Wall clock time and date at job start Mon Mar 30 2020 02:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30838 * 125.89740 * 2 1 4 4 N 1.40088 * 108.20323 * 179.73823 * 3 2 1 5 5 C 1.46502 * 126.03457 * 180.02562 * 4 3 2 6 6 C 1.34948 * 107.92740 * 0.02562 * 4 3 2 7 7 C 1.35315 * 107.74561 * 359.97438 * 6 4 3 8 8 C 1.50695 * 126.03976 * 180.02562 * 7 6 4 9 9 C 1.52993 * 109.47460 * 264.94718 * 8 7 6 10 10 C 1.50695 * 109.47460 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00280 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99829 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99588 * 179.97438 * 12 10 9 14 14 H 1.08006 * 119.99739 * 224.48136 * 13 12 10 15 15 C 1.38952 * 120.00059 * 44.48813 * 13 12 10 16 16 N 1.31400 * 120.00327 * 17.98688 * 15 13 12 17 17 Si 1.86807 * 119.99627 * 197.98362 * 15 13 12 18 18 H 1.48494 * 109.47051 * 60.00373 * 17 15 13 19 19 H 1.48506 * 109.46810 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47511 * 299.99923 * 17 15 13 21 21 C 1.46501 * 120.00220 * 359.97438 * 12 10 9 22 22 C 1.53000 * 117.49739 * 183.27224 * 21 12 10 23 23 C 1.52999 * 117.49523 * 114.61323 * 21 12 10 24 24 H 1.08997 * 109.47031 * 90.02509 * 1 2 3 25 25 H 1.09000 * 109.46759 * 210.02131 * 1 2 3 26 26 H 1.08996 * 109.46786 * 330.02037 * 1 2 3 27 27 H 1.09003 * 109.47124 * 89.97619 * 5 4 3 28 28 H 1.08993 * 109.47240 * 209.97775 * 5 4 3 29 29 H 1.09003 * 109.47032 * 329.97600 * 5 4 3 30 30 H 1.07992 * 126.12539 * 180.02562 * 6 4 3 31 31 H 1.09008 * 109.47090 * 24.94907 * 8 7 6 32 32 H 1.09008 * 109.47340 * 144.94594 * 8 7 6 33 33 H 1.09008 * 109.47123 * 300.00168 * 9 8 7 34 34 H 1.09000 * 109.46996 * 59.99299 * 9 8 7 35 35 H 0.97004 * 120.00746 * 174.95625 * 16 15 13 36 36 H 1.08994 * 115.55110 * 328.94833 * 21 12 10 37 37 H 1.08994 * 117.49810 * 0.02562 * 22 21 12 38 38 H 1.08997 * 117.49478 * 145.02735 * 22 21 12 39 39 H 1.08995 * 117.50373 * 214.97889 * 23 21 12 40 40 H 1.09000 * 117.50381 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 0.0061 5 6 4.7899 1.5008 0.0087 6 6 3.6143 -0.7154 0.0091 7 6 2.3272 -1.1330 0.0057 8 6 1.8600 -2.5657 0.0079 9 6 1.5862 -3.0151 -1.4287 10 6 1.1184 -4.4476 -1.4264 11 8 1.0138 -5.0498 -0.3788 12 7 0.8162 -5.0597 -2.5886 13 6 0.3911 -6.3631 -2.5866 14 1 0.7913 -7.0627 -3.3055 15 6 -0.5546 -6.7840 -1.6596 16 7 -1.2968 -5.9006 -1.0307 17 14 -0.7710 -8.6058 -1.3076 18 1 0.5059 -9.1663 -0.7971 19 1 -1.8354 -8.7900 -0.2886 20 1 -1.1559 -9.3092 -2.5574 21 6 0.9420 -4.3322 -3.8540 22 6 0.5113 -5.0564 -5.1310 23 6 1.9972 -4.8212 -4.8481 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 5.0787 1.7184 1.0370 28 1 5.6114 0.9970 -0.5005 29 1 4.5584 2.4320 -0.5086 30 1 4.4891 -1.3485 0.0143 31 1 2.6317 -3.1989 0.4458 32 1 0.9454 -2.6488 0.5952 33 1 0.8144 -2.3819 -1.8666 34 1 2.5007 -2.9320 -2.0159 35 1 -2.0061 -6.1963 -0.4388 36 1 0.7617 -3.2586 -3.7990 37 1 0.1340 -6.0739 -5.0297 38 1 0.0480 -4.4592 -5.9164 39 1 2.5108 -4.0696 -5.4474 40 1 2.5981 -5.6840 -4.5605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328420746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:41 Heat of formation + Delta-G solvation = 52.186763 kcal Electronic energy + Delta-G solvation = -21609.482870 eV Core-core repulsion = 18426.420267 eV Total energy + Delta-G solvation = -3183.062603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.17453 -40.30764 -37.78209 -35.56142 -34.71355 -33.71546 -32.72144 -30.79220 -29.88171 -27.48393 -26.13782 -24.31723 -23.07116 -22.68042 -21.61356 -20.87764 -20.22119 -18.25285 -17.76088 -17.34763 -16.61772 -16.42853 -16.12525 -15.82349 -15.38832 -15.10099 -14.59943 -14.37280 -14.26542 -13.86669 -13.72696 -13.57487 -13.17102 -12.99532 -12.93746 -12.78291 -12.71963 -12.65993 -12.45513 -12.20014 -12.06968 -11.84043 -11.58990 -11.32468 -11.17398 -10.66497 -10.11436 -9.88274 -9.19106 -8.88924 -8.14185 -5.92404 0.95318 1.38289 1.46848 1.50192 1.72179 1.77716 2.31572 2.49422 3.15531 3.20882 3.41997 3.62991 3.95548 4.11043 4.17737 4.23706 4.31911 4.34091 4.46123 4.47818 4.49325 4.54912 4.71872 4.73571 4.79151 4.84230 4.90817 4.91884 5.05937 5.10882 5.14405 5.33798 5.38171 5.45226 5.49743 5.54413 5.77889 6.20900 6.26561 6.78907 7.11161 7.28836 7.79089 8.46350 8.94527 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.004644 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.901411 B = 6028.142399 C = 6590.881412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.067 3.933 3 N -0.330 5.330 4 N -0.381 5.381 5 C 0.095 3.905 6 C 0.065 3.935 7 C -0.246 4.246 8 C -0.006 4.006 9 C -0.104 4.104 10 C 0.468 3.532 11 O -0.587 6.587 12 N -0.447 5.447 13 C -0.358 4.358 14 H 0.074 0.926 15 C 0.023 3.977 16 N -0.871 5.871 17 Si 0.968 3.032 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.258 1.258 21 C 0.046 3.954 22 C -0.173 4.173 23 C -0.179 4.179 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.204 0.796 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.258 0.742 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.503 13.038 -3.153 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 N -0.155 5.155 4 N -0.162 5.162 5 C -0.044 4.044 6 C -0.082 4.082 7 C -0.258 4.258 8 C -0.045 4.045 9 C -0.144 4.144 10 C 0.258 3.742 11 O -0.469 6.469 12 N -0.168 5.168 13 C -0.486 4.486 14 H 0.092 0.908 15 C -0.183 4.183 16 N -0.506 5.506 17 Si 0.793 3.207 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.182 1.182 21 C -0.059 4.059 22 C -0.210 4.210 23 C -0.218 4.218 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.221 0.779 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.531 14.149 -2.442 17.806 hybrid contribution -0.515 -1.933 0.405 2.041 sum 10.016 12.216 -2.037 15.928 Atomic orbital electron populations 1.20206 0.86231 1.03280 1.03482 1.22496 0.97614 0.90433 0.99271 1.77173 0.87800 1.23155 1.27336 1.48690 1.05657 1.05257 1.56633 1.22186 0.82819 0.94894 1.04518 1.22747 0.99510 0.85131 1.00781 1.20051 0.92924 0.95495 1.17305 1.19280 1.00284 0.89899 0.95006 1.21415 1.01977 0.92187 0.98820 1.20889 0.79901 0.89669 0.83781 1.90466 1.55839 1.68302 1.32291 1.43043 1.59022 1.11014 1.03717 1.19034 1.23309 0.86109 1.20103 0.90820 1.26016 0.94101 1.02018 0.96152 1.69923 1.17217 1.35836 1.27670 0.85416 0.77221 0.79763 0.78310 1.20752 1.21354 1.18226 1.21977 1.05165 0.95765 0.82963 1.23106 0.97669 1.02102 0.98128 1.23315 0.91802 1.03580 1.03116 0.89941 0.91084 0.90101 0.89695 0.86676 0.89093 0.77909 0.92079 0.93465 0.90426 0.88878 0.93248 0.86052 0.90153 0.86669 0.85899 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.03 10.26 71.24 0.73 -1.30 16 2 C 0.07 2.08 7.22 43.10 0.31 2.39 16 3 N -0.33 -9.95 12.58 -47.38 -0.60 -10.54 16 4 N -0.38 -9.03 4.01 -369.57 -1.48 -10.51 16 5 C 0.10 1.20 11.47 127.77 1.47 2.66 16 6 C 0.06 1.59 11.40 83.54 0.95 2.54 16 7 C -0.25 -7.59 5.35 -20.14 -0.11 -7.69 16 8 C -0.01 -0.20 4.76 29.84 0.14 -0.06 16 9 C -0.10 -3.97 4.30 29.84 0.13 -3.84 16 10 C 0.47 24.02 6.96 87.65 0.61 24.63 16 11 O -0.59 -35.55 13.75 -3.05 -0.04 -35.60 16 12 N -0.45 -22.62 2.83 -613.14 -1.74 -24.36 16 13 C -0.36 -19.99 7.91 84.04 0.66 -19.32 16 14 H 0.07 3.99 7.27 -2.91 -0.02 3.97 16 15 C 0.02 1.34 4.39 84.93 0.37 1.72 16 16 N -0.87 -53.51 11.74 21.66 0.25 -53.26 16 17 Si 0.97 46.28 29.59 68.60 2.03 48.31 16 18 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 C 0.05 1.81 5.87 44.99 0.26 2.07 16 22 C -0.17 -5.97 9.80 30.62 0.30 -5.67 16 23 C -0.18 -5.69 10.36 30.62 0.32 -5.37 16 24 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 2.10 7.36 -2.39 -0.02 2.09 16 26 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.06 2.27 8.10 -2.38 -0.02 2.25 16 32 H 0.05 1.96 7.37 -2.38 -0.02 1.94 16 33 H 0.08 2.87 7.57 -2.38 -0.02 2.85 16 34 H 0.09 3.10 8.11 -2.39 -0.02 3.08 16 35 H 0.26 15.35 8.32 -92.71 -0.77 14.58 16 36 H 0.12 4.19 6.96 -2.39 -0.02 4.17 16 37 H 0.08 3.22 6.73 -2.39 -0.02 3.20 16 38 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -78.33 336.86 5.60 -72.72 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 1.03 Total: 20.48 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 6.15 Total: -7.26 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -3.56 Total: -98.67 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.04 Total: -35.60 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -78.33 5.60 -72.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328420746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.909 kcal (2) G-P(sol) polarization free energy of solvation -78.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds