Wall clock time and date at job start Mon Mar 30 2020 01:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38606 * 120.32277 * 2 1 4 4 N 1.31495 * 120.89952 * 180.02562 * 3 2 1 5 5 C 1.32743 * 121.64603 * 359.97438 * 4 3 2 6 6 C 1.48163 * 119.72737 * 179.97438 * 5 4 3 7 7 O 1.21515 * 120.00349 * 174.48598 * 6 5 4 8 8 N 1.34777 * 120.00041 * 354.48445 * 6 5 4 9 9 C 1.46500 * 120.00480 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47426 * 180.02562 * 9 8 6 11 11 H 1.09009 * 109.47107 * 64.99644 * 10 9 8 12 12 C 1.52998 * 109.47286 * 185.00021 * 10 9 8 13 13 N 1.46502 * 109.47214 * 305.00472 * 10 9 8 14 14 C 1.36932 * 120.00415 * 155.00198 * 13 10 9 15 15 H 1.08002 * 119.99979 * 359.97438 * 14 13 10 16 16 C 1.38813 * 120.00393 * 179.97438 * 14 13 10 17 17 N 1.31620 * 119.99516 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00185 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47354 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47072 * 120.00159 * 18 16 14 21 21 H 1.48506 * 109.46882 * 239.99413 * 18 16 14 22 22 C 1.39272 * 120.55120 * 0.24727 * 5 4 3 23 23 C 1.50705 * 120.46697 * 179.72401 * 22 5 4 24 24 C 1.38578 * 120.32633 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47174 * 89.99397 * 1 2 3 26 26 H 1.08994 * 109.47205 * 209.99952 * 1 2 3 27 27 H 1.09001 * 109.46733 * 329.99945 * 1 2 3 28 28 H 1.08000 * 119.55415 * 0.02909 * 3 2 1 29 29 H 0.97001 * 119.99437 * 0.02562 * 8 6 5 30 30 H 1.09000 * 109.46726 * 59.99940 * 9 8 6 31 31 H 1.09001 * 109.46888 * 299.99898 * 9 8 6 32 32 H 1.08999 * 109.46875 * 59.99859 * 12 10 9 33 33 H 1.09005 * 109.47084 * 180.02562 * 12 10 9 34 34 H 1.09005 * 109.46963 * 299.99836 * 12 10 9 35 35 H 0.96999 * 119.99665 * 334.99430 * 13 10 9 36 36 H 0.97003 * 119.99890 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.46873 * 83.28310 * 23 22 5 38 38 H 1.09007 * 109.47001 * 203.27832 * 23 22 5 39 39 H 1.08991 * 109.47384 * 323.27851 * 23 22 5 40 40 H 1.08004 * 120.75375 * 359.96997 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2097 -0.0005 5 6 4.2295 0.0867 -0.0005 6 6 5.7097 0.1512 -0.0017 7 8 6.3625 -0.8687 0.0994 8 7 6.3323 1.3412 -0.1149 9 6 7.7959 1.4051 -0.1155 10 6 8.2427 2.8618 -0.2546 11 1 7.9299 3.4235 0.6257 12 6 9.7665 2.9180 -0.3805 13 7 7.6319 3.4479 -1.4503 14 6 7.4441 4.8019 -1.5296 15 1 7.7459 5.4379 -0.7104 16 6 6.8658 5.3574 -2.6627 17 7 6.4985 4.5824 -3.6611 18 14 6.6090 7.2045 -2.7705 19 1 7.1027 7.8464 -1.5259 20 1 7.3575 7.7411 -3.9354 21 1 5.1619 7.4942 -2.9360 22 6 3.5923 -1.1517 -0.0052 23 6 4.3978 -2.4254 -0.0115 24 6 2.2067 -1.1962 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6648 2.1306 0.0005 29 1 5.8112 2.1554 -0.1952 30 1 8.1846 0.8240 -0.9517 31 1 8.1778 0.9961 0.8199 32 1 10.0793 2.3563 -1.2607 33 1 10.0849 3.9558 -0.4792 34 1 10.2209 2.4820 0.5092 35 1 7.3606 2.8767 -2.1858 36 1 6.0947 4.9705 -4.4532 37 1 4.6946 -2.6726 1.0078 38 1 3.7936 -3.2354 -0.4205 39 1 5.2875 -2.2897 -0.6262 40 1 1.6844 -2.1415 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317259403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:02 Heat of formation + Delta-G solvation = -0.064586 kcal Electronic energy + Delta-G solvation = -21258.967403 eV Core-core repulsion = 18073.639012 eV Total energy + Delta-G solvation = -3185.328391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68645 -38.78791 -36.31941 -34.06477 -33.57571 -33.08552 -31.74276 -28.79585 -27.99772 -27.43684 -25.54897 -23.75791 -23.44244 -21.52084 -20.30324 -20.05622 -17.86878 -17.17467 -16.85562 -15.42814 -15.35216 -15.00639 -14.73897 -14.48475 -14.17233 -13.72330 -13.50382 -13.18255 -13.09126 -12.93430 -12.71643 -12.46526 -12.32233 -12.15818 -12.04900 -11.88676 -11.75008 -11.31433 -10.85618 -10.71744 -10.30735 -9.95980 -9.84089 -9.67996 -9.63415 -9.22046 -8.94804 -8.91109 -8.47050 -6.99221 -5.76574 -3.06527 0.70119 1.21255 2.95625 3.43032 3.48914 3.50929 3.51500 3.94297 4.30651 4.58559 4.60664 4.68097 4.82594 4.96292 5.10555 5.33759 5.34485 5.48259 5.52649 5.57092 5.62146 5.67794 5.77193 5.80348 5.98257 6.06099 6.08810 6.12388 6.22034 6.30425 6.38187 6.59156 6.65427 6.78965 6.90132 7.08059 7.70756 7.75212 8.09617 8.40530 8.58477 9.52563 10.07616 10.43139 11.45607 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.004995 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.297647 B = 5604.399295 C = 7053.172250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.117 4.117 3 C 0.092 3.908 4 N -0.441 5.441 5 C 0.071 3.929 6 C 0.565 3.435 7 O -0.545 6.545 8 N -0.690 5.690 9 C 0.113 3.887 10 C 0.159 3.841 11 H 0.054 0.946 12 C -0.162 4.162 13 N -0.723 5.723 14 C -0.240 4.240 15 H 0.071 0.929 16 C -0.010 4.010 17 N -0.930 5.930 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.293 1.293 21 H -0.292 1.292 22 C -0.072 4.072 23 C -0.115 4.115 24 C -0.093 4.093 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.161 0.839 29 H 0.421 0.579 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.385 0.615 36 H 0.254 0.746 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 -11.683 8.782 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C -0.069 4.069 4 N -0.150 5.150 5 C -0.067 4.067 6 C 0.350 3.650 7 O -0.425 6.425 8 N -0.340 5.340 9 C -0.011 4.011 10 C 0.049 3.951 11 H 0.072 0.928 12 C -0.222 4.222 13 N -0.365 5.365 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.075 4.075 23 C -0.171 4.171 24 C -0.119 4.119 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.178 0.822 29 H 0.259 0.741 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.466 -11.379 8.880 16.733 hybrid contribution -1.005 0.586 -0.543 1.284 sum -9.472 -10.793 8.337 16.604 Atomic orbital electron populations 1.20759 0.89997 1.03216 1.02862 1.21149 0.97699 0.94167 0.98891 1.22707 0.89382 0.97680 0.97113 1.67607 1.08655 1.30039 1.08737 1.21077 0.94529 0.89074 1.01989 1.17845 0.85733 0.84038 0.77408 1.90680 1.66162 1.33920 1.51708 1.45896 1.08073 1.09448 1.70624 1.21763 0.79248 0.98756 1.01376 1.20511 0.92209 0.90262 0.92144 0.92828 1.22360 0.98036 1.01939 0.99902 1.42465 1.72365 1.05283 1.16427 1.19261 1.33404 0.83505 1.00955 0.91066 1.24732 1.01606 0.97657 0.96670 1.69682 1.47319 1.33637 1.07137 0.86144 0.77388 0.85500 0.77295 1.20570 1.21973 1.21912 1.20919 0.94220 0.96351 0.96025 1.21036 1.00411 0.91855 1.03827 1.21375 0.92975 0.98359 0.99193 0.90546 0.91270 0.90882 0.82221 0.74062 0.91620 0.91640 0.93198 0.92303 0.94196 0.78091 0.93593 0.90570 0.92529 0.88108 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.03 36.01 0.36 -0.43 16 2 C -0.12 -1.27 5.91 -104.36 -0.62 -1.89 16 3 C 0.09 1.21 10.86 -17.56 -0.19 1.02 16 4 N -0.44 -7.32 9.56 -9.80 -0.09 -7.42 16 5 C 0.07 1.19 6.75 -83.01 -0.56 0.63 16 6 C 0.56 10.36 7.75 -12.18 -0.09 10.27 16 7 O -0.55 -10.40 13.31 5.35 0.07 -10.32 16 8 N -0.69 -12.91 5.38 -61.15 -0.33 -13.24 16 9 C 0.11 2.02 5.23 -4.04 -0.02 2.00 16 10 C 0.16 3.11 3.05 -67.93 -0.21 2.90 16 11 H 0.05 1.05 8.08 -51.92 -0.42 0.63 16 12 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 13 N -0.72 -17.62 4.56 -53.42 -0.24 -17.87 16 14 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 18 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C -0.07 -1.01 5.93 -104.09 -0.62 -1.62 16 23 C -0.11 -1.44 8.74 36.01 0.31 -1.12 16 24 C -0.09 -1.05 9.51 -39.31 -0.37 -1.42 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.42 8.45 7.48 -40.82 -0.31 8.15 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.39 10.21 7.80 -40.82 -0.32 9.89 16 36 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 39 H 0.10 1.50 5.85 -51.93 -0.30 1.20 16 40 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 338.11 15.07 5.10 5.10 Total: -1.00 -31.29 338.11 -7.65 -38.94 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -5.96 Total: 13.98 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.90 Total: 0.79 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: 0.06 Total: -65.66 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.29 -7.65 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317259403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.876 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds