76488 0.91433 0.91297 0.91488 0.92157 0.94367 0.93245 0.95137 0.93976 0.98529 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.84 36.00 0.32 -0.79 16 2 C -0.08 -0.80 5.93 -104.06 -0.62 -1.41 16 3 C 0.09 0.85 10.83 -17.59 -0.19 0.66 16 4 N -0.47 -4.78 10.33 -13.31 -0.14 -4.92 16 5 C 0.09 0.74 11.17 -17.59 -0.20 0.55 16 6 C -0.14 -1.20 9.60 -39.02 -0.37 -1.57 16 7 C -0.09 -1.01 5.91 -104.64 -0.62 -1.63 16 8 C 0.55 7.11 7.73 -12.19 -0.09 7.02 16 9 O -0.53 -8.15 13.54 5.36 0.07 -8.08 16 10 N -0.72 -8.50 5.51 -61.16 -0.34 -8.84 16 11 C 0.12 1.63 5.67 -4.05 -0.02 1.61 16 12 C -0.15 -2.38 5.65 -26.73 -0.15 -2.53 16 13 C 0.16 3.05 5.64 -4.04 -0.02 3.03 16 14 N -0.60 -14.91 2.92 -181.12 -0.53 -15.44 16 15 C 0.16 3.97 8.97 59.85 0.54 4.51 16 16 C -0.26 -6.98 9.66 -15.06 -0.15 -7.12 16 17 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 18 C 0.00 0.05 5.14 -17.43 -0.09 -0.04 16 19 N -0.91 -26.42 10.61 55.49 0.59 -25.83 16 20 Si 0.91 21.63 29.57 -169.99 -5.03 16.60 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.44 8.06 -51.93 -0.42 0.02 16 26 H 0.10 1.12 5.96 -51.93 -0.31 0.81 16 27 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 28 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.14 0.90 6.59 -52.49 -0.35 0.55 16 30 H 0.40 3.84 6.66 -40.82 -0.27 3.57 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 36 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 37 H 0.03 0.81 7.36 -51.93 -0.38 0.42 16 38 H 0.04 1.10 7.28 -51.93 -0.38 0.72 16 39 H 0.00 -0.08 8.04 -51.93 -0.42 -0.50 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -32.13 333.60 -7.88 -40.01 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.87 Total: -0.79 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.67 Total: 2.26 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.42 Total: -55.03 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.07 Total: -8.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.13 -7.88 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316821732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.563 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds