Wall clock time and date at job start Mon Mar 30 2020 01:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38115 * 120.40167 * 2 1 4 4 C 1.39626 * 118.33577 * 180.02562 * 3 2 1 5 5 N 1.38539 * 120.53246 * 179.97438 * 4 3 2 6 6 C 1.46845 * 111.00323 * 303.95736 * 5 4 3 7 7 C 1.53034 * 109.52662 * 174.15796 * 6 5 4 8 8 C 1.53121 * 109.27653 * 59.18031 * 7 6 5 9 9 C 1.53124 * 109.16108 * 302.34293 * 8 7 6 10 10 H 1.08998 * 109.50166 * 297.67663 * 9 8 7 11 11 C 1.50701 * 109.50158 * 177.59378 * 9 8 7 12 12 H 1.08002 * 119.99761 * 240.07651 * 11 9 8 13 13 C 1.37871 * 119.99694 * 60.36214 * 11 9 8 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 9 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 9 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.46852 * 110.99765 * 179.70178 * 5 4 3 20 20 N 1.32992 * 118.93839 * 0.25579 * 4 3 2 21 21 C 1.31753 * 120.68206 * 359.49053 * 20 4 3 22 22 C 1.50696 * 119.08313 * 180.26258 * 21 20 4 23 23 O 1.42898 * 109.47542 * 270.25401 * 22 21 20 24 24 N 1.31787 * 121.83118 * 0.52129 * 21 20 4 25 25 H 1.09002 * 109.46927 * 89.99826 * 1 2 3 26 26 H 1.08998 * 109.46651 * 209.99359 * 1 2 3 27 27 H 1.08997 * 109.47128 * 329.99748 * 1 2 3 28 28 H 1.08000 * 120.83315 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.46148 * 54.14003 * 6 5 4 30 30 H 1.09004 * 109.46123 * 294.17956 * 6 5 4 31 31 H 1.09000 * 109.50557 * 299.24044 * 7 6 5 32 32 H 1.09001 * 109.50809 * 179.12036 * 7 6 5 33 33 H 1.09007 * 109.52292 * 182.44492 * 8 7 6 34 34 H 1.08997 * 109.57534 * 62.28174 * 8 7 6 35 35 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.42321 * 65.80641 * 19 5 4 37 37 H 1.08995 * 109.49687 * 305.84356 * 19 5 4 38 38 H 1.09007 * 109.47392 * 30.25275 * 22 21 20 39 39 H 1.09002 * 109.47704 * 150.24901 * 22 21 20 40 40 H 0.96693 * 114.00482 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6013 1.1409 -0.0005 5 7 4.3477 2.3081 -0.0011 6 6 3.9856 3.1638 -1.1382 7 6 4.7208 4.5013 -1.0263 8 6 6.2310 4.2486 -1.0142 9 6 6.5752 3.3160 0.1506 10 1 6.3122 3.7978 1.0923 11 6 8.0517 3.0148 0.1344 12 1 8.3937 1.9954 0.0325 13 6 8.9657 4.0398 0.2558 14 7 8.5492 5.2810 0.3800 15 14 10.7958 3.6655 0.2436 16 1 11.1587 3.0112 -1.0391 17 1 11.5606 4.9303 0.3873 18 1 11.1229 2.7578 1.3724 19 6 5.7862 2.0128 0.0055 20 7 4.2024 -0.0454 -0.0062 21 6 3.4956 -1.1573 -0.0012 22 6 4.2140 -2.4819 -0.0019 23 8 4.4406 -2.9003 -1.3494 24 7 2.1778 -1.1432 -0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5139 28 1 1.6862 2.1380 0.0004 29 1 2.9098 3.3391 -1.1328 30 1 4.2683 2.6706 -2.0683 31 1 4.4281 5.0013 -0.1031 32 1 4.4640 5.1302 -1.8787 33 1 6.7577 5.1949 -0.8909 34 1 6.5311 3.7842 -1.9535 35 1 9.1923 6.0021 0.4657 36 1 6.0603 1.5244 -0.9296 37 1 6.0182 1.3528 0.8413 38 1 5.1699 -2.3772 0.5116 39 1 3.6052 -3.2259 0.5120 40 1 4.9005 -3.7474 -1.4262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328572093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:26 Heat of formation + Delta-G solvation = -0.512058 kcal Electronic energy + Delta-G solvation = -21743.520426 eV Core-core repulsion = 18558.172631 eV Total energy + Delta-G solvation = -3185.347795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.10546 -38.46773 -36.80554 -34.61933 -33.75984 -32.34798 -30.51018 -30.10994 -28.52974 -27.24804 -25.01450 -24.12793 -22.30210 -21.41701 -21.06490 -18.87809 -17.62822 -17.46963 -16.91059 -15.98663 -15.28909 -14.98323 -14.85750 -14.46318 -14.31275 -13.95486 -13.73928 -13.35245 -13.09129 -12.71403 -12.61846 -12.50476 -12.31436 -12.12501 -11.77830 -10.95990 -10.90134 -10.73805 -10.64311 -10.37557 -10.22378 -10.20268 -9.93648 -9.61836 -9.49545 -9.19807 -9.06367 -8.75650 -8.33824 -8.00420 -6.00323 -4.06127 1.03333 1.31927 3.32605 3.36798 3.39637 3.47029 3.91086 3.95349 4.25811 4.45250 4.75836 4.94220 5.06458 5.23128 5.28755 5.30191 5.35824 5.40211 5.43310 5.54841 5.57910 5.77876 5.82731 5.84825 6.01209 6.33162 6.36591 6.48939 6.51775 6.67380 6.83193 6.90569 7.16156 7.31300 7.44803 7.51226 7.59780 7.72765 7.99049 8.09564 8.35324 8.43895 8.96928 9.58362 11.06120 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.004878 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.121890 B = 5738.106679 C = 6822.373474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.181 3.819 3 C -0.248 4.248 4 C 0.369 3.631 5 N -0.471 5.471 6 C 0.069 3.931 7 C -0.119 4.119 8 C -0.115 4.115 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.513 4.513 12 H 0.056 0.944 13 C 0.064 3.936 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.077 3.923 20 N -0.539 5.539 21 C 0.342 3.658 22 C 0.151 3.849 23 O -0.563 6.563 24 N -0.538 5.538 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.469 -9.514 -1.641 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.038 3.962 3 C -0.274 4.274 4 C 0.129 3.871 5 N -0.186 5.186 6 C -0.056 4.056 7 C -0.157 4.157 8 C -0.153 4.153 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.552 4.552 12 H 0.074 0.926 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.048 4.048 20 N -0.261 5.261 21 C 0.071 3.929 22 C 0.071 3.929 23 O -0.367 6.367 24 N -0.258 5.258 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.163 0.837 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -13.284 -9.258 -1.346 16.248 hybrid contribution 1.076 -0.152 -0.346 1.141 sum -12.208 -9.411 -1.692 15.507 Atomic orbital electron populations 1.20714 0.88036 1.03716 1.03365 1.21421 0.97185 0.87744 0.89897 1.22192 0.94133 1.00577 1.10510 1.20389 0.90434 0.89030 0.87269 1.58889 1.09436 1.10440 1.39882 1.22246 0.99660 0.94503 0.89241 1.21745 0.98852 0.93829 1.01252 1.21725 0.90966 1.03874 0.98690 1.18765 0.93453 0.89269 0.95275 0.94759 1.21048 0.90461 0.93439 1.50248 0.92623 1.24917 0.98806 0.95041 0.94979 1.69867 1.34066 0.98941 1.49976 0.86651 0.85193 0.77487 0.78625 1.20297 1.21315 1.20258 1.22360 0.80767 1.00610 1.01063 1.68281 1.41463 0.98047 1.18315 1.22444 0.86390 0.93285 0.90739 1.20551 0.98286 0.89494 0.84561 1.86505 1.81616 1.43160 1.25465 1.67982 1.09370 1.30286 1.18170 0.89990 0.90168 0.90281 0.83726 0.91184 0.93997 0.91617 0.92438 0.88625 0.94699 0.92951 0.94095 0.90894 0.90754 0.91060 0.76713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.21 36.01 0.37 -0.58 16 2 C 0.18 2.55 6.82 -82.33 -0.56 1.99 16 3 C -0.25 -3.75 8.95 -39.11 -0.35 -4.10 16 4 C 0.37 6.79 6.40 -154.78 -0.99 5.80 16 5 N -0.47 -9.17 4.68 -173.05 -0.81 -9.98 16 6 C 0.07 1.19 5.26 -3.84 -0.02 1.17 16 7 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 8 C -0.11 -2.64 5.03 -26.60 -0.13 -2.77 16 9 C 0.05 1.28 2.26 -91.69 -0.21 1.07 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.51 -14.08 8.56 -34.44 -0.29 -14.38 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.76 5.31 -17.82 -0.09 1.66 16 14 N -0.89 -25.06 11.36 55.43 0.63 -24.43 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.08 1.72 3.89 -3.83 -0.01 1.71 16 20 N -0.54 -10.28 8.75 -9.97 -0.09 -10.36 16 21 C 0.34 5.79 7.27 -157.24 -1.14 4.64 16 22 C 0.15 1.97 7.48 36.00 0.27 2.24 16 23 O -0.56 -7.36 13.64 -35.23 -0.48 -7.84 16 24 N -0.54 -8.60 10.27 -7.07 -0.07 -8.67 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.14 1.82 7.24 -52.49 -0.38 1.44 16 29 H 0.07 1.00 6.76 -51.93 -0.35 0.65 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 2.45 6.17 -51.93 -0.32 2.13 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 37 H 0.07 1.70 7.74 -51.93 -0.40 1.30 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.39 2.74 9.12 45.56 0.42 3.16 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -32.14 325.65 -9.50 -41.64 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.23 Total: 2.41 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -3.34 Total: -3.90 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.34 Total: -53.44 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.48 Total: -7.84 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.14 -9.50 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328572093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.125 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds