Wall clock time and date at job start Mon Mar 30 2020 01:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38635 * 120.47048 * 2 1 4 4 C 1.38586 * 118.48739 * 179.71589 * 3 2 1 5 5 C 1.38596 * 119.35111 * 0.57977 * 4 3 2 6 6 N 1.31492 * 120.90170 * 359.68003 * 5 4 3 7 7 C 1.32747 * 121.64432 * 0.02562 * 6 5 4 8 8 C 1.48172 * 119.72425 * 180.02562 * 7 6 5 9 9 O 1.21512 * 119.99886 * 174.18770 * 8 7 6 10 10 N 1.34770 * 119.99732 * 354.19050 * 8 7 6 11 11 C 1.46502 * 119.99758 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47334 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.46656 * 305.00513 * 12 11 10 14 14 C 1.52996 * 109.46836 * 65.00424 * 12 11 10 15 15 C 1.52995 * 109.47125 * 185.00324 * 12 11 10 16 16 N 1.46505 * 109.46883 * 175.00045 * 15 12 11 17 17 C 1.36940 * 119.99757 * 179.97438 * 16 15 12 18 18 H 1.08002 * 120.00239 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99777 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99979 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99940 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47106 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47059 * 120.00421 * 21 19 17 24 24 H 1.48502 * 109.47351 * 240.00484 * 21 19 17 25 25 H 1.08998 * 109.47312 * 262.84364 * 1 2 3 26 26 H 1.08999 * 109.47391 * 142.83917 * 1 2 3 27 27 H 1.09005 * 109.47225 * 22.83922 * 1 2 3 28 28 H 1.07999 * 120.75414 * 359.97299 * 3 2 1 29 29 H 1.08001 * 120.32469 * 180.27960 * 4 3 2 30 30 H 1.07998 * 119.54922 * 179.70426 * 5 4 3 31 31 H 0.96996 * 120.00852 * 0.02562 * 10 8 7 32 32 H 1.08995 * 109.47665 * 300.00520 * 11 10 8 33 33 H 1.09013 * 109.46897 * 60.00494 * 11 10 8 34 34 H 1.09001 * 109.47103 * 180.02562 * 14 12 11 35 35 H 1.09000 * 109.47035 * 299.99860 * 14 12 11 36 36 H 1.09000 * 109.47337 * 59.99780 * 14 12 11 37 37 H 1.09002 * 109.47436 * 295.00129 * 15 12 11 38 38 H 1.09008 * 109.47318 * 55.00362 * 15 12 11 39 39 H 0.96994 * 120.00279 * 0.02562 * 16 15 12 40 40 H 0.97001 * 119.99701 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1469 0.0060 5 6 4.2322 -0.0839 -0.0004 6 7 3.5407 -1.2023 -0.0058 7 6 2.2132 -1.2003 -0.0058 8 6 1.4766 -2.4860 -0.0114 9 8 0.2662 -2.4932 0.0951 10 7 2.1492 -3.6473 -0.1346 11 6 1.4210 -4.9185 -0.1396 12 6 2.4127 -6.0738 -0.2914 13 1 3.0194 -5.9169 -1.1831 14 6 3.3199 -6.1320 0.9392 15 6 1.6451 -7.3909 -0.4219 16 7 2.5875 -8.4810 -0.6864 17 6 2.1272 -9.7615 -0.8411 18 1 1.0695 -9.9676 -0.7685 19 6 3.0200 -10.7943 -1.0922 20 7 4.3089 -10.5430 -1.1812 21 14 2.3923 -12.5410 -1.3025 22 1 0.9144 -12.5567 -1.1574 23 1 2.7621 -13.0409 -2.6511 24 1 3.0011 -13.4139 -0.2668 25 1 -0.3634 -0.1280 1.0196 26 1 -0.3634 -0.8190 -0.6207 27 1 -0.3634 0.9471 -0.3989 28 1 1.6901 2.1415 -0.0004 29 1 4.1722 2.0597 0.0108 30 1 5.3114 -0.1249 -0.0005 31 1 3.1155 -3.6417 -0.2192 32 1 0.8753 -5.0284 0.7975 33 1 0.7184 -4.9315 -0.9730 34 1 4.0267 -6.9548 0.8309 35 1 3.8667 -5.1937 1.0321 36 1 2.7131 -6.2888 1.8310 37 1 1.1080 -7.5918 0.5051 38 1 0.9344 -7.3173 -1.2451 39 1 3.5374 -8.2960 -0.7512 40 1 4.9327 -11.2648 -1.3563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319170582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:29 Heat of formation + Delta-G solvation = -21.229334 kcal Electronic energy + Delta-G solvation = -20626.308693 eV Core-core repulsion = 17440.062529 eV Total energy + Delta-G solvation = -3186.246164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.76971 -40.06698 -38.25707 -36.09463 -34.69603 -33.94757 -32.98934 -31.81978 -28.68364 -27.74128 -27.08632 -25.43127 -24.20929 -23.07168 -21.83323 -21.33541 -19.43519 -18.74975 -17.83556 -17.00284 -16.79663 -16.45693 -16.43586 -15.89050 -15.73825 -15.44348 -15.00735 -14.79326 -14.45970 -14.09635 -14.01798 -13.69990 -13.61602 -13.58293 -13.23583 -12.96777 -12.90777 -12.82193 -12.20486 -12.12945 -12.01081 -11.71244 -11.66439 -11.10128 -10.95591 -10.76630 -10.42636 -10.25503 -9.86330 -8.99753 -7.95448 -5.24010 -0.34036 0.25159 1.47724 1.48380 1.58707 1.71074 2.05335 2.56580 2.84736 3.16965 3.38325 3.69691 3.75933 3.86351 3.93990 3.97088 4.06010 4.07484 4.32734 4.50849 4.52522 4.57369 4.68458 4.73123 4.79188 4.80058 4.91778 5.02445 5.11063 5.11330 5.16795 5.27460 5.34644 5.41392 5.48122 5.50134 5.70126 6.27173 6.38962 6.81268 7.12019 7.33830 8.08767 8.33135 9.28392 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040227 B = 0.002831 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.886999 B = 9889.347269 C =10424.900323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.086 4.086 4 C -0.130 4.130 5 C 0.080 3.920 6 N -0.478 5.478 7 C 0.041 3.959 8 C 0.561 3.439 9 O -0.558 6.558 10 N -0.700 5.700 11 C 0.137 3.863 12 C -0.095 4.095 13 H 0.075 0.925 14 C -0.134 4.134 15 C 0.159 3.841 16 N -0.742 5.742 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.267 1.267 23 H -0.293 1.293 24 H -0.292 1.292 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.173 0.827 29 H 0.180 0.820 30 H 0.189 0.811 31 H 0.415 0.585 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.024 0.976 38 H 0.022 0.978 39 H 0.376 0.624 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 28.695 3.240 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.081 4.081 6 N -0.189 5.189 7 C -0.095 4.095 8 C 0.348 3.652 9 O -0.437 6.437 10 N -0.351 5.351 11 C 0.013 3.987 12 C -0.114 4.114 13 H 0.093 0.907 14 C -0.192 4.192 15 C 0.032 3.968 16 N -0.386 5.386 17 C -0.377 4.377 18 H 0.093 0.907 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.220 1.220 24 H -0.219 1.219 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.190 0.810 29 H 0.198 0.802 30 H 0.206 0.794 31 H 0.252 0.748 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.209 0.791 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.222 27.689 3.307 27.974 hybrid contribution 0.268 -0.595 -0.215 0.688 sum -1.954 27.093 3.092 27.339 Atomic orbital electron populations 1.20978 0.89038 1.03681 1.03290 1.21157 0.98706 0.92920 0.96158 1.21978 0.94790 0.98186 0.96231 1.22837 0.95167 1.00721 0.96211 1.23403 1.01831 0.87264 0.95565 1.67483 1.06768 1.33913 1.10764 1.20846 0.90559 0.93209 1.04878 1.18277 0.86500 0.83920 0.76526 1.90716 1.14231 1.87272 1.51513 1.45849 1.11964 1.05074 1.72261 1.21235 0.94024 0.81188 1.02253 1.21332 0.96909 0.93304 0.99840 0.90671 1.21708 0.99194 1.01550 0.96737 1.20711 0.92059 0.86593 0.97479 1.42534 1.06009 1.03605 1.86416 1.19674 0.92910 0.85754 1.39348 0.90732 1.25567 0.95645 1.02070 1.03527 1.69819 1.01865 1.32315 1.57968 0.85062 0.77862 0.79996 0.76769 1.19153 1.21966 1.21937 0.90983 0.90816 0.89519 0.80955 0.80231 0.79370 0.74764 0.91243 0.91514 0.93702 0.91278 0.92750 0.95825 0.96021 0.79141 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 8.73 71.23 0.62 -1.49 16 2 C -0.09 -1.66 5.93 -19.52 -0.12 -1.78 16 3 C -0.09 -1.00 9.83 22.45 0.22 -0.78 16 4 C -0.13 -1.18 10.11 22.44 0.23 -0.96 16 5 C 0.08 1.09 11.18 84.83 0.95 2.04 16 6 N -0.48 -10.25 9.56 -184.91 -1.77 -12.01 16 7 C 0.04 1.00 6.75 41.89 0.28 1.28 16 8 C 0.56 16.07 7.75 86.88 0.67 16.74 16 9 O -0.56 -18.25 13.31 -3.75 -0.05 -18.30 16 10 N -0.70 -18.92 5.27 -465.64 -2.46 -21.38 16 11 C 0.14 3.97 5.06 86.38 0.44 4.41 16 12 C -0.09 -3.06 2.46 -10.80 -0.03 -3.09 16 13 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.13 -4.20 8.94 71.98 0.64 -3.55 16 15 C 0.16 6.46 5.65 86.38 0.49 6.95 16 16 N -0.74 -38.32 5.33 -343.43 -1.83 -40.15 16 17 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 18 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 20 N -0.97 -59.82 13.06 21.65 0.28 -59.54 16 21 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.79 5.87 -2.39 -0.01 1.78 16 27 H 0.09 1.07 8.05 -2.38 -0.02 1.05 16 28 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 29 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 30 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.41 10.35 7.00 -92.71 -0.65 9.71 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.04 1.63 7.18 -2.39 -0.02 1.62 16 35 H 0.07 1.80 7.18 -2.39 -0.02 1.79 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.38 20.41 6.85 -92.71 -0.63 19.77 16 40 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -71.82 334.72 1.68 -70.14 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.23 Total: 29.72 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.71 Total: 2.70 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -5.77 Total: -133.08 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.05 Total: -18.30 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -71.82 1.68 -70.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319170582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.909 kcal (2) G-P(sol) polarization free energy of solvation -71.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds