Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38115 * 120.40167 * 2 1 4 4 C 1.39626 * 118.33577 * 180.02562 * 3 2 1 5 5 N 1.38539 * 120.53246 * 179.97438 * 4 3 2 6 6 C 1.46845 * 111.00323 * 303.95736 * 5 4 3 7 7 C 1.53034 * 109.52662 * 174.15796 * 6 5 4 8 8 C 1.53121 * 109.27653 * 59.18031 * 7 6 5 9 9 C 1.53124 * 109.16108 * 302.34293 * 8 7 6 10 10 H 1.08998 * 109.50166 * 297.67663 * 9 8 7 11 11 C 1.50701 * 109.50158 * 177.59378 * 9 8 7 12 12 H 1.08002 * 119.99761 * 240.07651 * 11 9 8 13 13 C 1.37871 * 119.99694 * 60.36214 * 11 9 8 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 9 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 9 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.46852 * 110.99765 * 179.70178 * 5 4 3 20 20 N 1.32992 * 118.93839 * 0.25579 * 4 3 2 21 21 C 1.31753 * 120.68206 * 359.49053 * 20 4 3 22 22 C 1.50696 * 119.08313 * 180.26258 * 21 20 4 23 23 O 1.42898 * 109.47542 * 270.25401 * 22 21 20 24 24 N 1.31787 * 121.83118 * 0.52129 * 21 20 4 25 25 H 1.09002 * 109.46927 * 89.99826 * 1 2 3 26 26 H 1.08998 * 109.46651 * 209.99359 * 1 2 3 27 27 H 1.08997 * 109.47128 * 329.99748 * 1 2 3 28 28 H 1.08000 * 120.83315 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.46148 * 54.14003 * 6 5 4 30 30 H 1.09004 * 109.46123 * 294.17956 * 6 5 4 31 31 H 1.09000 * 109.50557 * 299.24044 * 7 6 5 32 32 H 1.09001 * 109.50809 * 179.12036 * 7 6 5 33 33 H 1.09007 * 109.52292 * 182.44492 * 8 7 6 34 34 H 1.08997 * 109.57534 * 62.28174 * 8 7 6 35 35 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.42321 * 65.80641 * 19 5 4 37 37 H 1.08995 * 109.49687 * 305.84356 * 19 5 4 38 38 H 1.09007 * 109.47392 * 30.25275 * 22 21 20 39 39 H 1.09002 * 109.47704 * 150.24901 * 22 21 20 40 40 H 0.96693 * 114.00482 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6013 1.1409 -0.0005 5 7 4.3477 2.3081 -0.0011 6 6 3.9856 3.1638 -1.1382 7 6 4.7208 4.5013 -1.0263 8 6 6.2310 4.2486 -1.0142 9 6 6.5752 3.3160 0.1506 10 1 6.3122 3.7978 1.0923 11 6 8.0517 3.0148 0.1344 12 1 8.3937 1.9954 0.0325 13 6 8.9657 4.0398 0.2558 14 7 8.5492 5.2810 0.3800 15 14 10.7958 3.6655 0.2436 16 1 11.1587 3.0112 -1.0391 17 1 11.5606 4.9303 0.3873 18 1 11.1229 2.7578 1.3724 19 6 5.7862 2.0128 0.0055 20 7 4.2024 -0.0454 -0.0062 21 6 3.4956 -1.1573 -0.0012 22 6 4.2140 -2.4819 -0.0019 23 8 4.4406 -2.9003 -1.3494 24 7 2.1778 -1.1432 -0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5139 28 1 1.6862 2.1380 0.0004 29 1 2.9098 3.3391 -1.1328 30 1 4.2683 2.6706 -2.0683 31 1 4.4281 5.0013 -0.1031 32 1 4.4640 5.1302 -1.8787 33 1 6.7577 5.1949 -0.8909 34 1 6.5311 3.7842 -1.9535 35 1 9.1923 6.0021 0.4657 36 1 6.0603 1.5244 -0.9296 37 1 6.0182 1.3528 0.8413 38 1 5.1699 -2.3772 0.5116 39 1 3.6052 -3.2259 0.5120 40 1 4.9005 -3.7474 -1.4262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328572093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = -23.530568 kcal Electronic energy + Delta-G solvation = -21744.518584 eV Core-core repulsion = 18558.172631 eV Total energy + Delta-G solvation = -3186.345953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.36425 -39.97670 -37.81938 -36.20977 -35.09880 -34.00944 -31.99199 -31.84251 -29.50180 -28.42790 -26.92294 -25.67613 -23.73542 -22.69739 -22.56812 -20.59620 -18.95916 -18.60805 -18.44919 -17.71228 -16.55926 -16.44777 -16.26251 -15.95936 -15.54640 -15.23475 -15.16081 -14.79586 -14.50371 -14.21626 -14.10636 -13.76460 -13.57072 -13.14229 -13.00488 -12.87297 -12.74662 -12.58652 -11.98675 -11.91085 -11.84224 -11.66743 -11.40461 -11.14999 -11.08482 -10.82909 -10.66342 -10.41187 -10.29834 -9.45244 -8.11437 -6.25155 -0.16125 0.09200 1.40868 1.42062 1.49868 2.26159 2.42468 2.65985 2.84315 3.12583 3.15966 3.70423 3.83363 3.99766 4.03181 4.09131 4.23149 4.26376 4.29171 4.45302 4.48065 4.54745 4.59968 4.75909 4.77890 4.82791 4.88992 4.96938 5.01832 5.05681 5.21991 5.34620 5.46647 5.59266 5.60701 5.93719 6.06465 6.07627 6.20020 6.36841 6.81669 6.83518 7.13425 7.42423 8.93457 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.004878 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.121890 B = 5738.106679 C = 6822.373474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.180 3.820 3 C -0.242 4.242 4 C 0.341 3.659 5 N -0.478 5.478 6 C 0.071 3.929 7 C -0.109 4.109 8 C -0.108 4.108 9 C 0.052 3.948 10 H 0.001 0.999 11 C -0.540 4.540 12 H 0.046 0.954 13 C 0.020 3.980 14 N -0.912 5.912 15 Si 0.954 3.046 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.273 1.273 19 C 0.102 3.898 20 N -0.574 5.574 21 C 0.323 3.677 22 C 0.152 3.848 23 O -0.584 6.584 24 N -0.544 5.544 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.175 0.825 29 H 0.112 0.888 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.023 0.977 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.546 -10.039 -2.108 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.036 3.964 3 C -0.267 4.267 4 C 0.102 3.898 5 N -0.194 5.194 6 C -0.054 4.054 7 C -0.147 4.147 8 C -0.146 4.146 9 C 0.033 3.967 10 H 0.019 0.981 11 C -0.578 4.578 12 H 0.065 0.935 13 C -0.180 4.180 14 N -0.551 5.551 15 Si 0.779 3.221 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.199 1.199 19 C -0.024 4.024 20 N -0.297 5.297 21 C 0.053 3.947 22 C 0.073 3.927 23 O -0.393 6.393 24 N -0.263 5.263 25 H 0.118 0.882 26 H 0.105 0.895 27 H 0.122 0.878 28 H 0.192 0.808 29 H 0.130 0.870 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -15.374 -9.814 -1.817 18.330 hybrid contribution 1.650 -0.063 -0.202 1.663 sum -13.724 -9.876 -2.019 17.029 Atomic orbital electron populations 1.20872 0.84261 1.05328 1.04882 1.22265 0.99440 0.86861 0.87834 1.22476 0.92504 1.02372 1.09356 1.20611 0.91806 0.88460 0.88935 1.58919 1.07381 1.11774 1.41360 1.22333 1.01788 0.93019 0.88281 1.21638 0.95234 0.95295 1.02518 1.21521 0.94445 1.01566 0.97069 1.18663 0.92883 0.90729 0.94440 0.98066 1.21376 0.92299 0.93231 1.50895 0.93530 1.25649 1.02971 0.94855 0.94488 1.69992 1.35350 0.99561 1.50161 0.85681 0.80108 0.77547 0.78735 1.19777 1.20492 1.19851 1.21807 0.83131 0.98337 0.99139 1.68240 1.42895 0.99039 1.19559 1.23126 0.87159 0.93920 0.90529 1.20635 0.98569 0.88684 0.84825 1.86435 1.82207 1.45094 1.25526 1.68124 1.08918 1.31215 1.18049 0.88236 0.89502 0.87769 0.80794 0.87042 0.94680 0.91845 0.89333 0.91461 0.95735 0.92836 0.95899 0.92872 0.90689 0.88437 0.73976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.21 71.24 0.73 -0.68 16 2 C 0.18 4.57 6.82 42.42 0.29 4.86 16 3 C -0.24 -6.69 8.95 22.58 0.20 -6.49 16 4 C 0.34 12.34 6.40 133.16 0.85 13.19 16 5 N -0.48 -18.63 4.68 -701.42 -3.28 -21.91 16 6 C 0.07 2.33 5.26 86.33 0.45 2.78 16 7 C -0.11 -3.93 6.09 30.65 0.19 -3.74 16 8 C -0.11 -5.11 5.03 30.68 0.15 -4.96 16 9 C 0.05 2.71 2.26 -11.49 -0.03 2.68 16 10 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 11 C -0.54 -30.83 8.56 25.60 0.22 -30.62 16 12 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 13 C 0.02 1.11 5.31 84.65 0.45 1.56 16 14 N -0.91 -52.65 11.36 21.45 0.24 -52.40 16 15 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 C 0.10 4.78 3.89 86.33 0.34 5.12 16 20 N -0.57 -22.14 8.75 -185.44 -1.62 -23.77 16 21 C 0.32 10.75 7.27 138.76 1.01 11.76 16 22 C 0.15 3.88 7.48 71.23 0.53 4.42 16 23 O -0.58 -14.79 13.64 -148.98 -2.03 -16.83 16 24 N -0.54 -16.39 10.27 -176.29 -1.81 -18.20 16 25 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.04 8.09 -2.39 -0.02 1.02 16 28 H 0.17 3.63 7.24 -2.91 -0.02 3.61 16 29 H 0.11 2.77 6.76 -2.39 -0.02 2.76 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.07 3.57 6.17 -2.38 -0.01 3.55 16 34 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.02 1.12 8.12 -2.39 -0.02 1.10 16 37 H 0.05 2.63 7.74 -2.39 -0.02 2.61 16 38 H 0.08 1.84 8.14 -2.38 -0.02 1.83 16 39 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.41 5.35 9.12 -74.06 -0.68 4.68 16 Total: -1.00 -72.49 325.65 -0.72 -73.21 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.37 Total: 13.72 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.39 Total: -0.12 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -6.47 Total: -116.28 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -2.03 Total: -16.83 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -72.49 -0.72 -73.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328572093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.680 kcal (2) G-P(sol) polarization free energy of solvation -72.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds