Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39831 * 126.45564 * 2 1 4 4 C 1.35453 * 107.86113 * 180.26130 * 3 2 1 5 5 N 1.35539 * 108.87354 * 359.74466 * 4 3 2 6 6 H 0.96993 * 125.67645 * 179.97438 * 5 4 3 7 7 C 1.37652 * 108.64233 * 359.97438 * 5 4 3 8 8 C 1.46676 * 126.23210 * 179.97438 * 7 5 4 9 9 O 1.21694 * 119.99851 * 172.87222 * 8 7 5 10 10 N 1.34778 * 120.00245 * 352.88193 * 8 7 5 11 11 C 1.47426 * 125.64250 * 2.15647 * 10 8 7 12 12 C 1.54912 * 104.82762 * 204.14979 * 11 10 8 13 13 C 1.55155 * 101.58348 * 322.99464 * 12 11 10 14 14 C 1.47016 * 125.65185 * 182.18606 * 10 8 7 15 15 H 1.09000 * 110.01090 * 59.42175 * 14 10 8 16 16 C 1.53002 * 109.87828 * 298.33521 * 14 10 8 17 17 N 1.46502 * 109.47265 * 77.51235 * 16 14 10 18 18 C 1.36934 * 120.00022 * 183.44174 * 17 16 14 19 19 H 1.08008 * 119.99843 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00233 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99731 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00277 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47314 * 179.97438 * 22 20 18 24 24 H 1.48507 * 109.47119 * 299.99600 * 22 20 18 25 25 H 1.48497 * 109.47359 * 59.99552 * 22 20 18 26 26 H 1.08995 * 109.46996 * 270.17884 * 1 2 3 27 27 H 1.09000 * 109.47049 * 30.18033 * 1 2 3 28 28 H 1.09005 * 109.46873 * 150.18335 * 1 2 3 29 29 H 1.07992 * 126.07332 * 0.02562 * 3 2 1 30 30 H 1.08002 * 125.56357 * 179.75568 * 4 3 2 31 31 H 1.09000 * 110.36428 * 85.31651 * 11 10 8 32 32 H 1.08997 * 110.46248 * 323.03377 * 11 10 8 33 33 H 1.09003 * 111.00756 * 204.91819 * 12 11 10 34 34 H 1.09003 * 111.00568 * 81.06770 * 12 11 10 35 35 H 1.08998 * 110.71849 * 277.13697 * 13 12 11 36 36 H 1.09004 * 110.72030 * 153.86642 * 13 12 11 37 37 H 1.08994 * 109.47295 * 317.50308 * 16 14 10 38 38 H 1.09006 * 109.47008 * 197.50716 * 16 14 10 39 39 H 0.97002 * 119.99871 * 3.42940 * 17 16 14 40 40 H 0.96999 * 120.00322 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6626 -0.0039 6 1 4.4190 -1.2244 -0.0074 7 6 2.3263 -1.1090 0.0040 8 6 1.8899 -2.5093 0.0080 9 8 0.7112 -2.7789 0.1458 10 7 2.7942 -3.4975 -0.1407 11 6 4.2515 -3.3160 -0.2708 12 6 4.7441 -4.5831 -1.0135 13 6 3.8284 -5.6772 -0.4039 14 6 2.4909 -4.9348 -0.2006 15 1 1.8220 -5.1403 -1.0363 16 6 1.8401 -5.3841 1.1092 17 7 0.4347 -4.9707 1.1232 18 6 -0.3362 -5.2027 2.2309 19 1 0.0918 -5.6908 3.0941 20 6 -1.6677 -4.8105 2.2444 21 7 -2.1891 -4.2152 1.1927 22 14 -2.7195 -5.1276 3.7552 23 1 -4.0936 -4.6170 3.5177 24 1 -2.7728 -6.5872 4.0238 25 1 -2.1282 -4.4302 4.9253 26 1 -0.3633 0.0032 1.0276 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3633 -0.8917 -0.5110 29 1 2.0137 2.1548 0.0004 30 1 4.4973 1.3252 -0.0111 31 1 4.7148 -3.2491 0.7136 32 1 4.4736 -2.4232 -0.8553 33 1 5.7925 -4.7831 -0.7920 34 1 4.5836 -4.4934 -2.0879 35 1 4.2253 -6.0249 0.5499 36 1 3.7063 -6.5087 -1.0981 37 1 2.3619 -4.9269 1.9498 38 1 1.9003 -6.4695 1.1912 39 1 0.0503 -4.5325 0.3479 40 1 -1.6430 -4.0508 0.4080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324145106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = 50.466178 kcal Electronic energy + Delta-G solvation = -22527.527082 eV Core-core repulsion = 19344.389869 eV Total energy + Delta-G solvation = -3183.137213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29508 -39.44058 -37.02923 -34.48520 -32.62284 -31.50532 -31.26617 -29.38250 -28.45747 -26.70195 -24.75050 -23.26145 -22.35261 -21.54215 -20.92539 -19.73597 -18.70808 -17.55648 -16.81991 -16.48059 -15.85327 -15.01857 -14.64994 -14.06155 -13.77956 -13.61219 -13.44640 -13.23438 -13.08691 -12.89375 -12.83756 -12.56625 -12.25769 -11.99803 -11.88062 -11.61540 -11.30113 -11.22766 -10.92172 -10.70101 -10.53722 -10.30653 -9.80342 -9.24437 -8.85555 -8.63470 -8.61533 -8.31084 -7.91785 -6.60085 -5.76472 -2.71833 1.76077 2.89318 3.09343 3.31859 3.64973 3.70577 3.79570 3.87631 4.37081 4.50316 4.73420 4.88402 4.96038 5.07123 5.17446 5.22430 5.35413 5.39298 5.54537 5.59756 5.71583 5.85382 5.88671 5.97433 5.98781 6.11342 6.14362 6.29865 6.36646 6.42005 6.49352 6.72675 6.77632 6.85045 6.99874 7.20033 7.48260 7.84823 8.06985 8.68195 9.16254 9.69376 10.52436 10.70394 11.74437 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.007063 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.684449 B = 3963.468720 C = 5500.973368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.076 4.076 3 C -0.211 4.211 4 C 0.006 3.994 5 N -0.549 5.549 6 H 0.414 0.586 7 C -0.043 4.043 8 C 0.586 3.414 9 O -0.460 6.460 10 N -0.619 5.619 11 C 0.088 3.912 12 C -0.130 4.130 13 C -0.124 4.124 14 C 0.131 3.869 15 H 0.075 0.925 16 C 0.153 3.847 17 N -0.730 5.730 18 C -0.331 4.331 19 H 0.053 0.947 20 C -0.043 4.043 21 N -0.941 5.941 22 Si 1.076 2.924 23 H -0.286 1.286 24 H -0.299 1.299 25 H -0.300 1.300 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.166 0.834 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.015 0.985 38 H 0.019 0.981 39 H 0.383 0.617 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.493 6.356 -6.194 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.236 4.236 4 C -0.129 4.129 5 N -0.152 5.152 6 H 0.257 0.743 7 C -0.156 4.156 8 C 0.374 3.626 9 O -0.330 6.330 10 N -0.357 5.357 11 C -0.036 4.036 12 C -0.168 4.168 13 C -0.162 4.162 14 C 0.028 3.972 15 H 0.093 0.907 16 C 0.024 3.976 17 N -0.382 5.382 18 C -0.463 4.463 19 H 0.071 0.929 20 C -0.241 4.241 21 N -0.586 5.586 22 Si 0.908 3.092 23 H -0.212 1.212 24 H -0.227 1.227 25 H -0.228 1.228 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.157 0.843 30 H 0.183 0.817 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.032 0.968 38 H 0.037 0.963 39 H 0.223 0.777 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.396 6.225 -5.279 18.315 hybrid contribution 2.218 -0.165 -0.618 2.308 sum 18.614 6.059 -5.896 20.444 Atomic orbital electron populations 1.20314 0.88906 1.02536 1.02741 1.20009 0.96101 0.90615 1.01660 1.20766 0.91864 0.98642 1.12288 1.21919 0.99325 0.83385 1.08227 1.42767 1.07559 1.07197 1.57666 0.74267 1.20384 0.83384 0.93707 1.18101 1.16785 0.85609 0.82138 0.78082 1.90925 1.15235 1.81107 1.45689 1.48408 1.05724 1.06637 1.74883 1.22461 0.82720 0.98635 0.99751 1.22746 0.99687 0.94163 1.00183 1.22639 0.94123 0.97604 1.01836 1.21904 0.96150 0.79138 1.00042 0.90732 1.20884 0.87783 0.96226 0.92723 1.42719 1.05103 1.72025 1.18362 1.19926 0.94846 1.36690 0.94802 0.92898 1.25558 0.94884 0.99680 1.04028 1.70710 1.38600 1.43985 1.05347 0.83317 0.76309 0.75199 0.74349 1.21177 1.22671 1.22761 0.91175 0.92530 0.90011 0.84308 0.81685 0.91537 0.91457 0.89877 0.90498 0.90237 0.89897 0.96760 0.96325 0.77668 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.76 36.01 0.35 -1.24 16 2 C -0.08 -1.30 6.21 -104.16 -0.65 -1.95 16 3 C -0.21 -2.86 10.76 -39.98 -0.43 -3.29 16 4 C 0.01 0.07 11.89 -16.91 -0.20 -0.13 16 5 N -0.55 -6.88 5.40 -9.39 -0.05 -6.93 16 6 H 0.41 3.97 5.17 -40.82 -0.21 3.76 16 7 C -0.04 -0.75 6.85 -81.98 -0.56 -1.31 16 8 C 0.59 11.83 7.62 -12.85 -0.10 11.73 16 9 O -0.46 -11.57 11.16 5.19 0.06 -11.51 16 10 N -0.62 -10.31 3.06 -164.55 -0.50 -10.81 16 11 C 0.09 0.97 5.49 -2.53 -0.01 0.96 16 12 C -0.13 -1.17 7.08 -24.58 -0.17 -1.34 16 13 C -0.12 -1.45 6.43 -24.90 -0.16 -1.61 16 14 C 0.13 2.26 3.06 -66.96 -0.20 2.05 16 15 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 16 C 0.15 3.41 5.60 -4.04 -0.02 3.38 16 17 N -0.73 -20.57 4.30 -59.90 -0.26 -20.83 16 18 C -0.33 -10.33 9.99 -15.06 -0.15 -10.48 16 19 H 0.05 1.63 7.83 -52.48 -0.41 1.21 16 20 C -0.04 -1.36 5.50 -17.43 -0.10 -1.45 16 21 N -0.94 -31.64 13.70 55.49 0.76 -30.88 16 22 Si 1.08 28.20 29.92 -169.99 -5.09 23.12 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.71 6.67 -51.93 -0.35 1.36 16 29 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 32 H 0.07 0.62 5.46 -51.93 -0.28 0.34 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 39 H 0.38 11.28 3.87 -40.82 -0.16 11.13 16 40 H 0.26 8.97 6.69 -40.82 -0.27 8.70 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -38.66 317.90 -8.23 -46.88 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.53 Total: 10.84 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.41 Total: -4.67 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -0.05 Total: -69.45 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.06 Total: -11.51 kcal Atomic # 14 Polarization: 28.20 SS G_CDS: -5.09 Total: 23.12 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -38.66 -8.23 -46.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324145106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.351 kcal (2) G-P(sol) polarization free energy of solvation -38.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds