Wall clock time and date at job start Mon Mar 30 2020 01:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38635 * 120.47048 * 2 1 4 4 C 1.38586 * 118.48739 * 179.71589 * 3 2 1 5 5 C 1.38596 * 119.35111 * 0.57977 * 4 3 2 6 6 N 1.31492 * 120.90170 * 359.68003 * 5 4 3 7 7 C 1.32747 * 121.64432 * 0.02562 * 6 5 4 8 8 C 1.48172 * 119.72425 * 180.02562 * 7 6 5 9 9 O 1.21512 * 119.99886 * 174.18770 * 8 7 6 10 10 N 1.34770 * 119.99732 * 354.19050 * 8 7 6 11 11 C 1.46502 * 119.99758 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47334 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.46656 * 305.00513 * 12 11 10 14 14 C 1.52996 * 109.46836 * 65.00424 * 12 11 10 15 15 C 1.52995 * 109.47125 * 185.00324 * 12 11 10 16 16 N 1.46505 * 109.46883 * 175.00045 * 15 12 11 17 17 C 1.36940 * 119.99757 * 179.97438 * 16 15 12 18 18 H 1.08002 * 120.00239 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99777 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99979 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99940 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47106 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47059 * 120.00421 * 21 19 17 24 24 H 1.48502 * 109.47351 * 240.00484 * 21 19 17 25 25 H 1.08998 * 109.47312 * 262.84364 * 1 2 3 26 26 H 1.08999 * 109.47391 * 142.83917 * 1 2 3 27 27 H 1.09005 * 109.47225 * 22.83922 * 1 2 3 28 28 H 1.07999 * 120.75414 * 359.97299 * 3 2 1 29 29 H 1.08001 * 120.32469 * 180.27960 * 4 3 2 30 30 H 1.07998 * 119.54922 * 179.70426 * 5 4 3 31 31 H 0.96996 * 120.00852 * 0.02562 * 10 8 7 32 32 H 1.08995 * 109.47665 * 300.00520 * 11 10 8 33 33 H 1.09013 * 109.46897 * 60.00494 * 11 10 8 34 34 H 1.09001 * 109.47103 * 180.02562 * 14 12 11 35 35 H 1.09000 * 109.47035 * 299.99860 * 14 12 11 36 36 H 1.09000 * 109.47337 * 59.99780 * 14 12 11 37 37 H 1.09002 * 109.47436 * 295.00129 * 15 12 11 38 38 H 1.09008 * 109.47318 * 55.00362 * 15 12 11 39 39 H 0.96994 * 120.00279 * 0.02562 * 16 15 12 40 40 H 0.97001 * 119.99701 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1469 0.0060 5 6 4.2322 -0.0839 -0.0004 6 7 3.5407 -1.2023 -0.0058 7 6 2.2132 -1.2003 -0.0058 8 6 1.4766 -2.4860 -0.0114 9 8 0.2662 -2.4932 0.0951 10 7 2.1492 -3.6473 -0.1346 11 6 1.4210 -4.9185 -0.1396 12 6 2.4127 -6.0738 -0.2914 13 1 3.0194 -5.9169 -1.1831 14 6 3.3199 -6.1320 0.9392 15 6 1.6451 -7.3909 -0.4219 16 7 2.5875 -8.4810 -0.6864 17 6 2.1272 -9.7615 -0.8411 18 1 1.0695 -9.9676 -0.7685 19 6 3.0200 -10.7943 -1.0922 20 7 4.3089 -10.5430 -1.1812 21 14 2.3923 -12.5410 -1.3025 22 1 0.9144 -12.5567 -1.1574 23 1 2.7621 -13.0409 -2.6511 24 1 3.0011 -13.4139 -0.2668 25 1 -0.3634 -0.1280 1.0196 26 1 -0.3634 -0.8190 -0.6207 27 1 -0.3634 0.9471 -0.3989 28 1 1.6901 2.1415 -0.0004 29 1 4.1722 2.0597 0.0108 30 1 5.3114 -0.1249 -0.0005 31 1 3.1155 -3.6417 -0.2192 32 1 0.8753 -5.0284 0.7975 33 1 0.7184 -4.9315 -0.9730 34 1 4.0267 -6.9548 0.8309 35 1 3.8667 -5.1937 1.0321 36 1 2.7131 -6.2888 1.8310 37 1 1.1080 -7.5918 0.5051 38 1 0.9344 -7.3173 -1.2451 39 1 3.5374 -8.2960 -0.7512 40 1 4.9327 -11.2648 -1.3563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319170582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:29 Heat of formation + Delta-G solvation = 1.225351 kcal Electronic energy + Delta-G solvation = -20625.334984 eV Core-core repulsion = 17440.062529 eV Total energy + Delta-G solvation = -3185.272455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96910 -39.10153 -36.83718 -34.60985 -33.68918 -32.63315 -32.06827 -30.00459 -27.85694 -26.50246 -25.51600 -24.37219 -22.67817 -22.19449 -20.79163 -19.95667 -18.18456 -17.05768 -16.95414 -15.97098 -15.73920 -15.63720 -15.01128 -14.67316 -14.46965 -13.84632 -13.71961 -13.52763 -13.47768 -12.99169 -12.94824 -12.66687 -12.46463 -12.29359 -12.21707 -11.97522 -11.03047 -10.89662 -10.68094 -10.52149 -10.38253 -10.23253 -10.14445 -9.98588 -9.69950 -9.55447 -9.36494 -8.91531 -8.85603 -6.89478 -5.74686 -3.02929 0.37755 0.86564 2.61664 3.07081 3.45238 3.51020 3.53221 3.59316 3.93552 4.41737 4.48317 4.59058 4.60886 4.63481 5.03400 5.08545 5.23888 5.26214 5.38564 5.44924 5.54631 5.60297 5.67203 5.83245 5.85995 5.98968 6.01175 6.04567 6.14844 6.28723 6.35356 6.44149 6.53279 6.69860 6.81441 6.90688 7.32658 7.62083 7.73240 8.15069 8.44516 9.55782 10.13529 10.48352 11.48443 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040227 B = 0.002831 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.886999 B = 9889.347269 C =10424.900323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C -0.088 4.088 4 C -0.148 4.148 5 C 0.090 3.910 6 N -0.454 5.454 7 C 0.074 3.926 8 C 0.566 3.434 9 O -0.532 6.532 10 N -0.703 5.703 11 C 0.125 3.875 12 C -0.111 4.111 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.161 3.839 16 N -0.731 5.731 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.163 0.837 31 H 0.411 0.589 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.022 0.978 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 26.362 3.068 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.114 4.114 4 C -0.168 4.168 5 C -0.070 4.070 6 N -0.165 5.165 7 C -0.064 4.064 8 C 0.351 3.649 9 O -0.409 6.409 10 N -0.354 5.354 11 C 0.001 3.999 12 C -0.130 4.130 13 H 0.095 0.905 14 C -0.199 4.199 15 C 0.033 3.967 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.180 0.820 31 H 0.247 0.753 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.383 25.334 3.128 25.638 hybrid contribution 0.301 -0.025 -0.172 0.347 sum -2.083 25.309 2.957 25.566 Atomic orbital electron populations 1.21068 0.88916 1.03327 1.04126 1.20973 0.98505 0.92375 0.95807 1.21568 0.94186 0.98104 0.97561 1.22377 0.95287 0.99878 0.99216 1.22795 1.00551 0.87281 0.96394 1.67553 1.07103 1.32051 1.09774 1.21080 0.89859 0.93768 1.01721 1.17846 0.86589 0.83123 0.77351 1.90734 1.13110 1.86733 1.50331 1.45944 1.11848 1.05503 1.72092 1.21496 0.94683 0.81202 1.02487 1.21553 0.97055 0.94762 0.99611 0.90462 1.21794 0.99729 1.01337 0.97089 1.20574 0.92413 0.86014 0.97714 1.42355 1.05641 1.03120 1.86449 1.19287 0.92660 0.84407 1.40472 0.91102 1.24739 0.95377 0.98079 1.02935 1.69669 1.00768 1.31373 1.56500 0.86109 0.77798 0.84976 0.77278 1.20550 1.21905 1.21894 0.90289 0.88135 0.92249 0.84179 0.84248 0.81994 0.75292 0.91094 0.91109 0.91148 0.93696 0.92863 0.95979 0.96121 0.78180 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 8.73 36.00 0.31 -0.81 16 2 C -0.07 -0.75 5.93 -104.09 -0.62 -1.37 16 3 C -0.09 -0.66 9.83 -39.31 -0.39 -1.05 16 4 C -0.15 -0.97 10.11 -39.32 -0.40 -1.37 16 5 C 0.09 0.74 11.18 -17.57 -0.20 0.54 16 6 N -0.45 -5.12 9.56 -9.80 -0.09 -5.21 16 7 C 0.07 0.90 6.75 -83.01 -0.56 0.34 16 8 C 0.57 7.95 7.75 -12.18 -0.09 7.85 16 9 O -0.53 -8.41 13.31 5.35 0.07 -8.33 16 10 N -0.70 -9.44 5.27 -61.14 -0.32 -9.76 16 11 C 0.12 1.80 5.06 -4.04 -0.02 1.78 16 12 C -0.11 -1.78 2.46 -90.62 -0.22 -2.00 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 14 C -0.14 -2.22 8.94 37.16 0.33 -1.89 16 15 C 0.16 3.25 5.65 -4.04 -0.02 3.23 16 16 N -0.73 -18.59 5.33 -59.90 -0.32 -18.91 16 17 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 21 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.10 1.18 5.87 -51.93 -0.30 0.88 16 27 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 28 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 30 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.41 5.15 7.00 -40.82 -0.29 4.87 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.07 1.27 7.18 -51.93 -0.37 0.89 16 35 H 0.04 0.60 7.18 -51.93 -0.37 0.23 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 39 H 0.38 10.17 6.85 -40.82 -0.28 9.89 16 40 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -32.73 334.72 -7.84 -40.57 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.81 Total: 8.83 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.12 Total: -2.16 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.01 Total: -61.57 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.07 Total: -8.33 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.73 -7.84 -40.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319170582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.796 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds