Wall clock time and date at job start Mon Mar 30 2020 01:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38606 * 120.32277 * 2 1 4 4 N 1.31495 * 120.89952 * 180.02562 * 3 2 1 5 5 C 1.32743 * 121.64603 * 359.97438 * 4 3 2 6 6 C 1.48163 * 119.72737 * 179.97438 * 5 4 3 7 7 O 1.21515 * 120.00349 * 174.48598 * 6 5 4 8 8 N 1.34777 * 120.00041 * 354.48445 * 6 5 4 9 9 C 1.46500 * 120.00480 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47426 * 180.02562 * 9 8 6 11 11 H 1.09009 * 109.47107 * 64.99644 * 10 9 8 12 12 C 1.52998 * 109.47286 * 185.00021 * 10 9 8 13 13 N 1.46502 * 109.47214 * 305.00472 * 10 9 8 14 14 C 1.36932 * 120.00415 * 155.00198 * 13 10 9 15 15 H 1.08002 * 119.99979 * 359.97438 * 14 13 10 16 16 C 1.38813 * 120.00393 * 179.97438 * 14 13 10 17 17 N 1.31620 * 119.99516 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00185 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47354 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47072 * 120.00159 * 18 16 14 21 21 H 1.48506 * 109.46882 * 239.99413 * 18 16 14 22 22 C 1.39272 * 120.55120 * 0.24727 * 5 4 3 23 23 C 1.50705 * 120.46697 * 179.72401 * 22 5 4 24 24 C 1.38578 * 120.32633 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47174 * 89.99397 * 1 2 3 26 26 H 1.08994 * 109.47205 * 209.99952 * 1 2 3 27 27 H 1.09001 * 109.46733 * 329.99945 * 1 2 3 28 28 H 1.08000 * 119.55415 * 0.02909 * 3 2 1 29 29 H 0.97001 * 119.99437 * 0.02562 * 8 6 5 30 30 H 1.09000 * 109.46726 * 59.99940 * 9 8 6 31 31 H 1.09001 * 109.46888 * 299.99898 * 9 8 6 32 32 H 1.08999 * 109.46875 * 59.99859 * 12 10 9 33 33 H 1.09005 * 109.47084 * 180.02562 * 12 10 9 34 34 H 1.09005 * 109.46963 * 299.99836 * 12 10 9 35 35 H 0.96999 * 119.99665 * 334.99430 * 13 10 9 36 36 H 0.97003 * 119.99890 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.46873 * 83.28310 * 23 22 5 38 38 H 1.09007 * 109.47001 * 203.27832 * 23 22 5 39 39 H 1.08991 * 109.47384 * 323.27851 * 23 22 5 40 40 H 1.08004 * 120.75375 * 359.96997 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2097 -0.0005 5 6 4.2295 0.0867 -0.0005 6 6 5.7097 0.1512 -0.0017 7 8 6.3625 -0.8687 0.0994 8 7 6.3323 1.3412 -0.1149 9 6 7.7959 1.4051 -0.1155 10 6 8.2427 2.8618 -0.2546 11 1 7.9299 3.4235 0.6257 12 6 9.7665 2.9180 -0.3805 13 7 7.6319 3.4479 -1.4503 14 6 7.4441 4.8019 -1.5296 15 1 7.7459 5.4379 -0.7104 16 6 6.8658 5.3574 -2.6627 17 7 6.4985 4.5824 -3.6611 18 14 6.6090 7.2045 -2.7705 19 1 7.1027 7.8464 -1.5259 20 1 7.3575 7.7411 -3.9354 21 1 5.1619 7.4942 -2.9360 22 6 3.5923 -1.1517 -0.0052 23 6 4.3978 -2.4254 -0.0115 24 6 2.2067 -1.1962 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6648 2.1306 0.0005 29 1 5.8112 2.1554 -0.1952 30 1 8.1846 0.8240 -0.9517 31 1 8.1778 0.9961 0.8199 32 1 10.0793 2.3563 -1.2607 33 1 10.0849 3.9558 -0.4792 34 1 10.2209 2.4820 0.5092 35 1 7.3606 2.8767 -2.1858 36 1 6.0947 4.9705 -4.4532 37 1 4.6946 -2.6726 1.0078 38 1 3.7936 -3.2354 -0.4205 39 1 5.2875 -2.2897 -0.6262 40 1 1.6844 -2.1415 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317259403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:01 Heat of formation + Delta-G solvation = -21.253436 kcal Electronic energy + Delta-G solvation = -21259.886221 eV Core-core repulsion = 18073.639012 eV Total energy + Delta-G solvation = -3186.247209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80345 -40.09305 -37.95299 -35.45515 -34.65610 -34.34860 -33.49676 -30.63128 -29.07344 -28.33545 -26.89485 -25.64897 -24.60901 -22.57339 -21.72927 -21.47165 -19.47954 -18.84684 -17.98596 -16.97815 -16.78042 -16.36009 -16.12374 -15.71446 -15.47756 -15.07194 -15.00369 -14.49520 -14.07694 -14.02263 -13.85178 -13.67451 -13.50462 -13.39764 -13.23795 -13.14305 -13.04997 -12.80831 -12.66947 -12.47887 -12.13850 -11.72242 -11.65281 -11.06001 -10.97655 -10.57959 -10.37892 -10.14016 -9.72763 -9.02702 -7.91457 -5.20683 -0.35870 0.23970 1.48867 1.48975 1.58933 1.70616 2.18995 2.57729 2.81906 3.20482 3.43257 3.71584 3.76947 3.86933 3.93401 3.95947 3.98489 4.24256 4.38008 4.50770 4.60858 4.64618 4.72069 4.79386 4.81895 4.85979 4.89283 5.05841 5.09696 5.18654 5.24363 5.24761 5.31444 5.45532 5.55617 5.60229 5.71574 6.28938 6.46354 6.83886 7.16641 7.35862 8.08055 8.32636 9.31915 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.004995 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.297647 B = 5604.399295 C = 7053.172250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.073 3.927 4 N -0.476 5.476 5 C 0.032 3.968 6 C 0.559 3.441 7 O -0.560 6.560 8 N -0.698 5.698 9 C 0.121 3.879 10 C 0.158 3.842 11 H 0.056 0.944 12 C -0.153 4.153 13 N -0.732 5.732 14 C -0.234 4.234 15 H 0.078 0.922 16 C -0.072 4.072 17 N -0.969 5.969 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.297 1.297 21 H -0.296 1.296 22 C -0.077 4.077 23 C -0.109 4.109 24 C -0.090 4.090 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.177 0.823 29 H 0.413 0.587 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.371 0.629 36 H 0.248 0.752 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.051 -12.381 10.030 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.088 4.088 4 N -0.186 5.186 5 C -0.105 4.105 6 C 0.346 3.654 7 O -0.441 6.441 8 N -0.347 5.347 9 C -0.003 4.003 10 C 0.049 3.951 11 H 0.074 0.926 12 C -0.213 4.213 13 N -0.373 5.373 14 C -0.365 4.365 15 H 0.096 0.904 16 C -0.265 4.265 17 N -0.620 5.620 18 Si 0.799 3.201 19 H -0.190 1.190 20 H -0.225 1.225 21 H -0.223 1.223 22 C -0.081 4.081 23 C -0.166 4.166 24 C -0.115 4.115 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.194 0.806 29 H 0.250 0.750 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.203 0.797 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.043 -12.090 10.182 18.727 hybrid contribution -0.575 0.734 -0.857 1.267 sum -10.618 -11.356 9.325 18.129 Atomic orbital electron populations 1.20876 0.86770 1.04937 1.04006 1.21579 0.99800 0.93058 0.95762 1.23183 0.88610 0.99694 0.97307 1.67488 1.10439 1.30688 1.10030 1.20937 0.93536 0.90471 1.05509 1.18253 0.86933 0.83526 0.76705 1.90658 1.66924 1.34062 1.52435 1.45941 1.08171 1.09394 1.71207 1.21683 0.79220 0.97439 1.01947 1.20699 0.93217 0.90937 0.90204 0.92617 1.22214 0.96259 1.01370 1.01438 1.42601 1.72840 1.04452 1.17419 1.19624 1.31528 0.84772 1.00616 0.90395 1.25488 1.02537 1.01693 0.96750 1.69844 1.49162 1.35264 1.07708 0.85129 0.76737 0.80794 0.77423 1.18967 1.22481 1.22303 1.21171 0.95732 0.95624 0.95536 1.20970 0.99739 0.92378 1.03496 1.21821 0.91778 1.00189 0.97748 0.89399 0.89091 0.89725 0.80573 0.75041 0.92585 0.89596 0.93730 0.93557 0.90592 0.79710 0.94284 0.90464 0.89312 0.90917 0.80584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.03 71.24 0.71 -0.41 16 2 C -0.10 -1.92 5.91 -19.69 -0.12 -2.04 16 3 C 0.07 1.88 10.86 84.83 0.92 2.80 16 4 N -0.48 -16.18 9.56 -184.91 -1.77 -17.95 16 5 C 0.03 1.09 6.75 41.89 0.28 1.38 16 6 C 0.56 21.29 7.75 86.88 0.67 21.97 16 7 O -0.56 -22.01 13.31 -3.76 -0.05 -22.06 16 8 N -0.70 -27.04 5.38 -465.67 -2.50 -29.55 16 9 C 0.12 4.38 5.23 86.38 0.45 4.83 16 10 C 0.16 6.16 3.05 44.99 0.14 6.30 16 11 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 12 C -0.15 -5.24 9.49 71.98 0.68 -4.56 16 13 N -0.73 -36.38 4.56 -322.94 -1.47 -37.85 16 14 C -0.23 -12.73 9.93 84.03 0.83 -11.89 16 15 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 16 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 17 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 18 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 22 C -0.08 -2.10 5.93 -19.52 -0.12 -2.21 16 23 C -0.11 -2.64 8.74 71.24 0.62 -2.02 16 24 C -0.09 -1.77 9.51 22.44 0.21 -1.56 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 27 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 28 H 0.18 3.67 8.06 -2.91 -0.02 3.64 16 29 H 0.41 17.35 7.48 -92.71 -0.69 16.66 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.37 20.39 7.80 -92.71 -0.72 19.67 16 36 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 1.52 8.06 -2.38 -0.02 1.50 16 39 H 0.07 2.20 5.85 -2.39 -0.01 2.19 16 40 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -69.69 338.11 1.92 -67.77 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.36 Total: 41.86 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.77 Total: 8.91 kcal Atomic # 7 Polarization: -139.20 SS G_CDS: -5.46 Total: -144.67 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -69.69 1.92 -67.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317259403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.518 kcal (2) G-P(sol) polarization free energy of solvation -69.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds