Wall clock time and date at job start Mon Mar 30 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38047 * 126.29145 * 2 1 4 4 C 1.47433 * 126.41160 * 0.02562 * 3 2 1 5 5 O 1.21601 * 120.00090 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99673 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99927 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47008 * 180.02562 * 7 6 4 9 9 H 1.08004 * 120.00412 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00307 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99798 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00717 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47052 * 89.99611 * 12 10 8 14 14 H 1.48496 * 109.47498 * 210.00003 * 12 10 8 15 15 H 1.48502 * 109.46974 * 330.00070 * 12 10 8 16 16 C 1.41288 * 107.17233 * 179.97438 * 3 2 1 17 17 N 1.30452 * 108.02151 * 0.02562 * 16 3 2 18 18 N 1.34255 * 126.29112 * 179.68981 * 2 1 3 19 19 C 1.46502 * 125.75540 * 359.97438 * 18 2 1 20 20 C 1.54268 * 110.03446 * 237.90787 * 19 18 2 21 21 C 1.54960 * 104.16099 * 217.13663 * 20 19 18 22 22 C 1.54892 * 102.77596 * 37.88991 * 21 20 19 23 23 C 1.53878 * 110.02968 * 120.69183 * 19 18 2 24 24 H 1.09002 * 109.47152 * 90.02476 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02576 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02557 * 1 2 3 27 27 H 0.97005 * 120.00246 * 359.97438 * 6 4 3 28 28 H 1.08992 * 109.47355 * 300.00344 * 7 6 4 29 29 H 1.08999 * 109.46976 * 60.00248 * 7 6 4 30 30 H 0.96995 * 120.00504 * 180.02562 * 11 10 8 31 31 H 1.07995 * 125.99159 * 179.97438 * 16 3 2 32 32 H 1.08995 * 110.01648 * 359.30432 * 19 18 2 33 33 H 1.08999 * 110.48882 * 335.78672 * 20 19 18 34 34 H 1.09001 * 110.48253 * 98.42891 * 20 19 18 35 35 H 1.09004 * 110.71933 * 279.57593 * 21 20 19 36 36 H 1.08994 * 110.76643 * 156.22478 * 21 20 19 37 37 H 1.09000 * 110.48303 * 203.40545 * 22 21 20 38 38 H 1.08994 * 110.60105 * 80.82154 * 22 21 20 39 39 H 1.08997 * 110.03091 * 238.56863 * 23 19 18 40 40 H 1.08997 * 110.03204 * 359.95432 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7999 3.5107 -0.0001 7 6 2.3644 4.9095 -0.0001 8 6 3.5716 5.8114 -0.0014 9 1 4.5641 5.3854 -0.0026 10 6 3.4093 7.1806 -0.0012 11 7 2.2007 7.6995 -0.0003 12 14 4.9056 8.2987 -0.0021 13 1 5.3012 8.5951 -1.4025 14 1 4.5769 9.5663 0.6982 15 1 6.0284 7.6236 0.6970 16 6 3.6591 0.6499 0.0006 17 7 3.6341 -0.6544 0.0004 18 7 2.3017 -1.0821 0.0059 19 6 1.8501 -2.4758 0.0139 20 6 2.4201 -3.2089 1.2458 21 6 2.7367 -4.6340 0.7259 22 6 3.2690 -4.3666 -0.7039 23 6 2.3892 -3.2117 -1.2253 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5142 27 1 3.7462 3.2974 -0.0005 28 1 1.7653 5.1035 -0.8897 29 1 1.7662 5.1038 0.8901 30 1 2.0864 8.6627 -0.0005 31 1 4.5449 1.2676 0.0004 32 1 0.7609 -2.5150 0.0270 33 1 3.3295 -2.7193 1.5941 34 1 1.6779 -3.2490 2.0431 35 1 1.8329 -5.2425 0.6942 36 1 3.5017 -5.1084 1.3404 37 1 3.1462 -5.2515 -1.3283 38 1 4.3159 -4.0648 -0.6732 39 1 1.5616 -3.6087 -1.8131 40 1 2.9861 -2.5317 -1.8331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324839713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:44 Heat of formation + Delta-G solvation = -5.629331 kcal Electronic energy + Delta-G solvation = -21079.327239 eV Core-core repulsion = 17893.757543 eV Total energy + Delta-G solvation = -3185.569697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.55014 -40.04983 -38.71286 -36.11249 -34.45258 -33.78484 -32.59029 -29.83286 -29.74482 -28.28547 -28.02159 -24.95072 -23.37397 -22.67157 -21.64383 -20.90750 -20.10170 -18.96045 -18.03514 -17.28570 -16.84874 -16.51605 -16.33543 -16.01303 -15.78478 -15.47097 -14.80045 -14.57937 -14.35570 -14.12223 -13.95745 -13.81619 -13.72566 -13.17026 -12.93345 -12.87165 -12.70561 -12.63267 -12.20676 -12.11215 -12.05697 -11.98142 -11.64673 -11.50432 -11.45363 -10.77581 -10.71523 -10.31939 -9.91436 -9.45941 -8.26689 -6.42731 0.52424 1.18364 1.34267 1.44568 1.47046 1.58274 2.36114 2.56145 2.71687 3.08228 3.34722 3.52249 3.56431 3.71371 3.90822 4.03461 4.20382 4.25195 4.42468 4.43976 4.50946 4.55139 4.63606 4.70724 4.84473 4.89982 4.99105 5.05678 5.15688 5.17600 5.19928 5.25557 5.29023 5.40981 5.46387 5.53710 5.75818 5.88374 5.98076 6.54963 6.68023 7.00265 7.26113 7.55243 8.85711 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037438 B = 0.003282 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.727398 B = 8530.039845 C = 9035.356508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.152 3.848 3 C -0.318 4.318 4 C 0.576 3.424 5 O -0.601 6.601 6 N -0.705 5.705 7 C 0.270 3.730 8 C -0.556 4.556 9 H 0.083 0.917 10 C 0.004 3.996 11 N -0.931 5.931 12 Si 0.984 3.016 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.256 1.256 16 C 0.082 3.918 17 N -0.306 5.306 18 N -0.346 5.346 19 C 0.139 3.861 20 C -0.131 4.131 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.129 4.129 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.404 0.596 28 H -0.011 1.011 29 H -0.011 1.011 30 H 0.269 0.731 31 H 0.208 0.792 32 H 0.132 0.868 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 -26.766 0.069 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.019 3.981 3 C -0.333 4.333 4 C 0.365 3.635 5 O -0.485 6.485 6 N -0.354 5.354 7 C 0.148 3.852 8 C -0.593 4.593 9 H 0.101 0.899 10 C -0.195 4.195 11 N -0.569 5.569 12 Si 0.807 3.193 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.180 1.180 16 C -0.105 4.105 17 N -0.125 5.125 18 N -0.126 5.126 19 C 0.039 3.961 20 C -0.170 4.170 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.167 4.167 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.240 0.760 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.077 0.923 31 H 0.224 0.776 32 H 0.150 0.850 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.091 -27.625 0.071 27.646 hybrid contribution 0.399 2.007 -0.046 2.046 sum 1.490 -25.618 0.025 25.661 Atomic orbital electron populations 1.20697 0.84832 1.05030 1.04727 1.21797 0.95869 0.86266 0.94209 1.20042 0.94432 0.92488 1.26319 1.17796 0.85251 0.84938 0.75496 1.90640 1.18289 1.85282 1.54302 1.45957 1.09698 1.06481 1.73229 1.18526 0.95349 0.77207 0.94151 1.21624 0.93134 0.91788 1.52795 0.89932 1.26051 0.99708 0.99896 0.93882 1.70138 1.23862 1.12882 1.50060 0.85162 0.78226 0.77281 0.78586 1.19610 1.20888 1.17972 1.24333 0.97312 0.92175 0.96715 1.77031 0.97342 1.12633 1.25541 1.48905 1.03183 1.06404 1.54119 1.22647 1.00897 0.74422 0.98143 1.22757 1.01468 0.96605 0.96134 1.22474 1.02219 0.94821 0.95580 1.22316 0.98768 0.97670 0.96922 1.22497 1.00804 0.97577 0.95859 0.88770 0.90128 0.87744 0.76025 0.99344 0.99322 0.92254 0.77575 0.85047 0.92199 0.89552 0.89037 0.90482 0.89542 0.92642 0.88434 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.27 9.42 71.24 0.67 -1.60 16 2 C 0.15 4.43 7.01 42.14 0.30 4.72 16 3 C -0.32 -11.13 6.13 -20.15 -0.12 -11.25 16 4 C 0.58 25.61 7.81 86.67 0.68 26.29 16 5 O -0.60 -30.79 14.84 -4.03 -0.06 -30.85 16 6 N -0.71 -32.22 5.54 -470.12 -2.60 -34.83 16 7 C 0.27 15.36 5.43 85.63 0.46 15.83 16 8 C -0.56 -31.03 9.28 25.60 0.24 -30.79 16 9 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 10 C 0.00 0.23 5.46 84.65 0.46 0.69 16 11 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 12 Si 0.98 43.08 29.54 68.60 2.03 45.10 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 16 C 0.08 2.44 11.50 85.65 0.99 3.42 16 17 N -0.31 -8.68 11.92 -56.28 -0.67 -9.35 16 18 N -0.35 -8.57 3.18 -309.21 -0.98 -9.55 16 19 C 0.14 2.23 3.67 45.72 0.17 2.40 16 20 C -0.13 -1.88 6.52 31.69 0.21 -1.68 16 21 C -0.11 -1.10 6.91 31.91 0.22 -0.88 16 22 C -0.12 -1.40 6.83 31.67 0.22 -1.18 16 23 C -0.13 -1.85 6.54 31.32 0.20 -1.65 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 2.47 6.50 -2.39 -0.02 2.46 16 26 H 0.10 1.60 7.06 -2.38 -0.02 1.58 16 27 H 0.40 15.60 7.28 -92.70 -0.67 14.92 16 28 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.21 5.00 7.50 -2.91 -0.02 4.98 16 32 H 0.13 1.44 6.66 -2.39 -0.02 1.42 16 33 H 0.06 1.19 7.71 -2.39 -0.02 1.17 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 1.07 7.82 -2.39 -0.02 1.05 16 Total: -1.00 -75.34 331.83 3.05 -72.29 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.37 Total: 19.51 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.69 Total: 4.33 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.97 Total: -110.38 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.06 Total: -30.85 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -75.34 3.05 -72.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324839713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.663 kcal (2) G-P(sol) polarization free energy of solvation -75.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds