Wall clock time and date at job start Mon Mar 30 2020 01:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38627 * 120.32755 * 2 1 4 4 C 1.38584 * 118.49060 * 179.72591 * 3 2 1 5 5 C 1.39310 * 119.05751 * 0.49786 * 4 3 2 6 6 C 1.48178 * 119.72127 * 179.77201 * 5 4 3 7 7 O 1.21512 * 119.99737 * 6.33758 * 6 5 4 8 8 N 1.34770 * 119.99594 * 186.33598 * 6 5 4 9 9 C 1.46501 * 120.00520 * 5.70061 * 8 6 5 10 10 C 1.46500 * 119.99705 * 185.42897 * 8 6 5 11 11 C 1.52999 * 109.46909 * 270.27315 * 10 8 6 12 12 N 1.46501 * 109.47293 * 180.02562 * 11 10 8 13 13 C 1.36939 * 120.00422 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99916 * 0.02562 * 13 12 11 15 15 C 1.38809 * 119.99931 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00503 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99808 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46908 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47027 * 120.00057 * 17 15 13 20 20 H 1.48499 * 109.47219 * 239.99975 * 17 15 13 21 21 N 1.32712 * 120.55549 * 359.48952 * 5 4 3 22 22 C 1.31524 * 121.64317 * 0.26311 * 21 5 4 23 23 C 1.50695 * 119.55176 * 179.97438 * 22 21 5 24 24 H 1.09001 * 109.47493 * 270.02013 * 1 2 3 25 25 H 1.09004 * 109.47218 * 30.02228 * 1 2 3 26 26 H 1.08997 * 109.47349 * 150.02299 * 1 2 3 27 27 H 1.07999 * 120.74998 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.47522 * 180.26144 * 4 3 2 29 29 H 1.08994 * 109.47269 * 275.22704 * 9 8 6 30 30 H 1.09005 * 109.47042 * 35.22673 * 9 8 6 31 31 H 1.09005 * 109.47438 * 155.22103 * 9 8 6 32 32 H 1.08997 * 109.47597 * 30.27451 * 10 8 6 33 33 H 1.09004 * 109.47446 * 150.28028 * 10 8 6 34 34 H 1.09001 * 109.47644 * 299.99951 * 11 10 8 35 35 H 1.09000 * 109.47170 * 60.00347 * 11 10 8 36 36 H 0.97003 * 120.00146 * 359.97438 * 12 11 10 37 37 H 0.96994 * 120.00168 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.47379 * 89.99207 * 23 22 21 39 39 H 1.09001 * 109.47244 * 209.99688 * 23 22 21 40 40 H 1.09001 * 109.46981 * 329.99481 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1521 0.0058 5 6 4.2293 -0.0866 0.0009 6 6 5.7097 -0.1513 0.0019 7 8 6.3621 0.8666 0.1231 8 7 6.3323 -1.3390 -0.1317 9 6 5.5520 -2.5489 -0.4027 10 6 7.7902 -1.4193 -0.0118 11 6 8.4271 -1.2132 -1.3875 12 7 9.8850 -1.2941 -1.2678 13 6 10.6728 -1.1388 -2.3771 14 1 10.2195 -0.9563 -3.3402 15 6 12.0542 -1.2150 -2.2635 16 7 12.6068 -1.4369 -1.0897 17 14 13.1289 -1.0024 -3.7766 18 1 12.2699 -0.7649 -4.9644 19 1 14.0347 0.1581 -3.5813 20 1 13.9364 -2.2308 -3.9867 21 7 3.5217 -1.2094 0.0009 22 6 2.2065 -1.1961 0.0004 23 6 1.4501 -2.4994 -0.0001 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6846 2.1419 -0.0004 28 1 4.1693 2.0649 0.0103 29 1 5.1838 -2.9617 0.5365 30 1 4.7079 -2.3003 -1.0460 31 1 6.1836 -3.2849 -0.9003 32 1 8.1419 -0.6458 0.6709 33 1 8.0696 -2.3995 0.3747 34 1 8.0756 -1.9868 -2.0703 35 1 8.1478 -0.2331 -1.7741 36 1 10.2924 -1.4569 -0.4027 37 1 13.5721 -1.4897 -1.0103 38 1 1.2674 -2.8140 1.0274 39 1 0.4981 -2.3668 -0.5142 40 1 2.0376 -3.2603 -0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317610272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:13 Heat of formation + Delta-G solvation = 24.845036 kcal Electronic energy + Delta-G solvation = -20946.869642 eV Core-core repulsion = 17762.621413 eV Total energy + Delta-G solvation = -3184.248229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99402 -39.15825 -35.91740 -34.57270 -33.94215 -33.25354 -31.30507 -28.91273 -28.33188 -27.44783 -26.15844 -24.00297 -23.04384 -22.25452 -21.28321 -19.66854 -17.58008 -17.05850 -16.75657 -15.73375 -15.66767 -15.41086 -14.84704 -14.57359 -14.37328 -13.66804 -13.59195 -13.34949 -13.29462 -13.24310 -13.07095 -12.75131 -12.69191 -12.51291 -12.43955 -12.03237 -11.68166 -11.19265 -10.94596 -10.83949 -10.63307 -10.16915 -10.02692 -9.98752 -9.70164 -9.32197 -9.05996 -8.82164 -8.36923 -6.87177 -5.70940 -2.99807 0.47045 0.96306 2.72939 3.08415 3.47914 3.53241 3.55903 3.67406 3.87011 4.32759 4.46517 4.51733 4.60276 4.67197 4.95034 5.07552 5.22723 5.26385 5.28513 5.33948 5.44630 5.50364 5.56192 5.67228 5.70631 5.73289 5.84059 5.92421 5.97114 6.08849 6.11938 6.20912 6.39406 6.66697 6.81602 6.99737 7.48060 7.62435 7.76252 8.28710 8.47782 9.58591 10.15195 10.50608 11.52205 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037850 B = 0.003120 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.586767 B = 8970.955581 C = 9207.280148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.113 4.113 5 C 0.084 3.916 6 C 0.562 3.438 7 O -0.527 6.527 8 N -0.591 5.591 9 C 0.091 3.909 10 C 0.107 3.893 11 C 0.143 3.857 12 N -0.731 5.731 13 C -0.235 4.235 14 H 0.071 0.929 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 N -0.447 5.447 22 C 0.117 3.883 23 C -0.106 4.106 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.140 0.860 28 H 0.148 0.852 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.019 0.981 35 H 0.024 0.976 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.729 -0.621 4.186 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.134 4.134 5 C -0.054 4.054 6 C 0.348 3.652 7 O -0.403 6.403 8 N -0.322 5.322 9 C -0.052 4.052 10 C -0.015 4.015 11 C 0.014 3.986 12 N -0.375 5.375 13 C -0.366 4.366 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.583 5.583 17 Si 0.740 3.260 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.219 1.219 21 N -0.159 5.159 22 C -0.023 4.023 23 C -0.163 4.163 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.158 0.842 28 H 0.166 0.834 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.037 0.963 35 H 0.042 0.958 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -27.833 -0.863 4.078 28.144 hybrid contribution 0.406 0.863 -0.524 1.088 sum -27.427 -0.001 3.554 27.657 Atomic orbital electron populations 1.20857 0.90039 1.03442 1.02843 1.20931 0.97656 0.93651 1.00035 1.21491 0.93597 0.98380 0.97295 1.22118 0.94857 0.99139 0.97298 1.21202 0.94347 0.89553 1.00271 1.17925 0.85659 0.83774 0.77819 1.90820 1.65682 1.33801 1.50005 1.47671 1.07793 1.07813 1.68949 1.22080 0.95683 0.85883 1.01519 1.21784 0.77178 1.02892 0.99670 1.20913 0.85883 0.98263 0.93522 1.42225 0.99075 1.87173 1.09064 1.19264 0.88228 1.40782 0.88368 0.91151 1.24749 0.96589 1.02915 0.96871 1.69672 1.09946 1.56659 1.22024 0.86089 0.80588 0.77249 0.82119 1.20561 1.21837 1.21865 1.67959 1.07407 1.29711 1.10834 1.21282 0.89588 0.95243 0.96184 1.20789 0.99280 0.92946 1.03285 0.90568 0.91170 0.90559 0.84186 0.83382 0.92473 0.89511 0.91910 0.89761 0.90177 0.96348 0.95789 0.78265 0.93568 0.90235 0.90350 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 9.62 36.00 0.35 -0.19 16 2 C -0.12 -0.98 5.91 -104.36 -0.62 -1.60 16 3 C -0.08 -0.73 9.85 -39.31 -0.39 -1.11 16 4 C -0.11 -1.35 9.63 -39.05 -0.38 -1.73 16 5 C 0.08 1.18 6.56 -83.00 -0.54 0.64 16 6 C 0.56 9.73 7.64 -12.18 -0.09 9.64 16 7 O -0.53 -10.86 15.98 5.36 0.09 -10.77 16 8 N -0.59 -9.71 2.87 -182.57 -0.52 -10.24 16 9 C 0.09 1.18 9.11 59.85 0.55 1.72 16 10 C 0.11 2.00 5.45 -4.04 -0.02 1.98 16 11 C 0.14 3.21 6.58 -4.04 -0.03 3.18 16 12 N -0.73 -19.83 5.60 -59.91 -0.34 -20.16 16 13 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 14 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 15 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 16 N -0.93 -29.22 13.06 55.49 0.72 -28.49 16 17 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 N -0.45 -5.42 6.09 -6.06 -0.04 -5.45 16 22 C 0.12 1.10 6.78 -82.61 -0.56 0.54 16 23 C -0.11 -0.64 9.77 36.00 0.35 -0.29 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 26 H 0.08 0.27 5.95 -51.93 -0.31 -0.04 16 27 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.15 1.75 7.66 -52.49 -0.40 1.35 16 29 H 0.06 0.67 7.99 -51.93 -0.42 0.26 16 30 H 0.09 1.09 5.79 -51.93 -0.30 0.79 16 31 H 0.06 0.78 8.03 -51.93 -0.42 0.36 16 32 H 0.08 1.70 7.51 -51.93 -0.39 1.31 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.38 10.74 7.67 -40.82 -0.31 10.43 16 37 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.32 5.93 -51.93 -0.31 0.01 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -35.21 334.48 -7.48 -42.69 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.78 Total: 4.09 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.63 Total: 5.12 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.17 Total: -64.35 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.21 -7.48 -42.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317610272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.533 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds