Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38225 * 120.42132 * 2 1 4 4 N 1.31862 * 120.76271 * 180.02562 * 3 2 1 5 5 C 1.31880 * 121.72594 * 359.70039 * 4 3 2 6 6 C 1.38182 * 120.76435 * 0.58887 * 5 4 3 7 7 C 1.50703 * 120.41723 * 179.69965 * 6 5 4 8 8 C 1.50698 * 109.47424 * 269.72219 * 7 6 5 9 9 O 1.21284 * 119.99706 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00360 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00064 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46887 * 179.97438 * 11 10 8 13 13 N 1.46501 * 109.46850 * 179.97438 * 12 11 10 14 14 C 1.46499 * 119.99900 * 89.99782 * 13 12 11 15 15 C 1.36937 * 119.99990 * 270.00066 * 13 12 11 16 16 H 1.08001 * 120.00003 * 23.04397 * 15 13 12 17 17 C 1.38813 * 119.99866 * 203.05044 * 15 13 12 18 18 N 1.31621 * 119.99910 * 12.93050 * 17 15 13 19 19 Si 1.86795 * 119.99915 * 192.93580 * 17 15 13 20 20 H 1.48504 * 109.47388 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47229 * 119.99475 * 19 17 15 22 22 H 1.48502 * 109.47087 * 239.99627 * 19 17 15 23 23 C 1.38629 * 120.41991 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47174 * 269.97939 * 1 2 3 25 25 H 1.09003 * 109.47106 * 29.97826 * 1 2 3 26 26 H 1.09006 * 109.47545 * 149.98096 * 1 2 3 27 27 H 1.08000 * 119.61680 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.61961 * 180.30824 * 5 4 3 29 29 H 1.08994 * 109.47264 * 29.72372 * 7 6 5 30 30 H 1.09003 * 109.46999 * 149.72333 * 7 6 5 31 31 H 0.96996 * 119.99895 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.46590 * 299.99376 * 11 10 8 33 33 H 1.08995 * 109.47745 * 59.99245 * 11 10 8 34 34 H 1.08993 * 109.46694 * 299.99542 * 12 11 10 35 35 H 1.08996 * 109.47251 * 59.99911 * 12 11 10 36 36 H 1.08998 * 109.47252 * 95.12248 * 14 13 12 37 37 H 1.09002 * 109.46901 * 215.11925 * 14 13 12 38 38 H 1.08995 * 109.47383 * 335.11972 * 14 13 12 39 39 H 0.97003 * 119.99828 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.78979 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2256 0.0822 0.0048 6 6 3.5947 -1.1471 -0.0010 7 6 4.4026 -2.4193 -0.0016 8 6 4.6713 -2.8431 -1.4226 9 8 4.2489 -2.1773 -2.3441 10 7 5.3811 -3.9619 -1.6695 11 6 5.6428 -4.3735 -3.0509 12 6 6.4629 -5.6652 -3.0515 13 7 6.7241 -6.0771 -4.4329 14 6 7.9258 -5.6030 -5.1239 15 6 5.8450 -6.9053 -5.0783 16 1 4.8171 -6.9615 -4.7517 17 6 6.2751 -7.6726 -6.1521 18 7 7.5623 -7.8044 -6.3931 19 14 5.0270 -8.5180 -7.2552 20 1 3.6552 -8.2147 -6.7739 21 1 5.1835 -8.0260 -8.6476 22 1 5.2500 -9.9858 -7.2208 23 6 2.2089 -1.1955 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6675 2.1276 -0.0004 28 1 5.3046 0.1284 0.0093 29 1 5.3488 -2.2491 0.5118 30 1 3.8462 -3.2033 0.5122 31 1 5.7193 -4.4942 -0.9325 32 1 4.6966 -4.5432 -3.5648 33 1 6.1997 -3.5897 -3.5643 34 1 7.4090 -5.4950 -2.5377 35 1 5.9064 -6.4492 -2.5380 36 1 8.7166 -6.3470 -5.0294 37 1 7.6999 -5.4448 -6.1784 38 1 8.2548 -4.6644 -4.6780 39 1 7.8629 -8.3403 -7.1437 40 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317454324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = 11.155050 kcal Electronic energy + Delta-G solvation = -20484.493248 eV Core-core repulsion = 17299.651377 eV Total energy + Delta-G solvation = -3184.841871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59576 -39.22465 -36.11412 -34.19612 -33.78669 -33.67669 -31.37756 -29.08969 -27.55581 -27.27627 -25.86415 -23.66514 -23.10529 -21.65551 -20.71060 -19.99155 -17.19681 -17.01254 -16.85946 -16.59910 -15.87207 -15.16084 -14.86427 -14.45789 -14.31566 -13.85960 -13.56224 -13.43484 -13.26034 -13.19623 -12.84703 -12.78375 -12.62228 -12.37249 -12.13665 -11.60316 -11.19869 -10.91858 -10.88555 -10.61494 -10.36508 -10.01062 -9.95748 -9.90384 -9.61827 -9.57377 -8.93964 -8.74811 -8.58705 -6.82041 -5.76489 -3.24771 0.93588 1.14656 2.77197 3.30951 3.36707 3.44061 3.46335 3.74421 4.22991 4.47713 4.48564 4.54055 4.79773 4.82291 4.87782 4.99075 5.12309 5.25893 5.29922 5.37464 5.48653 5.59923 5.61348 5.75358 5.78854 5.88754 6.02326 6.08732 6.22836 6.55134 6.57576 6.62167 6.74111 6.86311 7.34509 7.68669 7.70662 7.77982 7.84003 8.34247 8.41200 9.18836 9.81270 10.29261 11.28333 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028505 B = 0.002981 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.048561 B = 9391.753813 C = 9956.881496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.138 4.138 3 C 0.093 3.907 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.108 4.108 7 C -0.100 4.100 8 C 0.507 3.493 9 O -0.537 6.537 10 N -0.724 5.724 11 C 0.094 3.906 12 C 0.144 3.856 13 N -0.598 5.598 14 C 0.161 3.839 15 C -0.260 4.260 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.906 5.906 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.290 1.290 23 C -0.064 4.064 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.152 0.848 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.033 0.967 37 H 0.042 0.958 38 H -0.001 1.001 39 H 0.253 0.747 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 12.392 17.187 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C -0.064 4.064 4 N -0.189 5.189 5 C -0.051 4.051 6 C -0.110 4.110 7 C -0.141 4.141 8 C 0.292 3.708 9 O -0.413 6.413 10 N -0.375 5.375 11 C -0.032 4.032 12 C 0.016 3.984 13 N -0.321 5.321 14 C 0.016 3.984 15 C -0.389 4.389 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.551 5.551 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.217 1.217 23 C -0.090 4.090 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.063 0.937 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.507 13.563 16.322 22.863 hybrid contribution -0.834 -1.620 -0.440 1.874 sum -9.341 11.944 15.882 21.958 Atomic orbital electron populations 1.20715 0.90227 1.03287 1.02421 1.20892 0.97563 0.94098 1.01446 1.22630 0.90007 0.97381 0.96414 1.67660 1.08360 1.31092 1.11752 1.22562 1.00153 0.87105 0.95308 1.20305 0.94290 0.95535 1.00895 1.20630 1.01739 0.95958 0.95745 1.20416 0.78581 0.81053 0.90726 1.90742 1.50819 1.53498 1.46275 1.46090 1.55181 1.26035 1.10222 1.22433 1.01294 0.99111 0.80319 1.20835 0.96492 0.92898 0.88222 1.43796 1.25324 1.54553 1.08381 1.20840 0.88629 0.93188 0.95738 1.19231 0.90769 1.17045 1.11864 0.91309 1.25036 0.95842 0.98096 1.00536 1.70083 1.12344 1.42294 1.30344 0.86170 0.80725 0.78905 0.80652 1.20254 1.21505 1.21666 1.21335 0.93310 0.98308 0.96004 0.90982 0.91155 0.91244 0.83025 0.83036 0.87609 0.87791 0.76946 0.91644 0.92283 0.94078 0.92960 0.94831 0.93939 0.98249 0.93715 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.04 36.00 0.36 -0.40 16 2 C -0.14 -1.39 5.90 -104.49 -0.62 -2.00 16 3 C 0.09 1.01 10.86 -17.54 -0.19 0.82 16 4 N -0.48 -6.20 10.36 -13.25 -0.14 -6.34 16 5 C 0.11 1.27 10.86 -17.55 -0.19 1.08 16 6 C -0.11 -1.21 4.39 -104.48 -0.46 -1.67 16 7 C -0.10 -0.92 5.86 -29.03 -0.17 -1.09 16 8 C 0.51 7.13 7.82 -10.99 -0.09 7.04 16 9 O -0.54 -10.24 16.03 5.55 0.09 -10.15 16 10 N -0.72 -9.77 5.56 -60.29 -0.33 -10.10 16 11 C 0.09 1.70 6.00 -4.04 -0.02 1.67 16 12 C 0.14 2.79 5.76 -4.04 -0.02 2.77 16 13 N -0.60 -14.92 2.92 -181.12 -0.53 -15.45 16 14 C 0.16 3.96 8.98 59.85 0.54 4.50 16 15 C -0.26 -7.12 9.65 -15.06 -0.15 -7.27 16 16 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 17 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 18 N -0.91 -26.38 10.71 55.49 0.59 -25.78 16 19 Si 0.91 21.89 29.57 -169.99 -5.03 16.87 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C -0.06 -0.68 9.55 -39.28 -0.37 -1.06 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 26 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.11 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.40 3.94 8.47 -40.82 -0.35 3.59 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 36 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 37 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 38 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -34.59 341.69 -7.79 -42.38 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.13 Total: -0.97 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.47 Total: 4.40 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.41 Total: -57.68 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.59 -7.79 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317454324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.539 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds