Wall clock time and date at job start Mon Mar 30 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38627 * 120.46961 * 2 1 4 4 C 1.38591 * 118.49120 * 179.75863 * 3 2 1 5 5 C 1.38602 * 119.34762 * 0.53956 * 4 3 2 6 6 N 1.31495 * 120.90022 * 359.69680 * 5 4 3 7 7 C 1.32744 * 121.64577 * 0.02819 * 6 5 4 8 8 C 1.48163 * 119.72277 * 179.97438 * 7 6 5 9 9 O 1.21518 * 120.00008 * 174.22684 * 8 7 6 10 10 N 1.34780 * 120.00433 * 354.23221 * 8 7 6 11 11 C 1.46500 * 120.00519 * 179.97438 * 10 8 7 12 12 C 1.52991 * 109.47126 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47244 * 55.00241 * 12 11 10 14 14 C 1.52999 * 109.47459 * 295.00114 * 12 11 10 15 15 C 1.53001 * 109.46979 * 174.99915 * 12 11 10 16 16 N 1.46503 * 109.47020 * 185.00196 * 15 12 11 17 17 C 1.36938 * 119.99875 * 180.02562 * 16 15 12 18 18 H 1.08002 * 119.99967 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99962 * 179.97438 * 17 16 15 20 20 N 1.31612 * 119.99968 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99804 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47224 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46815 * 120.00343 * 21 19 17 24 24 H 1.48501 * 109.46933 * 239.99948 * 21 19 17 25 25 H 1.09007 * 109.47055 * 262.82878 * 1 2 3 26 26 H 1.08999 * 109.46938 * 142.83497 * 1 2 3 27 27 H 1.08997 * 109.47345 * 22.83591 * 1 2 3 28 28 H 1.08009 * 120.75486 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.32514 * 180.26132 * 4 3 2 30 30 H 1.07998 * 119.54669 * 179.72876 * 5 4 3 31 31 H 0.97000 * 119.99157 * 359.97438 * 10 8 7 32 32 H 1.08995 * 109.46864 * 300.00077 * 11 10 8 33 33 H 1.09004 * 109.46990 * 59.99672 * 11 10 8 34 34 H 1.09003 * 109.47334 * 180.02562 * 14 12 11 35 35 H 1.09004 * 109.46996 * 300.00279 * 14 12 11 36 36 H 1.08996 * 109.47269 * 59.99518 * 14 12 11 37 37 H 1.08999 * 109.47475 * 304.99903 * 15 12 11 38 38 H 1.09000 * 109.47036 * 65.00335 * 15 12 11 39 39 H 0.96994 * 120.00171 * 359.97438 * 16 15 12 40 40 H 0.97001 * 119.99974 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5950 1.1470 0.0051 5 6 4.2322 -0.0839 -0.0013 6 7 3.5407 -1.2023 -0.0062 7 6 2.2133 -1.2003 -0.0058 8 6 1.4768 -2.4860 -0.0120 9 8 0.2663 -2.4933 0.0942 10 7 2.1494 -3.6474 -0.1354 11 6 1.4213 -4.9186 -0.1410 12 6 2.4129 -6.0737 -0.2928 13 1 3.1686 -6.0091 0.4901 14 6 3.0892 -5.9886 -1.6626 15 6 1.6677 -7.4046 -0.1738 16 7 2.6313 -8.5078 -0.1995 17 6 2.1932 -9.8019 -0.1068 18 1 1.1373 -10.0092 -0.0143 19 6 3.1062 -10.8473 -0.1317 20 7 4.3929 -10.5946 -0.2449 21 14 2.5085 -12.6125 -0.0045 22 1 1.0284 -12.6267 0.1138 23 1 2.9157 -13.3617 -1.2204 24 1 3.1066 -13.2524 1.1946 25 1 -0.3633 -0.1283 1.0197 26 1 -0.3633 -0.8189 -0.6208 27 1 -0.3634 0.9471 -0.3988 28 1 1.6900 2.1415 0.0004 29 1 4.1722 2.0598 0.0095 30 1 5.3114 -0.1249 -0.0018 31 1 3.1156 -3.6415 -0.2204 32 1 0.8754 -5.0287 0.7960 33 1 0.7188 -4.9313 -0.9744 34 1 3.7954 -6.8118 -1.7709 35 1 2.3336 -6.0531 -2.4455 36 1 3.6201 -5.0404 -1.7474 37 1 1.1135 -7.4282 0.7646 38 1 0.9741 -7.5085 -1.0081 39 1 3.5796 -8.3217 -0.2829 40 1 5.0309 -11.3251 -0.2619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319170585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:31 Heat of formation + Delta-G solvation = -21.237017 kcal Electronic energy + Delta-G solvation = -20626.293950 eV Core-core repulsion = 17440.047454 eV Total energy + Delta-G solvation = -3186.246497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76953 -40.06648 -38.25759 -36.09459 -34.69660 -33.94711 -32.98949 -31.82059 -28.68307 -27.74354 -27.08635 -25.43116 -24.20965 -23.07207 -21.83234 -21.33651 -19.43535 -18.75081 -17.82750 -17.07913 -16.68246 -16.46880 -16.43107 -15.98105 -15.70423 -15.43175 -14.98818 -14.82165 -14.44937 -14.09655 -14.00764 -13.70430 -13.60508 -13.59743 -13.23167 -12.96810 -12.90946 -12.82976 -12.19825 -12.13271 -12.01344 -11.71182 -11.66662 -11.10091 -10.95638 -10.76723 -10.42665 -10.25472 -9.86280 -8.99794 -7.95446 -5.23998 -0.34099 0.25146 1.47704 1.48375 1.58711 1.71004 2.05319 2.56561 2.84650 3.17000 3.38322 3.69664 3.75931 3.86341 3.94049 3.96914 4.05910 4.07467 4.32705 4.50831 4.52371 4.57395 4.68491 4.73147 4.79184 4.79977 4.91649 5.01920 5.11038 5.11345 5.16787 5.27397 5.34651 5.41433 5.48041 5.50131 5.70128 6.27143 6.38885 6.81251 7.11991 7.33814 8.08763 8.33139 9.28394 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040496 B = 0.002829 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.267230 B = 9895.096932 C =10428.176397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.086 4.086 4 C -0.130 4.130 5 C 0.080 3.920 6 N -0.478 5.478 7 C 0.042 3.958 8 C 0.561 3.439 9 O -0.558 6.558 10 N -0.700 5.700 11 C 0.137 3.863 12 C -0.095 4.095 13 H 0.075 0.925 14 C -0.134 4.134 15 C 0.159 3.841 16 N -0.742 5.742 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.293 1.293 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.173 0.827 29 H 0.180 0.820 30 H 0.189 0.811 31 H 0.415 0.585 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.376 0.624 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 28.904 -0.526 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.081 4.081 6 N -0.190 5.190 7 C -0.095 4.095 8 C 0.348 3.652 9 O -0.437 6.437 10 N -0.352 5.352 11 C 0.013 3.987 12 C -0.114 4.114 13 H 0.093 0.907 14 C -0.192 4.192 15 C 0.032 3.968 16 N -0.386 5.386 17 C -0.377 4.377 18 H 0.093 0.907 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.220 1.220 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.191 0.809 29 H 0.198 0.802 30 H 0.206 0.794 31 H 0.252 0.748 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.209 0.791 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.564 27.896 -0.442 28.017 hybrid contribution 0.296 -0.611 0.063 0.682 sum -2.269 27.285 -0.379 27.381 Atomic orbital electron populations 1.20980 0.89029 1.03710 1.03273 1.21157 0.98710 0.92913 0.96150 1.21979 0.94786 0.98191 0.96227 1.22839 0.95170 1.00713 0.96205 1.23404 1.01827 0.87265 0.95573 1.67483 1.06782 1.33920 1.10771 1.20843 0.90551 0.93210 1.04881 1.18280 0.86505 0.83924 0.76517 1.90718 1.14234 1.87277 1.51508 1.45852 1.11964 1.05084 1.72251 1.21231 0.94086 0.81191 1.02182 1.21332 0.97648 0.93186 0.99233 0.90701 1.21708 1.00433 1.01464 0.95570 1.20710 0.91916 0.86314 0.97901 1.42533 1.05655 1.01682 1.88694 1.19675 0.92810 0.84516 1.40692 0.90733 1.25567 0.95547 1.02024 1.03662 1.69816 1.01245 1.31689 1.59214 0.85063 0.77842 0.80070 0.76721 1.19151 1.21925 1.21978 0.91047 0.90761 0.89493 0.80945 0.80228 0.79383 0.74767 0.91601 0.91155 0.93697 0.92698 0.91311 0.96054 0.95792 0.79142 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 8.73 71.24 0.62 -1.49 16 2 C -0.09 -1.66 5.93 -19.52 -0.12 -1.77 16 3 C -0.09 -1.00 9.83 22.45 0.22 -0.78 16 4 C -0.13 -1.18 10.11 22.44 0.23 -0.96 16 5 C 0.08 1.10 11.18 84.83 0.95 2.05 16 6 N -0.48 -10.28 9.56 -184.91 -1.77 -12.05 16 7 C 0.04 1.00 6.75 41.89 0.28 1.28 16 8 C 0.56 16.07 7.75 86.88 0.67 16.74 16 9 O -0.56 -18.25 13.31 -3.77 -0.05 -18.30 16 10 N -0.70 -18.93 5.27 -465.67 -2.45 -21.39 16 11 C 0.14 3.97 5.06 86.38 0.44 4.41 16 12 C -0.09 -3.07 2.46 -10.80 -0.03 -3.09 16 13 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 14 C -0.13 -4.18 8.94 71.98 0.64 -3.53 16 15 C 0.16 6.46 5.65 86.38 0.49 6.95 16 16 N -0.74 -38.33 5.33 -343.44 -1.83 -40.16 16 17 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 18 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 20 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 21 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 25 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.07 1.79 5.86 -2.39 -0.01 1.78 16 27 H 0.09 1.06 8.05 -2.39 -0.02 1.04 16 28 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 29 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 30 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.41 10.36 7.00 -92.71 -0.65 9.71 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.04 1.63 7.18 -2.39 -0.02 1.61 16 35 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.07 1.78 7.18 -2.39 -0.02 1.76 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.38 20.41 6.85 -92.71 -0.63 19.78 16 40 H 0.25 14.99 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -71.85 334.73 1.68 -70.17 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -0.23 Total: 29.71 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 5.71 Total: 2.74 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -5.77 Total: -133.14 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.05 Total: -18.30 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -71.85 1.68 -70.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319170585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.933 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds