Wall clock time and date at job start Mon Mar 30 2020 01:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38627 * 120.32755 * 2 1 4 4 C 1.38584 * 118.49060 * 179.72591 * 3 2 1 5 5 C 1.39310 * 119.05751 * 0.49786 * 4 3 2 6 6 C 1.48178 * 119.72127 * 179.77201 * 5 4 3 7 7 O 1.21512 * 119.99737 * 6.33758 * 6 5 4 8 8 N 1.34770 * 119.99594 * 186.33598 * 6 5 4 9 9 C 1.46501 * 120.00520 * 5.70061 * 8 6 5 10 10 C 1.46500 * 119.99705 * 185.42897 * 8 6 5 11 11 C 1.52999 * 109.46909 * 270.27315 * 10 8 6 12 12 N 1.46501 * 109.47293 * 180.02562 * 11 10 8 13 13 C 1.36939 * 120.00422 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99916 * 0.02562 * 13 12 11 15 15 C 1.38809 * 119.99931 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00503 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99808 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46908 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47027 * 120.00057 * 17 15 13 20 20 H 1.48499 * 109.47219 * 239.99975 * 17 15 13 21 21 N 1.32712 * 120.55549 * 359.48952 * 5 4 3 22 22 C 1.31524 * 121.64317 * 0.26311 * 21 5 4 23 23 C 1.50695 * 119.55176 * 179.97438 * 22 21 5 24 24 H 1.09001 * 109.47493 * 270.02013 * 1 2 3 25 25 H 1.09004 * 109.47218 * 30.02228 * 1 2 3 26 26 H 1.08997 * 109.47349 * 150.02299 * 1 2 3 27 27 H 1.07999 * 120.74998 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.47522 * 180.26144 * 4 3 2 29 29 H 1.08994 * 109.47269 * 275.22704 * 9 8 6 30 30 H 1.09005 * 109.47042 * 35.22673 * 9 8 6 31 31 H 1.09005 * 109.47438 * 155.22103 * 9 8 6 32 32 H 1.08997 * 109.47597 * 30.27451 * 10 8 6 33 33 H 1.09004 * 109.47446 * 150.28028 * 10 8 6 34 34 H 1.09001 * 109.47644 * 299.99951 * 11 10 8 35 35 H 1.09000 * 109.47170 * 60.00347 * 11 10 8 36 36 H 0.97003 * 120.00146 * 359.97438 * 12 11 10 37 37 H 0.96994 * 120.00168 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.47379 * 89.99207 * 23 22 21 39 39 H 1.09001 * 109.47244 * 209.99688 * 23 22 21 40 40 H 1.09001 * 109.46981 * 329.99481 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1521 0.0058 5 6 4.2293 -0.0866 0.0009 6 6 5.7097 -0.1513 0.0019 7 8 6.3621 0.8666 0.1231 8 7 6.3323 -1.3390 -0.1317 9 6 5.5520 -2.5489 -0.4027 10 6 7.7902 -1.4193 -0.0118 11 6 8.4271 -1.2132 -1.3875 12 7 9.8850 -1.2941 -1.2678 13 6 10.6728 -1.1388 -2.3771 14 1 10.2195 -0.9563 -3.3402 15 6 12.0542 -1.2150 -2.2635 16 7 12.6068 -1.4369 -1.0897 17 14 13.1289 -1.0024 -3.7766 18 1 12.2699 -0.7649 -4.9644 19 1 14.0347 0.1581 -3.5813 20 1 13.9364 -2.2308 -3.9867 21 7 3.5217 -1.2094 0.0009 22 6 2.2065 -1.1961 0.0004 23 6 1.4501 -2.4994 -0.0001 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6846 2.1419 -0.0004 28 1 4.1693 2.0649 0.0103 29 1 5.1838 -2.9617 0.5365 30 1 4.7079 -2.3003 -1.0460 31 1 6.1836 -3.2849 -0.9003 32 1 8.1419 -0.6458 0.6709 33 1 8.0696 -2.3995 0.3747 34 1 8.0756 -1.9868 -2.0703 35 1 8.1478 -0.2331 -1.7741 36 1 10.2924 -1.4569 -0.4027 37 1 13.5721 -1.4897 -1.0103 38 1 1.2674 -2.8140 1.0274 39 1 0.4981 -2.3668 -0.5142 40 1 2.0376 -3.2603 -0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317610272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:12 Heat of formation + Delta-G solvation = 1.250172 kcal Electronic energy + Delta-G solvation = -20947.892792 eV Core-core repulsion = 17762.621413 eV Total energy + Delta-G solvation = -3185.271379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.93154 -40.34377 -37.50555 -36.21422 -34.93084 -34.02064 -33.33117 -30.24286 -29.18489 -28.42130 -27.41137 -25.77540 -24.01405 -23.52302 -22.62648 -20.87394 -19.30590 -18.59318 -17.77961 -17.09506 -16.80923 -16.48619 -16.26844 -15.66829 -15.62127 -15.16900 -15.09561 -14.95527 -14.31139 -14.26434 -13.97892 -13.65113 -13.62091 -13.30093 -13.14112 -13.08483 -12.92613 -12.84281 -12.68029 -12.39598 -12.25627 -12.11229 -11.89893 -11.40868 -11.01943 -10.75579 -10.25657 -9.92727 -9.65300 -9.10138 -8.00131 -5.31583 -0.41221 0.21073 1.44592 1.47060 1.57150 1.60931 1.82511 2.53574 2.74238 2.96020 3.32870 3.57786 3.78173 3.88084 3.93289 4.00723 4.05630 4.19011 4.23143 4.41044 4.50596 4.58310 4.70657 4.73891 4.79889 4.82141 4.93401 4.95082 4.97508 5.08031 5.12351 5.18835 5.26771 5.29178 5.40669 5.50700 5.72710 6.21095 6.25082 6.70080 7.01617 7.27275 7.97306 8.24409 9.23528 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037850 B = 0.003120 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.586767 B = 8970.955581 C = 9207.280148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.081 4.081 4 C -0.125 4.125 5 C 0.053 3.947 6 C 0.555 3.445 7 O -0.576 6.576 8 N -0.592 5.592 9 C 0.094 3.906 10 C 0.121 3.879 11 C 0.151 3.849 12 N -0.742 5.742 13 C -0.252 4.252 14 H 0.072 0.928 15 C -0.073 4.073 16 N -0.968 5.968 17 Si 0.980 3.020 18 H -0.267 1.267 19 H -0.291 1.291 20 H -0.286 1.286 21 N -0.457 5.457 22 C 0.106 3.894 23 C -0.104 4.104 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.172 0.828 28 H 0.137 0.863 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.029 0.971 35 H 0.000 1.000 36 H 0.376 0.624 37 H 0.254 0.746 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.787 -1.449 3.480 32.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.109 4.109 3 C -0.106 4.106 4 C -0.146 4.146 5 C -0.084 4.084 6 C 0.343 3.657 7 O -0.455 6.455 8 N -0.323 5.323 9 C -0.047 4.047 10 C -0.002 4.002 11 C 0.023 3.977 12 N -0.386 5.386 13 C -0.384 4.384 14 H 0.090 0.910 15 C -0.266 4.266 16 N -0.618 5.618 17 Si 0.808 3.192 18 H -0.192 1.192 19 H -0.218 1.218 20 H -0.212 1.212 21 N -0.170 5.170 22 C -0.034 4.034 23 C -0.161 4.161 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.189 0.811 28 H 0.155 0.845 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.046 0.954 35 H 0.018 0.982 36 H 0.209 0.791 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -30.939 -1.716 3.360 31.169 hybrid contribution 1.164 1.115 -0.283 1.636 sum -29.775 -0.602 3.077 29.940 Atomic orbital electron populations 1.20989 0.86885 1.05012 1.04179 1.21421 0.99774 0.92704 0.96963 1.21853 0.92164 1.00324 0.96230 1.22170 0.96462 0.98019 0.97977 1.20732 0.92412 0.91107 1.04104 1.18567 0.87380 0.83150 0.76594 1.90771 1.67181 1.35330 1.52258 1.47771 1.06837 1.08966 1.68679 1.22232 0.95503 0.84483 1.02500 1.21459 0.78781 1.03124 0.96859 1.20914 0.83844 0.96998 0.95952 1.42387 1.00807 1.87125 1.08238 1.19624 0.89036 1.40599 0.89092 0.90989 1.25657 0.97892 1.02914 1.00107 1.69826 1.10144 1.57640 1.24188 0.84985 0.78460 0.77033 0.78701 1.19185 1.21800 1.21237 1.67846 1.08890 1.28901 1.11391 1.21963 0.88814 0.97405 0.95264 1.20914 0.99826 0.90969 1.04362 0.89059 0.89793 0.88892 0.81059 0.84538 0.91019 0.88878 0.91220 0.91847 0.88183 0.95350 0.98235 0.79143 0.93687 0.89068 0.87746 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 9.62 71.23 0.69 0.15 16 2 C -0.11 -1.40 5.91 -19.69 -0.12 -1.52 16 3 C -0.08 -1.27 9.85 22.45 0.22 -1.04 16 4 C -0.13 -3.03 9.63 22.61 0.22 -2.81 16 5 C 0.05 1.52 6.56 41.91 0.27 1.79 16 6 C 0.55 20.24 7.64 86.89 0.66 20.90 16 7 O -0.58 -25.52 15.98 -3.75 -0.06 -25.58 16 8 N -0.59 -20.01 2.87 -849.82 -2.44 -22.46 16 9 C 0.09 2.38 9.11 127.77 1.16 3.54 16 10 C 0.12 4.68 5.45 86.38 0.47 5.15 16 11 C 0.15 7.00 6.58 86.38 0.57 7.57 16 12 N -0.74 -41.40 5.60 -343.45 -1.92 -43.33 16 13 C -0.25 -15.13 9.99 84.03 0.84 -14.29 16 14 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 15 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 16 N -0.97 -61.44 13.06 21.65 0.28 -61.15 16 17 Si 0.98 47.98 29.55 68.60 2.03 50.00 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 21 N -0.46 -10.70 6.09 -173.08 -1.05 -11.76 16 22 C 0.11 1.75 6.78 42.68 0.29 2.04 16 23 C -0.10 -0.91 9.77 71.23 0.70 -0.21 16 24 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.08 0.24 8.09 -2.38 -0.02 0.22 16 26 H 0.09 0.18 5.95 -2.39 -0.01 0.16 16 27 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 28 H 0.14 3.49 7.66 -2.91 -0.02 3.47 16 29 H 0.07 1.60 7.99 -2.39 -0.02 1.59 16 30 H 0.09 2.27 5.79 -2.38 -0.01 2.25 16 31 H 0.07 1.65 8.03 -2.38 -0.02 1.63 16 32 H 0.06 2.72 7.51 -2.39 -0.02 2.70 16 33 H 0.10 3.44 8.07 -2.38 -0.02 3.42 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.38 21.79 7.67 -92.71 -0.71 21.08 16 37 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 0.36 5.93 -2.39 -0.01 0.35 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -78.64 334.48 3.61 -75.03 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.34 Total: 21.91 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.44 Total: 17.33 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -5.14 Total: -138.69 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.06 Total: -25.58 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.00 kcal Total: -78.64 3.61 -75.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317610272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.282 kcal (2) G-P(sol) polarization free energy of solvation -78.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds