Wall clock time and date at job start Mon Mar 30 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38627 * 120.46961 * 2 1 4 4 C 1.38591 * 118.49120 * 179.75863 * 3 2 1 5 5 C 1.38602 * 119.34762 * 0.53956 * 4 3 2 6 6 N 1.31495 * 120.90022 * 359.69680 * 5 4 3 7 7 C 1.32744 * 121.64577 * 0.02819 * 6 5 4 8 8 C 1.48163 * 119.72277 * 179.97438 * 7 6 5 9 9 O 1.21518 * 120.00008 * 174.22684 * 8 7 6 10 10 N 1.34780 * 120.00433 * 354.23221 * 8 7 6 11 11 C 1.46500 * 120.00519 * 179.97438 * 10 8 7 12 12 C 1.52991 * 109.47126 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47244 * 55.00241 * 12 11 10 14 14 C 1.52999 * 109.47459 * 295.00114 * 12 11 10 15 15 C 1.53001 * 109.46979 * 174.99915 * 12 11 10 16 16 N 1.46503 * 109.47020 * 185.00196 * 15 12 11 17 17 C 1.36938 * 119.99875 * 180.02562 * 16 15 12 18 18 H 1.08002 * 119.99967 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99962 * 179.97438 * 17 16 15 20 20 N 1.31612 * 119.99968 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99804 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47224 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46815 * 120.00343 * 21 19 17 24 24 H 1.48501 * 109.46933 * 239.99948 * 21 19 17 25 25 H 1.09007 * 109.47055 * 262.82878 * 1 2 3 26 26 H 1.08999 * 109.46938 * 142.83497 * 1 2 3 27 27 H 1.08997 * 109.47345 * 22.83591 * 1 2 3 28 28 H 1.08009 * 120.75486 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.32514 * 180.26132 * 4 3 2 30 30 H 1.07998 * 119.54669 * 179.72876 * 5 4 3 31 31 H 0.97000 * 119.99157 * 359.97438 * 10 8 7 32 32 H 1.08995 * 109.46864 * 300.00077 * 11 10 8 33 33 H 1.09004 * 109.46990 * 59.99672 * 11 10 8 34 34 H 1.09003 * 109.47334 * 180.02562 * 14 12 11 35 35 H 1.09004 * 109.46996 * 300.00279 * 14 12 11 36 36 H 1.08996 * 109.47269 * 59.99518 * 14 12 11 37 37 H 1.08999 * 109.47475 * 304.99903 * 15 12 11 38 38 H 1.09000 * 109.47036 * 65.00335 * 15 12 11 39 39 H 0.96994 * 120.00171 * 359.97438 * 16 15 12 40 40 H 0.97001 * 119.99974 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5950 1.1470 0.0051 5 6 4.2322 -0.0839 -0.0013 6 7 3.5407 -1.2023 -0.0062 7 6 2.2133 -1.2003 -0.0058 8 6 1.4768 -2.4860 -0.0120 9 8 0.2663 -2.4933 0.0942 10 7 2.1494 -3.6474 -0.1354 11 6 1.4213 -4.9186 -0.1410 12 6 2.4129 -6.0737 -0.2928 13 1 3.1686 -6.0091 0.4901 14 6 3.0892 -5.9886 -1.6626 15 6 1.6677 -7.4046 -0.1738 16 7 2.6313 -8.5078 -0.1995 17 6 2.1932 -9.8019 -0.1068 18 1 1.1373 -10.0092 -0.0143 19 6 3.1062 -10.8473 -0.1317 20 7 4.3929 -10.5946 -0.2449 21 14 2.5085 -12.6125 -0.0045 22 1 1.0284 -12.6267 0.1138 23 1 2.9157 -13.3617 -1.2204 24 1 3.1066 -13.2524 1.1946 25 1 -0.3633 -0.1283 1.0197 26 1 -0.3633 -0.8189 -0.6208 27 1 -0.3634 0.9471 -0.3988 28 1 1.6900 2.1415 0.0004 29 1 4.1722 2.0598 0.0095 30 1 5.3114 -0.1249 -0.0018 31 1 3.1156 -3.6415 -0.2204 32 1 0.8754 -5.0287 0.7960 33 1 0.7188 -4.9313 -0.9744 34 1 3.7954 -6.8118 -1.7709 35 1 2.3336 -6.0531 -2.4455 36 1 3.6201 -5.0404 -1.7474 37 1 1.1135 -7.4282 0.7646 38 1 0.9741 -7.5085 -1.0081 39 1 3.5796 -8.3217 -0.2829 40 1 5.0309 -11.3251 -0.2619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319170585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:32 Heat of formation + Delta-G solvation = 1.227451 kcal Electronic energy + Delta-G solvation = -20625.319818 eV Core-core repulsion = 17440.047454 eV Total energy + Delta-G solvation = -3185.272364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.96871 -39.10059 -36.83816 -34.60966 -33.68950 -32.63297 -32.06825 -30.00583 -27.85706 -26.50683 -25.51620 -24.37219 -22.67863 -22.19445 -20.79083 -19.95821 -18.18512 -17.05485 -16.95322 -16.00892 -15.76383 -15.52368 -15.08069 -14.67428 -14.46266 -13.83558 -13.72056 -13.52790 -13.47554 -13.03342 -12.94158 -12.60503 -12.49098 -12.29794 -12.20212 -12.00498 -11.03181 -10.89655 -10.67571 -10.53111 -10.38023 -10.23146 -10.14711 -9.98686 -9.69984 -9.55401 -9.36457 -8.91434 -8.85631 -6.89492 -5.74662 -3.02890 0.37712 0.86571 2.61628 3.07075 3.45255 3.51042 3.53253 3.59277 3.93600 4.41709 4.48279 4.59028 4.60880 4.63464 5.03374 5.08492 5.23770 5.26225 5.38491 5.44586 5.54663 5.60318 5.67160 5.83188 5.85480 5.99272 6.00861 6.04153 6.14751 6.28334 6.35090 6.43725 6.53251 6.69597 6.81322 6.90585 7.32654 7.62063 7.73274 8.15064 8.44512 9.55795 10.13551 10.48382 11.48468 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040496 B = 0.002829 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.267230 B = 9895.096932 C =10428.176397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C -0.088 4.088 4 C -0.148 4.148 5 C 0.090 3.910 6 N -0.454 5.454 7 C 0.074 3.926 8 C 0.566 3.434 9 O -0.532 6.532 10 N -0.703 5.703 11 C 0.125 3.875 12 C -0.111 4.111 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.161 3.839 16 N -0.731 5.731 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.163 0.837 31 H 0.411 0.589 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 26.555 -0.484 26.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.114 4.114 4 C -0.168 4.168 5 C -0.070 4.070 6 N -0.165 5.165 7 C -0.064 4.064 8 C 0.351 3.649 9 O -0.409 6.409 10 N -0.354 5.354 11 C 0.001 3.999 12 C -0.130 4.130 13 H 0.096 0.904 14 C -0.199 4.199 15 C 0.033 3.967 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.180 0.820 31 H 0.247 0.753 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.218 0.782 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.699 25.526 -0.400 25.671 hybrid contribution 0.320 -0.037 0.047 0.326 sum -2.378 25.489 -0.353 25.602 Atomic orbital electron populations 1.21069 0.88916 1.03312 1.04140 1.20973 0.98504 0.92374 0.95811 1.21569 0.94187 0.98104 0.97566 1.22380 0.95286 0.99877 0.99213 1.22798 1.00553 0.87279 0.96392 1.67554 1.07104 1.32051 1.09770 1.21077 0.89859 0.93765 1.01722 1.17848 0.86593 0.83127 0.77346 1.90736 1.13112 1.86736 1.50327 1.45947 1.11850 1.05515 1.72079 1.21491 0.94715 0.81205 1.02446 1.21554 0.97864 0.94676 0.98900 0.90429 1.21794 1.00887 1.01237 0.96015 1.20573 0.92363 0.85717 0.98058 1.42354 1.05231 1.01180 1.88800 1.19287 0.92566 0.83114 1.41865 0.91102 1.24739 0.95331 0.97960 1.03091 1.69666 1.00186 1.30762 1.57693 0.86109 0.77727 0.85150 0.77183 1.20549 1.21895 1.21902 0.90277 0.88144 0.92252 0.84179 0.84246 0.81991 0.75293 0.91098 0.91107 0.91127 0.92866 0.93763 0.96111 0.95985 0.78181 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 8.73 36.01 0.31 -0.81 16 2 C -0.07 -0.75 5.93 -104.09 -0.62 -1.37 16 3 C -0.09 -0.66 9.83 -39.31 -0.39 -1.05 16 4 C -0.15 -0.97 10.11 -39.32 -0.40 -1.37 16 5 C 0.09 0.74 11.18 -17.56 -0.20 0.54 16 6 N -0.45 -5.13 9.56 -9.80 -0.09 -5.22 16 7 C 0.07 0.90 6.75 -83.01 -0.56 0.34 16 8 C 0.57 7.95 7.75 -12.18 -0.09 7.85 16 9 O -0.53 -8.41 13.31 5.35 0.07 -8.34 16 10 N -0.70 -9.44 5.27 -61.15 -0.32 -9.77 16 11 C 0.12 1.80 5.06 -4.05 -0.02 1.78 16 12 C -0.11 -1.78 2.46 -90.62 -0.22 -2.01 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.14 -2.21 8.94 37.16 0.33 -1.88 16 15 C 0.16 3.25 5.65 -4.04 -0.02 3.23 16 16 N -0.73 -18.59 5.33 -59.90 -0.32 -18.91 16 17 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 21 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.10 1.17 5.86 -51.93 -0.30 0.87 16 27 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 28 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 29 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 30 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.41 5.15 7.00 -40.82 -0.29 4.87 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.27 7.18 -51.93 -0.37 0.89 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.04 0.59 7.18 -51.93 -0.37 0.21 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.38 10.17 6.85 -40.82 -0.28 9.89 16 40 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -32.73 334.73 -7.84 -40.58 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.81 Total: 8.82 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.12 Total: -2.14 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.01 Total: -61.58 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.07 Total: -8.34 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.73 -7.84 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319170585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.805 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds