Wall clock time and date at job start Mon Mar 30 2020 02:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 120.50144 * 2 1 4 4 N 1.31796 * 120.89200 * 180.02562 * 3 2 1 5 5 C 1.31826 * 122.05522 * 359.97438 * 4 3 2 6 6 C 1.38129 * 120.89374 * 0.02562 * 5 4 3 7 7 C 1.39799 * 120.49803 * 180.02562 * 2 1 3 8 8 C 1.48150 * 120.92395 * 0.02562 * 7 2 1 9 9 O 1.21512 * 120.00078 * 353.61394 * 8 7 2 10 10 N 1.34781 * 120.00050 * 173.62354 * 8 7 2 11 11 C 1.46495 * 119.99919 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47038 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47436 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47451 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00032 * 90.00004 * 14 13 12 16 16 C 1.36932 * 119.99974 * 269.99507 * 14 13 12 17 17 H 1.07999 * 119.99852 * 23.11402 * 16 14 13 18 18 C 1.38816 * 120.00267 * 203.11128 * 16 14 13 19 19 N 1.31621 * 119.99744 * 11.12884 * 18 16 14 20 20 Si 1.86796 * 120.00146 * 191.12928 * 18 16 14 21 21 H 1.48499 * 109.47150 * 60.00344 * 20 18 16 22 22 H 1.48504 * 109.47161 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47215 * 300.00070 * 20 18 16 24 24 H 1.09004 * 109.47172 * 263.70210 * 1 2 3 25 25 H 1.08999 * 109.46906 * 23.69817 * 1 2 3 26 26 H 1.08998 * 109.47337 * 143.70247 * 1 2 3 27 27 H 1.08001 * 119.54818 * 0.03387 * 3 2 1 28 28 H 1.07992 * 119.55240 * 179.97438 * 5 4 3 29 29 H 1.07995 * 120.49734 * 179.97438 * 6 5 4 30 30 H 0.97000 * 119.99608 * 359.97438 * 10 8 7 31 31 H 1.08994 * 109.47016 * 300.00025 * 11 10 8 32 32 H 1.09005 * 109.47227 * 59.99808 * 11 10 8 33 33 H 1.09003 * 109.47361 * 299.99938 * 12 11 10 34 34 H 1.08995 * 109.47683 * 60.00006 * 12 11 10 35 35 H 1.09005 * 109.47014 * 300.00360 * 13 12 11 36 36 H 1.09001 * 109.47309 * 59.99161 * 13 12 11 37 37 H 1.08994 * 109.47295 * 94.87986 * 15 14 13 38 38 H 1.08996 * 109.46800 * 214.88274 * 15 14 13 39 39 H 1.09005 * 109.46825 * 334.88269 * 15 14 13 40 40 H 0.97000 * 119.99954 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1995 -0.0005 5 6 4.2334 0.0870 -0.0005 6 6 3.6137 -1.1474 -0.0006 7 6 2.2164 -1.2046 -0.0005 8 6 1.5078 -2.5056 -0.0017 9 8 0.2987 -2.5390 0.1149 10 7 2.2041 -3.6522 -0.1318 11 6 1.5034 -4.9387 -0.1324 12 6 2.5183 -6.0721 -0.2937 13 6 1.7864 -7.4157 -0.2950 14 7 2.7582 -8.5010 -0.4501 15 6 3.3684 -9.1126 0.7331 16 6 3.0961 -8.9439 -1.7010 17 1 2.9654 -8.2975 -2.5562 18 6 3.6066 -10.2237 -1.8698 19 7 3.5635 -11.0858 -0.8761 20 14 4.3548 -10.7223 -3.5071 21 1 5.5036 -9.8341 -3.8174 22 1 4.8244 -12.1290 -3.4289 23 1 3.3317 -10.6003 -4.5765 24 1 -0.3634 -0.1127 1.0215 25 1 -0.3633 0.9410 -0.4130 26 1 -0.3634 -0.8282 -0.6083 27 1 1.6691 2.1263 0.0006 28 1 5.3120 0.1415 -0.0014 29 1 4.1993 -2.0547 -0.0010 30 1 3.1693 -3.6255 -0.2251 31 1 0.9680 -5.0612 0.8090 32 1 0.7943 -4.9659 -0.9598 33 1 3.0534 -5.9494 -1.2354 34 1 3.2276 -6.0452 0.5333 35 1 1.2510 -7.5387 0.6465 36 1 1.0772 -7.4425 -1.1223 37 1 2.8060 -10.0034 1.0126 38 1 4.3986 -9.3887 0.5089 39 1 3.3544 -8.4004 1.5582 40 1 3.9199 -11.9801 -0.9942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316821732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:54 Heat of formation + Delta-G solvation = -4.127324 kcal Electronic energy + Delta-G solvation = -20561.369752 eV Core-core repulsion = 17375.865188 eV Total energy + Delta-G solvation = -3185.504565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77833 -40.10571 -37.97909 -36.36996 -34.41822 -34.05062 -33.06094 -31.47640 -28.50526 -27.93483 -27.08306 -25.47652 -23.81568 -22.93346 -22.23920 -21.57211 -19.05510 -18.72264 -17.84587 -16.98757 -16.81534 -16.55889 -16.25131 -16.14664 -15.84004 -15.31075 -15.05421 -14.62717 -14.59442 -14.42888 -14.30093 -13.65003 -13.39358 -13.36795 -12.99331 -12.74948 -12.63673 -12.55730 -12.46440 -12.30640 -12.10199 -11.84743 -11.48686 -11.31757 -10.93101 -10.63060 -10.38493 -10.16483 -9.92278 -8.77026 -7.81669 -5.31615 -0.35387 0.06554 1.47777 1.49485 1.56195 1.79276 1.99894 2.52145 2.79456 3.31968 3.45915 3.51206 3.64910 3.76077 3.81638 3.96225 4.11510 4.26216 4.41315 4.46721 4.61215 4.65348 4.73578 4.76771 4.80620 4.83771 4.86797 4.92778 5.08264 5.23450 5.28570 5.32907 5.44479 5.50955 5.62202 5.64118 5.73484 6.33906 6.41326 6.88704 7.05862 7.16679 7.88790 8.32194 9.21398 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.002943 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.257029 B = 9512.130329 C = 9884.211335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C 0.090 3.910 4 N -0.486 5.486 5 C 0.083 3.917 6 C -0.131 4.131 7 C -0.111 4.111 8 C 0.552 3.448 9 O -0.559 6.559 10 N -0.709 5.709 11 C 0.132 3.868 12 C -0.129 4.129 13 C 0.150 3.850 14 N -0.621 5.621 15 C 0.176 3.824 16 C -0.263 4.263 17 H 0.073 0.927 18 C -0.056 4.056 19 N -0.942 5.942 20 Si 0.970 3.030 21 H -0.276 1.276 22 H -0.296 1.296 23 H -0.276 1.276 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.185 0.815 28 H 0.190 0.810 29 H 0.164 0.836 30 H 0.412 0.588 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.002 0.998 38 H 0.016 0.984 39 H 0.032 0.968 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 23.420 2.730 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.067 4.067 4 N -0.194 5.194 5 C -0.072 4.072 6 C -0.151 4.151 7 C -0.122 4.122 8 C 0.339 3.661 9 O -0.439 6.439 10 N -0.361 5.361 11 C 0.008 3.992 12 C -0.169 4.169 13 C 0.023 3.977 14 N -0.345 5.345 15 C 0.031 3.969 16 C -0.393 4.393 17 H 0.090 0.910 18 C -0.251 4.251 19 N -0.589 5.589 20 Si 0.798 3.202 21 H -0.202 1.202 22 H -0.222 1.222 23 H -0.202 1.202 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.202 0.798 28 H 0.207 0.793 29 H 0.181 0.819 30 H 0.250 0.750 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.020 0.980 38 H 0.035 0.965 39 H 0.051 0.949 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.730 23.965 2.825 24.142 hybrid contribution 0.398 -1.722 -0.747 1.919 sum -0.332 22.243 2.078 22.342 Atomic orbital electron populations 1.20912 0.88843 1.03803 1.03318 1.21306 0.98810 0.92755 0.96371 1.23104 0.89695 0.97953 0.95918 1.67607 1.08778 1.32695 1.10367 1.23231 1.01955 0.86697 0.95363 1.22638 0.93062 1.01546 0.97888 1.20313 0.94862 0.93167 1.03893 1.18482 0.86745 0.84342 0.76509 1.90727 1.14876 1.87562 1.50686 1.45914 1.11783 1.05442 1.72989 1.21243 0.95012 0.80982 1.01957 1.22175 0.98314 0.94213 1.02245 1.20773 0.90687 0.86679 0.99519 1.44146 1.47769 1.39650 1.02929 1.20547 0.95870 0.93826 0.86648 1.19511 1.37382 0.95891 0.86560 0.90974 1.25838 1.02751 0.95749 1.00729 1.70232 1.50610 1.05066 1.32945 0.85306 0.78617 0.76541 0.79760 1.20218 1.22242 1.20194 0.90787 0.89371 0.90918 0.79780 0.79303 0.81854 0.75013 0.91444 0.91978 0.92119 0.91479 0.93196 0.93793 0.98004 0.96498 0.94935 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 8.84 71.23 0.63 -1.42 16 2 C -0.09 -1.72 5.93 -19.50 -0.12 -1.84 16 3 C 0.09 1.50 10.83 84.68 0.92 2.42 16 4 N -0.49 -8.82 10.33 -196.01 -2.03 -10.85 16 5 C 0.08 1.22 11.17 84.67 0.95 2.17 16 6 C -0.13 -1.98 9.60 22.63 0.22 -1.76 16 7 C -0.11 -2.27 5.91 -19.88 -0.12 -2.39 16 8 C 0.55 13.65 7.73 86.88 0.67 14.33 16 9 O -0.56 -17.21 13.54 -3.75 -0.05 -17.26 16 10 N -0.71 -15.57 5.51 -465.70 -2.57 -18.13 16 11 C 0.13 3.39 5.67 86.38 0.49 3.88 16 12 C -0.13 -3.81 5.65 30.59 0.17 -3.64 16 13 C 0.15 5.70 5.64 86.38 0.49 6.19 16 14 N -0.62 -30.42 2.92 -726.94 -2.13 -32.55 16 15 C 0.18 8.57 8.97 127.77 1.15 9.72 16 16 C -0.26 -14.18 9.66 84.04 0.81 -13.37 16 17 H 0.07 3.73 7.85 -2.91 -0.02 3.71 16 18 C -0.06 -3.11 5.14 84.86 0.44 -2.67 16 19 N -0.94 -55.65 10.61 21.65 0.23 -55.42 16 20 Si 0.97 44.49 29.57 68.60 2.03 46.51 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.10 8.06 -2.39 -0.02 1.08 16 26 H 0.07 1.70 5.96 -2.39 -0.01 1.69 16 27 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 28 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.16 1.56 6.59 -2.91 -0.02 1.54 16 30 H 0.41 6.88 6.66 -92.71 -0.62 6.27 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.77 8.07 -2.38 -0.02 1.76 16 36 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 37 H 0.00 0.09 7.36 -2.39 -0.02 0.07 16 38 H 0.02 0.87 7.28 -2.39 -0.02 0.85 16 39 H 0.03 1.31 8.04 -2.38 -0.02 1.29 16 40 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -69.26 333.60 2.60 -66.66 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.42 Total: 9.43 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 6.69 Total: 11.61 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -6.49 Total: -116.95 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.05 Total: -17.26 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -69.26 2.60 -66.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316821732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.533 kcal (2) G-P(sol) polarization free energy of solvation -69.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds