Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39831 * 126.45564 * 2 1 4 4 C 1.35453 * 107.86113 * 180.26130 * 3 2 1 5 5 N 1.35539 * 108.87354 * 359.74466 * 4 3 2 6 6 H 0.96993 * 125.67645 * 179.97438 * 5 4 3 7 7 C 1.37652 * 108.64233 * 359.97438 * 5 4 3 8 8 C 1.46676 * 126.23210 * 179.97438 * 7 5 4 9 9 O 1.21694 * 119.99851 * 172.87222 * 8 7 5 10 10 N 1.34778 * 120.00245 * 352.88193 * 8 7 5 11 11 C 1.47426 * 125.64250 * 2.15647 * 10 8 7 12 12 C 1.54912 * 104.82762 * 204.14979 * 11 10 8 13 13 C 1.55155 * 101.58348 * 322.99464 * 12 11 10 14 14 C 1.47016 * 125.65185 * 182.18606 * 10 8 7 15 15 H 1.09000 * 110.01090 * 59.42175 * 14 10 8 16 16 C 1.53002 * 109.87828 * 298.33521 * 14 10 8 17 17 N 1.46502 * 109.47265 * 77.51235 * 16 14 10 18 18 C 1.36934 * 120.00022 * 183.44174 * 17 16 14 19 19 H 1.08008 * 119.99843 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00233 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99731 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00277 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47314 * 179.97438 * 22 20 18 24 24 H 1.48507 * 109.47119 * 299.99600 * 22 20 18 25 25 H 1.48497 * 109.47359 * 59.99552 * 22 20 18 26 26 H 1.08995 * 109.46996 * 270.17884 * 1 2 3 27 27 H 1.09000 * 109.47049 * 30.18033 * 1 2 3 28 28 H 1.09005 * 109.46873 * 150.18335 * 1 2 3 29 29 H 1.07992 * 126.07332 * 0.02562 * 3 2 1 30 30 H 1.08002 * 125.56357 * 179.75568 * 4 3 2 31 31 H 1.09000 * 110.36428 * 85.31651 * 11 10 8 32 32 H 1.08997 * 110.46248 * 323.03377 * 11 10 8 33 33 H 1.09003 * 111.00756 * 204.91819 * 12 11 10 34 34 H 1.09003 * 111.00568 * 81.06770 * 12 11 10 35 35 H 1.08998 * 110.71849 * 277.13697 * 13 12 11 36 36 H 1.09004 * 110.72030 * 153.86642 * 13 12 11 37 37 H 1.08994 * 109.47295 * 317.50308 * 16 14 10 38 38 H 1.09006 * 109.47008 * 197.50716 * 16 14 10 39 39 H 0.97002 * 119.99871 * 3.42940 * 17 16 14 40 40 H 0.96999 * 120.00322 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6626 -0.0039 6 1 4.4190 -1.2244 -0.0074 7 6 2.3263 -1.1090 0.0040 8 6 1.8899 -2.5093 0.0080 9 8 0.7112 -2.7789 0.1458 10 7 2.7942 -3.4975 -0.1407 11 6 4.2515 -3.3160 -0.2708 12 6 4.7441 -4.5831 -1.0135 13 6 3.8284 -5.6772 -0.4039 14 6 2.4909 -4.9348 -0.2006 15 1 1.8220 -5.1403 -1.0363 16 6 1.8401 -5.3841 1.1092 17 7 0.4347 -4.9707 1.1232 18 6 -0.3362 -5.2027 2.2309 19 1 0.0918 -5.6908 3.0941 20 6 -1.6677 -4.8105 2.2444 21 7 -2.1891 -4.2152 1.1927 22 14 -2.7195 -5.1276 3.7552 23 1 -4.0936 -4.6170 3.5177 24 1 -2.7728 -6.5872 4.0238 25 1 -2.1282 -4.4302 4.9253 26 1 -0.3633 0.0032 1.0276 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3633 -0.8917 -0.5110 29 1 2.0137 2.1548 0.0004 30 1 4.4973 1.3252 -0.0111 31 1 4.7148 -3.2491 0.7136 32 1 4.4736 -2.4232 -0.8553 33 1 5.7925 -4.7831 -0.7920 34 1 4.5836 -4.4934 -2.0879 35 1 4.2253 -6.0249 0.5499 36 1 3.7063 -6.5087 -1.0981 37 1 2.3619 -4.9269 1.9498 38 1 1.9003 -6.4695 1.1912 39 1 0.0503 -4.5325 0.3479 40 1 -1.6430 -4.0508 0.4080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324145106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = 22.375821 kcal Electronic energy + Delta-G solvation = -22528.745171 eV Core-core repulsion = 19344.389869 eV Total energy + Delta-G solvation = -3184.355302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.44580 -40.70317 -38.43186 -36.57048 -33.91073 -33.26217 -32.61687 -30.69626 -29.92708 -28.03433 -26.46707 -24.90423 -24.12755 -22.56818 -22.00850 -21.06319 -19.91248 -19.33609 -18.51653 -17.70390 -17.32817 -16.44222 -16.01698 -15.69918 -15.36702 -15.21069 -14.86467 -14.78699 -14.53362 -14.04725 -13.97733 -13.90324 -13.67913 -13.48000 -13.19613 -13.00450 -12.66637 -12.57424 -12.43195 -12.22376 -12.15396 -11.87428 -11.70618 -11.18650 -10.89621 -10.74962 -9.80429 -9.67259 -9.09151 -8.91751 -8.30056 -5.18041 0.51662 1.50771 1.64252 1.80535 1.82601 1.87621 2.27151 2.40112 2.73995 3.42333 3.48682 3.51221 3.73966 3.88132 4.05932 4.20140 4.22254 4.23985 4.24592 4.36900 4.41494 4.63280 4.68005 4.73782 4.79458 4.81989 4.88972 4.99300 5.01300 5.04458 5.11779 5.27527 5.42232 5.43975 5.57891 5.79234 5.96019 6.51040 6.59202 6.63197 7.13870 7.41907 8.23801 8.34974 9.23072 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.007063 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.684449 B = 3963.468720 C = 5500.973368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.103 4.103 3 C -0.228 4.228 4 C 0.047 3.953 5 N -0.532 5.532 6 H 0.429 0.571 7 C -0.078 4.078 8 C 0.571 3.429 9 O -0.530 6.530 10 N -0.620 5.620 11 C 0.078 3.922 12 C -0.113 4.113 13 C -0.114 4.114 14 C 0.131 3.869 15 H 0.047 0.953 16 C 0.150 3.850 17 N -0.746 5.746 18 C -0.340 4.340 19 H 0.053 0.947 20 C -0.107 4.107 21 N -0.969 5.969 22 Si 1.129 2.871 23 H -0.290 1.290 24 H -0.274 1.274 25 H -0.284 1.284 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.162 0.838 30 H 0.224 0.776 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.002 0.998 38 H 0.026 0.974 39 H 0.374 0.626 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.692 7.216 -6.060 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C -0.251 4.251 4 C -0.089 4.089 5 N -0.136 5.136 6 H 0.276 0.724 7 C -0.191 4.191 8 C 0.361 3.639 9 O -0.405 6.405 10 N -0.355 5.355 11 C -0.044 4.044 12 C -0.151 4.151 13 C -0.152 4.152 14 C 0.027 3.973 15 H 0.066 0.934 16 C 0.022 3.978 17 N -0.397 5.397 18 C -0.471 4.471 19 H 0.071 0.929 20 C -0.299 4.299 21 N -0.616 5.616 22 Si 0.954 3.046 23 H -0.216 1.216 24 H -0.200 1.200 25 H -0.211 1.211 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.179 0.821 30 H 0.240 0.760 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.143 0.857 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.020 0.980 38 H 0.043 0.957 39 H 0.213 0.787 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.730 7.042 -5.159 22.493 hybrid contribution 1.040 -0.379 -0.679 1.299 sum 21.770 6.663 -5.838 23.504 Atomic orbital electron populations 1.20151 0.90932 1.01821 1.00926 1.20203 0.95497 0.92686 1.02791 1.21074 0.92299 0.98647 1.13115 1.22791 1.00230 0.82752 1.03174 1.42709 1.06228 1.08100 1.56515 0.72449 1.19990 0.85676 0.92155 1.21266 1.17403 0.85310 0.83936 0.77234 1.90884 1.18133 1.82361 1.49146 1.48498 1.08055 1.05634 1.73312 1.22877 0.79004 1.00991 1.01536 1.22787 1.01067 0.91136 1.00069 1.22644 0.91060 0.98350 1.03178 1.21863 0.98723 0.80691 0.95994 0.93433 1.21087 0.85200 0.96191 0.95278 1.42981 1.07365 1.72019 1.17298 1.20332 0.95567 1.35641 0.95608 0.92891 1.27226 0.96967 0.99478 1.06233 1.70831 1.38567 1.46343 1.05862 0.82645 0.74267 0.76524 0.71160 1.21599 1.19968 1.21118 0.93650 0.89747 0.94047 0.82056 0.75959 0.89922 0.89230 0.85673 0.89769 0.89323 0.88199 0.97985 0.95685 0.78727 0.94300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.20 9.76 71.24 0.70 -2.50 16 2 C -0.10 -3.61 6.21 -19.56 -0.12 -3.73 16 3 C -0.23 -5.62 10.76 22.01 0.24 -5.38 16 4 C 0.05 0.83 11.89 83.48 0.99 1.82 16 5 N -0.53 -11.67 5.40 -183.61 -0.99 -12.66 16 6 H 0.43 6.43 5.17 -92.71 -0.48 5.95 16 7 C -0.08 -2.73 6.85 40.35 0.28 -2.45 16 8 C 0.57 24.38 7.62 86.45 0.66 25.04 16 9 O -0.53 -29.27 11.16 -4.33 -0.05 -29.32 16 10 N -0.62 -20.83 3.06 -792.73 -2.43 -23.26 16 11 C 0.08 1.48 5.49 86.86 0.48 1.95 16 12 C -0.11 -1.55 7.08 31.99 0.23 -1.32 16 13 C -0.11 -2.39 6.43 31.78 0.20 -2.19 16 14 C 0.13 4.63 3.06 45.34 0.14 4.77 16 15 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 16 C 0.15 6.96 5.60 86.38 0.48 7.45 16 17 N -0.75 -44.61 4.30 -343.44 -1.48 -46.09 16 18 C -0.34 -22.10 9.99 84.03 0.84 -21.26 16 19 H 0.05 3.35 7.83 -2.91 -0.02 3.33 16 20 C -0.11 -7.08 5.50 84.86 0.47 -6.61 16 21 N -0.97 -68.89 13.70 21.65 0.30 -68.59 16 22 Si 1.13 58.41 29.92 68.60 2.05 60.46 16 23 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 25 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.04 1.94 6.67 -2.38 -0.02 1.92 16 29 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.08 1.36 8.13 -2.39 -0.02 1.34 16 32 H 0.09 1.30 5.46 -2.39 -0.01 1.29 16 33 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 1.74 7.85 -2.39 -0.02 1.72 16 36 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.03 1.13 8.07 -2.38 -0.02 1.11 16 39 H 0.37 23.88 3.87 -92.71 -0.36 23.52 16 40 H 0.25 18.09 6.69 -92.71 -0.62 17.47 16 Total: -1.00 -94.60 317.90 3.35 -91.25 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.37 Total: 32.63 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 5.58 Total: -4.43 kcal Atomic # 7 Polarization: -146.00 SS G_CDS: -4.60 Total: -150.60 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.32 kcal Atomic # 14 Polarization: 58.41 SS G_CDS: 2.05 Total: 60.46 kcal Total: -94.60 3.35 -91.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324145106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.626 kcal (2) G-P(sol) polarization free energy of solvation -94.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds