Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38225 * 120.42132 * 2 1 4 4 N 1.31862 * 120.76271 * 180.02562 * 3 2 1 5 5 C 1.31880 * 121.72594 * 359.70039 * 4 3 2 6 6 C 1.38182 * 120.76435 * 0.58887 * 5 4 3 7 7 C 1.50703 * 120.41723 * 179.69965 * 6 5 4 8 8 C 1.50698 * 109.47424 * 269.72219 * 7 6 5 9 9 O 1.21284 * 119.99706 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00360 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00064 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46887 * 179.97438 * 11 10 8 13 13 N 1.46501 * 109.46850 * 179.97438 * 12 11 10 14 14 C 1.46499 * 119.99900 * 89.99782 * 13 12 11 15 15 C 1.36937 * 119.99990 * 270.00066 * 13 12 11 16 16 H 1.08001 * 120.00003 * 23.04397 * 15 13 12 17 17 C 1.38813 * 119.99866 * 203.05044 * 15 13 12 18 18 N 1.31621 * 119.99910 * 12.93050 * 17 15 13 19 19 Si 1.86795 * 119.99915 * 192.93580 * 17 15 13 20 20 H 1.48504 * 109.47388 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47229 * 119.99475 * 19 17 15 22 22 H 1.48502 * 109.47087 * 239.99627 * 19 17 15 23 23 C 1.38629 * 120.41991 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47174 * 269.97939 * 1 2 3 25 25 H 1.09003 * 109.47106 * 29.97826 * 1 2 3 26 26 H 1.09006 * 109.47545 * 149.98096 * 1 2 3 27 27 H 1.08000 * 119.61680 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.61961 * 180.30824 * 5 4 3 29 29 H 1.08994 * 109.47264 * 29.72372 * 7 6 5 30 30 H 1.09003 * 109.46999 * 149.72333 * 7 6 5 31 31 H 0.96996 * 119.99895 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.46590 * 299.99376 * 11 10 8 33 33 H 1.08995 * 109.47745 * 59.99245 * 11 10 8 34 34 H 1.08993 * 109.46694 * 299.99542 * 12 11 10 35 35 H 1.08996 * 109.47251 * 59.99911 * 12 11 10 36 36 H 1.08998 * 109.47252 * 95.12248 * 14 13 12 37 37 H 1.09002 * 109.46901 * 215.11925 * 14 13 12 38 38 H 1.08995 * 109.47383 * 335.11972 * 14 13 12 39 39 H 0.97003 * 119.99828 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.78979 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2256 0.0822 0.0048 6 6 3.5947 -1.1471 -0.0010 7 6 4.4026 -2.4193 -0.0016 8 6 4.6713 -2.8431 -1.4226 9 8 4.2489 -2.1773 -2.3441 10 7 5.3811 -3.9619 -1.6695 11 6 5.6428 -4.3735 -3.0509 12 6 6.4629 -5.6652 -3.0515 13 7 6.7241 -6.0771 -4.4329 14 6 7.9258 -5.6030 -5.1239 15 6 5.8450 -6.9053 -5.0783 16 1 4.8171 -6.9615 -4.7517 17 6 6.2751 -7.6726 -6.1521 18 7 7.5623 -7.8044 -6.3931 19 14 5.0270 -8.5180 -7.2552 20 1 3.6552 -8.2147 -6.7739 21 1 5.1835 -8.0260 -8.6476 22 1 5.2500 -9.9858 -7.2208 23 6 2.2089 -1.1955 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6675 2.1276 -0.0004 28 1 5.3046 0.1284 0.0093 29 1 5.3488 -2.2491 0.5118 30 1 3.8462 -3.2033 0.5122 31 1 5.7193 -4.4942 -0.9325 32 1 4.6966 -4.5432 -3.5648 33 1 6.1997 -3.5897 -3.5643 34 1 7.4090 -5.4950 -2.5377 35 1 5.9064 -6.4492 -2.5380 36 1 8.7166 -6.3470 -5.0294 37 1 7.6999 -5.4448 -6.1784 38 1 8.2548 -4.6644 -4.6780 39 1 7.8629 -8.3403 -7.1437 40 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317454324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -12.509886 kcal Electronic energy + Delta-G solvation = -20485.519437 eV Core-core repulsion = 17299.651377 eV Total energy + Delta-G solvation = -3185.868060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45571 -40.34619 -37.86361 -35.69821 -34.57519 -34.48301 -33.28038 -30.40616 -28.56599 -28.14803 -27.89923 -25.12560 -24.11732 -22.64378 -22.34129 -21.13560 -18.80198 -18.05700 -17.86049 -17.67062 -17.20031 -16.64536 -16.42623 -15.52639 -15.36166 -15.27012 -14.98710 -14.66394 -14.37102 -14.16023 -14.10810 -13.96620 -13.51854 -13.27928 -13.14918 -12.99246 -12.81483 -12.66664 -12.51608 -12.29810 -12.15989 -11.97748 -11.78444 -11.10133 -10.69158 -10.49710 -10.40816 -10.04763 -9.72687 -8.84621 -7.86318 -5.36701 0.13506 0.34323 1.44493 1.46919 1.56718 1.68209 2.21100 2.51699 2.88252 3.27970 3.48044 3.71376 3.76160 3.85585 4.04035 4.07862 4.08636 4.22975 4.26876 4.34507 4.47444 4.64418 4.67550 4.79279 4.80900 4.83048 4.92079 5.05759 5.13712 5.19321 5.26397 5.31561 5.33950 5.51787 5.61211 5.68310 5.80685 6.29889 6.64212 7.02458 7.11443 7.33716 7.82274 8.24932 9.16981 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028505 B = 0.002981 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.048561 B = 9391.753813 C = 9956.881496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.141 4.141 3 C 0.077 3.923 4 N -0.510 5.510 5 C 0.084 3.916 6 C -0.119 4.119 7 C -0.086 4.086 8 C 0.507 3.493 9 O -0.592 6.592 10 N -0.710 5.710 11 C 0.116 3.884 12 C 0.147 3.853 13 N -0.618 5.618 14 C 0.173 3.827 15 C -0.267 4.267 16 H 0.070 0.930 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.288 1.288 23 C -0.079 4.079 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.173 0.827 28 H 0.162 0.838 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.419 0.581 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.031 0.969 39 H 0.249 0.751 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.928 12.298 19.155 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C -0.079 4.079 4 N -0.218 5.218 5 C -0.072 4.072 6 C -0.121 4.121 7 C -0.126 4.126 8 C 0.294 3.706 9 O -0.472 6.472 10 N -0.363 5.363 11 C -0.012 4.012 12 C 0.020 3.980 13 N -0.341 5.341 14 C 0.028 3.972 15 C -0.397 4.397 16 H 0.088 0.912 17 C -0.247 4.247 18 N -0.583 5.583 19 Si 0.796 3.204 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.215 1.215 23 C -0.104 4.104 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.190 0.810 28 H 0.179 0.821 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.256 0.744 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.675 13.465 18.366 24.743 hybrid contribution -0.505 -1.512 -0.985 1.874 sum -10.180 11.953 17.381 23.423 Atomic orbital electron populations 1.20772 0.88069 1.03865 1.03682 1.21255 0.99203 0.93658 1.00183 1.23066 0.89728 0.98792 0.96349 1.67639 1.09496 1.31925 1.12768 1.22849 1.00868 0.87500 0.95998 1.20532 0.94846 0.95975 1.00757 1.20662 1.03677 0.95885 0.92383 1.21255 0.77051 0.79993 0.92254 1.90728 1.52902 1.55104 1.48484 1.45841 1.55120 1.26386 1.08955 1.21815 0.99063 0.97756 0.82528 1.20964 0.97978 0.93340 0.85694 1.44046 1.24947 1.54520 1.10602 1.20592 0.88175 0.93927 0.94462 1.19533 0.91329 1.16689 1.12118 0.91191 1.25791 0.97480 0.99367 1.02038 1.70227 1.13902 1.43354 1.30784 0.85200 0.79036 0.77724 0.78451 1.19229 1.21957 1.21457 1.21698 0.93539 0.99316 0.95889 0.89257 0.90188 0.91055 0.81029 0.82093 0.84285 0.84453 0.74393 0.94687 0.94221 0.91535 0.92079 0.96950 0.96939 0.95056 0.94156 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.04 71.23 0.72 -0.54 16 2 C -0.14 -2.63 5.90 -19.78 -0.12 -2.75 16 3 C 0.08 1.62 10.86 84.69 0.92 2.54 16 4 N -0.51 -12.99 10.36 -195.84 -2.03 -15.02 16 5 C 0.08 1.96 10.86 84.67 0.92 2.88 16 6 C -0.12 -2.46 4.39 -19.77 -0.09 -2.55 16 7 C -0.09 -1.31 5.86 29.10 0.17 -1.14 16 8 C 0.51 13.26 7.82 87.66 0.69 13.95 16 9 O -0.59 -22.39 16.03 -3.04 -0.05 -22.44 16 10 N -0.71 -17.48 5.56 -463.05 -2.57 -20.05 16 11 C 0.12 4.05 6.00 86.38 0.52 4.57 16 12 C 0.15 5.45 5.76 86.38 0.50 5.95 16 13 N -0.62 -30.61 2.92 -726.95 -2.12 -32.74 16 14 C 0.17 8.59 8.98 127.77 1.15 9.73 16 15 C -0.27 -14.60 9.65 84.03 0.81 -13.79 16 16 H 0.07 3.73 7.86 -2.91 -0.02 3.71 16 17 C -0.05 -2.89 5.10 84.86 0.43 -2.46 16 18 N -0.94 -55.33 10.71 21.65 0.23 -55.10 16 19 Si 0.97 45.25 29.57 68.60 2.03 47.28 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 23 C -0.08 -1.55 9.55 22.47 0.21 -1.34 16 24 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 26 H 0.07 0.83 8.10 -2.38 -0.02 0.81 16 27 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.14 1.24 8.09 -2.39 -0.02 1.22 16 30 H 0.14 1.23 8.10 -2.39 -0.02 1.21 16 31 H 0.42 6.77 8.47 -92.71 -0.79 5.98 16 32 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 35 H 0.06 2.17 8.04 -2.39 -0.02 2.15 16 36 H 0.01 0.65 7.34 -2.39 -0.02 0.64 16 37 H 0.01 0.65 7.34 -2.39 -0.02 0.63 16 38 H 0.03 1.31 8.03 -2.39 -0.02 1.29 16 39 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -76.75 341.69 2.56 -74.19 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.24 Total: 8.83 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 6.83 Total: 15.05 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -6.49 Total: -122.91 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.75 2.56 -74.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317454324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.685 kcal (2) G-P(sol) polarization free energy of solvation -76.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds