Wall clock time and date at job start Mon Mar 30 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38047 * 126.29145 * 2 1 4 4 C 1.47433 * 126.41160 * 0.02562 * 3 2 1 5 5 O 1.21601 * 120.00090 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99673 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99927 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47008 * 180.02562 * 7 6 4 9 9 H 1.08004 * 120.00412 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00307 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99798 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00717 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47052 * 89.99611 * 12 10 8 14 14 H 1.48496 * 109.47498 * 210.00003 * 12 10 8 15 15 H 1.48502 * 109.46974 * 330.00070 * 12 10 8 16 16 C 1.41288 * 107.17233 * 179.97438 * 3 2 1 17 17 N 1.30452 * 108.02151 * 0.02562 * 16 3 2 18 18 N 1.34255 * 126.29112 * 179.68981 * 2 1 3 19 19 C 1.46502 * 125.75540 * 359.97438 * 18 2 1 20 20 C 1.54268 * 110.03446 * 237.90787 * 19 18 2 21 21 C 1.54960 * 104.16099 * 217.13663 * 20 19 18 22 22 C 1.54892 * 102.77596 * 37.88991 * 21 20 19 23 23 C 1.53878 * 110.02968 * 120.69183 * 19 18 2 24 24 H 1.09002 * 109.47152 * 90.02476 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02576 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02557 * 1 2 3 27 27 H 0.97005 * 120.00246 * 359.97438 * 6 4 3 28 28 H 1.08992 * 109.47355 * 300.00344 * 7 6 4 29 29 H 1.08999 * 109.46976 * 60.00248 * 7 6 4 30 30 H 0.96995 * 120.00504 * 180.02562 * 11 10 8 31 31 H 1.07995 * 125.99159 * 179.97438 * 16 3 2 32 32 H 1.08995 * 110.01648 * 359.30432 * 19 18 2 33 33 H 1.08999 * 110.48882 * 335.78672 * 20 19 18 34 34 H 1.09001 * 110.48253 * 98.42891 * 20 19 18 35 35 H 1.09004 * 110.71933 * 279.57593 * 21 20 19 36 36 H 1.08994 * 110.76643 * 156.22478 * 21 20 19 37 37 H 1.09000 * 110.48303 * 203.40545 * 22 21 20 38 38 H 1.08994 * 110.60105 * 80.82154 * 22 21 20 39 39 H 1.08997 * 110.03091 * 238.56863 * 23 19 18 40 40 H 1.08997 * 110.03204 * 359.95432 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7999 3.5107 -0.0001 7 6 2.3644 4.9095 -0.0001 8 6 3.5716 5.8114 -0.0014 9 1 4.5641 5.3854 -0.0026 10 6 3.4093 7.1806 -0.0012 11 7 2.2007 7.6995 -0.0003 12 14 4.9056 8.2987 -0.0021 13 1 5.3012 8.5951 -1.4025 14 1 4.5769 9.5663 0.6982 15 1 6.0284 7.6236 0.6970 16 6 3.6591 0.6499 0.0006 17 7 3.6341 -0.6544 0.0004 18 7 2.3017 -1.0821 0.0059 19 6 1.8501 -2.4758 0.0139 20 6 2.4201 -3.2089 1.2458 21 6 2.7367 -4.6340 0.7259 22 6 3.2690 -4.3666 -0.7039 23 6 2.3892 -3.2117 -1.2253 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5142 27 1 3.7462 3.2974 -0.0005 28 1 1.7653 5.1035 -0.8897 29 1 1.7662 5.1038 0.8901 30 1 2.0864 8.6627 -0.0005 31 1 4.5449 1.2676 0.0004 32 1 0.7609 -2.5150 0.0270 33 1 3.3295 -2.7193 1.5941 34 1 1.6779 -3.2490 2.0431 35 1 1.8329 -5.2425 0.6942 36 1 3.5017 -5.1084 1.3404 37 1 3.1462 -5.2515 -1.3283 38 1 4.3159 -4.0648 -0.6732 39 1 1.5616 -3.6087 -1.8131 40 1 2.9861 -2.5317 -1.8331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324839713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:44 Heat of formation + Delta-G solvation = 16.469474 kcal Electronic energy + Delta-G solvation = -21078.368963 eV Core-core repulsion = 17893.757543 eV Total energy + Delta-G solvation = -3184.611421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39321 -38.52997 -37.76922 -34.14570 -32.96197 -32.13891 -31.46766 -29.12477 -28.26715 -27.25677 -26.49652 -23.05510 -22.26111 -21.24076 -21.05079 -19.31440 -19.12831 -17.41455 -16.70643 -15.92617 -15.39588 -15.24031 -14.96823 -14.78357 -14.19294 -13.88032 -13.82338 -13.67934 -12.94179 -12.89748 -12.73223 -12.23096 -12.05314 -11.93791 -11.87140 -11.62768 -11.51941 -11.48003 -11.20206 -10.94625 -10.93144 -10.84136 -10.59172 -10.24969 -9.33129 -9.25547 -8.96670 -8.67460 -8.38791 -7.71326 -6.11442 -4.17614 1.75118 2.35671 2.48334 3.28106 3.34113 3.36742 4.02716 4.14874 4.19095 4.26937 4.40167 4.50634 4.67205 4.79914 4.87737 5.04402 5.07941 5.08739 5.24772 5.24953 5.25941 5.45386 5.52329 5.58194 5.61287 5.65528 5.71644 5.80879 5.90831 5.97648 6.06978 6.28716 6.62508 7.01621 7.40577 7.55741 7.60418 7.70416 7.77854 8.03928 8.75137 8.87167 9.24239 9.49406 10.98903 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037438 B = 0.003282 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.727398 B = 8530.039845 C = 9035.356508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.144 3.856 3 C -0.283 4.283 4 C 0.577 3.423 5 O -0.564 6.564 6 N -0.708 5.708 7 C 0.252 3.748 8 C -0.541 4.541 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.080 3.920 17 N -0.300 5.300 18 N -0.359 5.359 19 C 0.154 3.846 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.132 4.132 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.389 0.611 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.188 0.812 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 -24.427 0.065 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.013 3.987 3 C -0.298 4.298 4 C 0.363 3.637 5 O -0.446 6.446 6 N -0.355 5.355 7 C 0.131 3.869 8 C -0.579 4.579 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.524 5.524 12 Si 0.730 3.270 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.108 4.108 17 N -0.119 5.119 18 N -0.140 5.140 19 C 0.052 3.948 20 C -0.170 4.170 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.170 4.170 24 H 0.101 0.899 25 H 0.127 0.873 26 H 0.082 0.918 27 H 0.221 0.779 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.205 0.795 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.087 -25.211 0.067 25.211 hybrid contribution 0.834 1.426 -0.042 1.653 sum 0.747 -23.785 0.025 23.797 Atomic orbital electron populations 1.20654 0.86476 1.04471 1.03882 1.21488 0.94801 0.86353 0.96055 1.20343 0.92653 0.94389 1.22392 1.17249 0.85975 0.83491 0.76981 1.90670 1.16730 1.84386 1.52776 1.46237 1.08589 1.08150 1.72553 1.19078 0.95864 0.74232 0.97708 1.21247 0.92509 0.91288 1.52904 0.91901 1.24946 0.96259 0.98042 0.94792 1.69977 1.21019 1.12278 1.49136 0.86426 0.82422 0.79945 0.78184 1.20504 1.21064 1.19731 1.24056 0.97505 0.91876 0.97318 1.77043 0.96252 1.13041 1.25576 1.48570 1.03990 1.05368 1.56058 1.22085 0.99222 0.76481 0.97048 1.22760 1.02318 0.95745 0.96219 1.22477 1.01155 0.95913 0.96398 1.22317 0.99945 0.97515 0.96025 1.22489 1.00201 0.97808 0.96476 0.89869 0.87267 0.91795 0.77882 0.95535 0.95526 0.92518 0.79483 0.87681 0.89669 0.90872 0.91177 0.90954 0.91355 0.91003 0.90703 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.42 36.01 0.34 -0.88 16 2 C 0.14 2.16 7.01 -81.60 -0.57 1.59 16 3 C -0.28 -4.92 6.13 -105.06 -0.64 -5.56 16 4 C 0.58 12.34 7.81 -12.52 -0.10 12.24 16 5 O -0.56 -13.72 14.84 5.28 0.08 -13.64 16 6 N -0.71 -15.61 5.54 -62.57 -0.35 -15.96 16 7 C 0.25 6.80 5.43 -5.20 -0.03 6.78 16 8 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 9 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 12 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 C 0.08 1.21 11.50 -16.98 -0.20 1.01 16 17 N -0.30 -4.39 11.92 30.86 0.37 -4.02 16 18 N -0.36 -4.72 3.18 -49.08 -0.16 -4.88 16 19 C 0.15 1.45 3.67 -66.81 -0.25 1.20 16 20 C -0.13 -1.12 6.52 -25.03 -0.16 -1.28 16 21 C -0.12 -0.79 6.91 -24.70 -0.17 -0.96 16 22 C -0.12 -0.86 6.83 -25.07 -0.17 -1.03 16 23 C -0.13 -1.11 6.54 -25.61 -0.17 -1.28 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.11 1.65 6.50 -51.93 -0.34 1.32 16 26 H 0.06 0.59 7.06 -51.93 -0.37 0.22 16 27 H 0.39 7.40 7.28 -40.82 -0.30 7.11 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.19 2.34 7.50 -52.49 -0.39 1.95 16 32 H 0.11 0.80 6.66 -51.93 -0.35 0.45 16 33 H 0.08 0.90 7.71 -51.93 -0.40 0.50 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.85 7.82 -51.93 -0.41 0.44 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -33.19 331.83 -7.76 -40.95 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.89 Total: 3.83 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.53 Total: -1.71 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.60 Total: -50.49 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.19 -7.76 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324839713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.419 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds