Wall clock time and date at job start Mon Mar 30 2020 02:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30838 * 125.89740 * 2 1 4 4 N 1.40088 * 108.20323 * 179.73823 * 3 2 1 5 5 C 1.46502 * 126.03457 * 180.02562 * 4 3 2 6 6 C 1.34948 * 107.92740 * 0.02562 * 4 3 2 7 7 C 1.35315 * 107.74561 * 359.97438 * 6 4 3 8 8 C 1.50695 * 126.03976 * 180.02562 * 7 6 4 9 9 C 1.52993 * 109.47460 * 264.94718 * 8 7 6 10 10 C 1.50695 * 109.47460 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00280 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99829 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99588 * 179.97438 * 12 10 9 14 14 H 1.08006 * 119.99739 * 224.48136 * 13 12 10 15 15 C 1.38952 * 120.00059 * 44.48813 * 13 12 10 16 16 N 1.31400 * 120.00327 * 17.98688 * 15 13 12 17 17 Si 1.86807 * 119.99627 * 197.98362 * 15 13 12 18 18 H 1.48494 * 109.47051 * 60.00373 * 17 15 13 19 19 H 1.48506 * 109.46810 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47511 * 299.99923 * 17 15 13 21 21 C 1.46501 * 120.00220 * 359.97438 * 12 10 9 22 22 C 1.53000 * 117.49739 * 183.27224 * 21 12 10 23 23 C 1.52999 * 117.49523 * 114.61323 * 21 12 10 24 24 H 1.08997 * 109.47031 * 90.02509 * 1 2 3 25 25 H 1.09000 * 109.46759 * 210.02131 * 1 2 3 26 26 H 1.08996 * 109.46786 * 330.02037 * 1 2 3 27 27 H 1.09003 * 109.47124 * 89.97619 * 5 4 3 28 28 H 1.08993 * 109.47240 * 209.97775 * 5 4 3 29 29 H 1.09003 * 109.47032 * 329.97600 * 5 4 3 30 30 H 1.07992 * 126.12539 * 180.02562 * 6 4 3 31 31 H 1.09008 * 109.47090 * 24.94907 * 8 7 6 32 32 H 1.09008 * 109.47340 * 144.94594 * 8 7 6 33 33 H 1.09008 * 109.47123 * 300.00168 * 9 8 7 34 34 H 1.09000 * 109.46996 * 59.99299 * 9 8 7 35 35 H 0.97004 * 120.00746 * 174.95625 * 16 15 13 36 36 H 1.08994 * 115.55110 * 328.94833 * 21 12 10 37 37 H 1.08994 * 117.49810 * 0.02562 * 22 21 12 38 38 H 1.08997 * 117.49478 * 145.02735 * 22 21 12 39 39 H 1.08995 * 117.50373 * 214.97889 * 23 21 12 40 40 H 1.09000 * 117.50381 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 0.0061 5 6 4.7899 1.5008 0.0087 6 6 3.6143 -0.7154 0.0091 7 6 2.3272 -1.1330 0.0057 8 6 1.8600 -2.5657 0.0079 9 6 1.5862 -3.0151 -1.4287 10 6 1.1184 -4.4476 -1.4264 11 8 1.0138 -5.0498 -0.3788 12 7 0.8162 -5.0597 -2.5886 13 6 0.3911 -6.3631 -2.5866 14 1 0.7913 -7.0627 -3.3055 15 6 -0.5546 -6.7840 -1.6596 16 7 -1.2968 -5.9006 -1.0307 17 14 -0.7710 -8.6058 -1.3076 18 1 0.5059 -9.1663 -0.7971 19 1 -1.8354 -8.7900 -0.2886 20 1 -1.1559 -9.3092 -2.5574 21 6 0.9420 -4.3322 -3.8540 22 6 0.5113 -5.0564 -5.1310 23 6 1.9972 -4.8212 -4.8481 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 5.0787 1.7184 1.0370 28 1 5.6114 0.9970 -0.5005 29 1 4.5584 2.4320 -0.5086 30 1 4.4891 -1.3485 0.0143 31 1 2.6317 -3.1989 0.4458 32 1 0.9454 -2.6488 0.5952 33 1 0.8144 -2.3819 -1.8666 34 1 2.5007 -2.9320 -2.0159 35 1 -2.0061 -6.1963 -0.4388 36 1 0.7617 -3.2586 -3.7990 37 1 0.1340 -6.0739 -5.0297 38 1 0.0480 -4.4592 -5.9164 39 1 2.5108 -4.0696 -5.4474 40 1 2.5981 -5.6840 -4.5605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328420746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:42 Heat of formation + Delta-G solvation = 73.799981 kcal Electronic energy + Delta-G solvation = -21608.545650 eV Core-core repulsion = 18426.420267 eV Total energy + Delta-G solvation = -3182.125383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.08466 -38.48403 -36.09504 -34.33871 -32.95206 -32.24063 -30.81429 -29.77330 -28.61377 -25.94309 -24.72010 -22.86885 -21.63933 -21.02961 -20.48009 -19.34693 -18.78048 -16.63440 -16.10106 -15.95352 -15.42199 -14.71983 -14.53213 -14.16153 -13.89830 -13.77032 -13.45833 -13.21837 -12.93661 -12.54206 -12.28142 -12.13340 -11.91686 -11.80637 -11.68311 -11.19431 -10.95168 -10.80676 -10.80457 -10.66293 -10.31963 -10.18881 -9.99727 -9.89009 -9.66635 -9.04636 -8.63466 -8.16293 -7.81487 -6.92888 -6.03495 -3.78739 2.01290 2.61195 2.95581 3.34491 3.41362 3.44742 4.23551 4.34818 4.52069 4.85353 4.94219 4.95734 5.01965 5.10347 5.25232 5.35498 5.45840 5.59486 5.65117 5.70060 5.81913 5.84754 5.93507 6.01186 6.11591 6.17387 6.22395 6.26621 6.31694 6.36324 6.58534 6.77337 6.81165 6.87650 6.97389 6.99368 7.17774 7.68580 7.88847 8.36000 9.16271 9.26365 9.76519 10.41445 11.05834 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.004644 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.901411 B = 6028.142399 C = 6590.881412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.081 3.919 3 N -0.306 5.306 4 N -0.385 5.385 5 C 0.107 3.893 6 C 0.048 3.952 7 C -0.218 4.218 8 C -0.022 4.022 9 C -0.123 4.123 10 C 0.484 3.516 11 O -0.535 6.535 12 N -0.431 5.431 13 C -0.350 4.350 14 H 0.074 0.926 15 C 0.075 3.925 16 N -0.834 5.834 17 Si 0.911 3.089 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.279 1.279 21 C 0.079 3.921 22 C -0.175 4.175 23 C -0.209 4.209 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.171 0.829 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.263 0.737 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.495 11.824 -1.536 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 N -0.129 5.129 4 N -0.168 5.168 5 C -0.035 4.035 6 C -0.096 4.096 7 C -0.229 4.229 8 C -0.061 4.061 9 C -0.164 4.164 10 C 0.272 3.728 11 O -0.413 6.413 12 N -0.153 5.153 13 C -0.476 4.476 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.468 5.468 17 Si 0.739 3.261 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.205 1.205 21 C -0.028 4.028 22 C -0.213 4.213 23 C -0.248 4.248 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.188 0.812 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.509 12.907 -0.767 15.478 hybrid contribution -0.022 -1.614 -0.038 1.615 sum 8.487 11.293 -0.805 14.150 Atomic orbital electron populations 1.20207 0.86678 1.03279 1.03151 1.22293 0.96914 0.90320 0.99015 1.77229 0.86424 1.22883 1.26381 1.48263 1.05355 1.04734 1.58438 1.21746 0.83910 0.94919 1.02909 1.22319 0.99399 0.84597 1.03303 1.20247 0.91569 0.96958 1.14113 1.19577 1.01831 0.88227 0.96416 1.21555 1.01152 0.96246 0.97431 1.19896 0.80799 0.87668 0.84426 1.90511 1.53698 1.66587 1.30477 1.42800 1.59511 1.11190 1.01776 1.18777 1.23976 0.84418 1.20473 0.90837 1.25211 0.94017 0.98202 0.96117 1.69806 1.16300 1.34159 1.26485 0.86304 0.77874 0.84122 0.77847 1.20029 1.21234 1.20497 1.21676 1.01791 0.94960 0.84350 1.23059 0.96424 1.03270 0.98524 1.23310 0.92551 1.03707 1.05278 0.90466 0.89856 0.91368 0.91216 0.89746 0.89679 0.81169 0.91267 0.90580 0.91048 0.91278 0.92652 0.88081 0.87552 0.89938 0.89981 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.26 36.01 0.37 -0.65 16 2 C 0.08 1.28 7.22 -82.40 -0.59 0.68 16 3 N -0.31 -4.83 12.58 33.67 0.42 -4.41 16 4 N -0.39 -5.10 4.01 -68.16 -0.27 -5.37 16 5 C 0.11 0.86 11.47 59.85 0.69 1.55 16 6 C 0.05 0.66 11.40 -17.22 -0.20 0.46 16 7 C -0.22 -3.45 5.35 -105.05 -0.56 -4.01 16 8 C -0.02 -0.39 4.76 -27.89 -0.13 -0.52 16 9 C -0.12 -2.38 4.30 -27.89 -0.12 -2.50 16 10 C 0.48 12.19 6.96 -10.99 -0.08 12.12 16 11 O -0.53 -15.57 13.75 5.55 0.08 -15.49 16 12 N -0.43 -10.84 2.83 -107.73 -0.31 -11.15 16 13 C -0.35 -9.60 7.91 -14.93 -0.12 -9.72 16 14 H 0.07 1.96 7.27 -52.48 -0.38 1.58 16 15 C 0.07 2.12 4.39 -17.47 -0.08 2.04 16 16 N -0.83 -24.73 11.74 55.50 0.65 -24.08 16 17 Si 0.91 22.08 29.59 -169.99 -5.03 17.05 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.08 1.60 5.87 -67.93 -0.40 1.20 16 22 C -0.18 -3.22 9.80 -26.69 -0.26 -3.48 16 23 C -0.21 -3.64 10.36 -26.69 -0.28 -3.91 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.08 1.17 7.36 -51.93 -0.38 0.79 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.17 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.07 1.27 8.10 -51.92 -0.42 0.84 16 32 H 0.08 1.50 7.37 -51.92 -0.38 1.11 16 33 H 0.07 1.34 7.57 -51.92 -0.39 0.94 16 34 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 35 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 36 H 0.10 1.86 6.96 -51.93 -0.36 1.50 16 37 H 0.11 2.16 6.73 -51.93 -0.35 1.81 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -34.77 336.86 -7.17 -41.94 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.03 Total: 3.18 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.76 Total: -6.75 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.50 Total: -45.00 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.08 Total: -15.49 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.77 -7.17 -41.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328420746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.741 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds