Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38122 * 120.39924 * 2 1 4 4 C 1.39625 * 118.33029 * 179.97438 * 3 2 1 5 5 N 1.38544 * 120.52453 * 180.02562 * 4 3 2 6 6 C 1.46847 * 111.00162 * 56.04935 * 5 4 3 7 7 C 1.53038 * 109.52116 * 185.83434 * 6 5 4 8 8 C 1.53121 * 109.27914 * 300.81991 * 7 6 5 9 9 C 1.53112 * 109.15966 * 57.65463 * 8 7 6 10 10 H 1.08998 * 109.50420 * 62.28786 * 9 8 7 11 11 C 1.50701 * 109.50438 * 182.40095 * 9 8 7 12 12 H 1.08003 * 120.00117 * 119.99522 * 11 9 8 13 13 C 1.37878 * 120.00226 * 300.00491 * 11 9 8 14 14 N 1.31514 * 119.99782 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00038 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46926 * 90.00273 * 15 13 11 17 17 H 1.48499 * 109.47030 * 209.99870 * 15 13 11 18 18 H 1.48499 * 109.47220 * 329.99819 * 15 13 11 19 19 C 1.46853 * 110.99293 * 180.25509 * 5 4 3 20 20 N 1.32984 * 118.93817 * 0.02562 * 4 3 2 21 21 C 1.31753 * 120.69061 * 359.97438 * 20 4 3 22 22 C 1.50695 * 119.08574 * 180.02562 * 21 20 4 23 23 O 1.42898 * 109.47058 * 90.00459 * 22 21 20 24 24 N 1.31791 * 121.82901 * 0.03237 * 21 20 4 25 25 H 1.08996 * 109.47523 * 90.00029 * 1 2 3 26 26 H 1.09001 * 109.46789 * 210.00069 * 1 2 3 27 27 H 1.08999 * 109.47065 * 329.99418 * 1 2 3 28 28 H 1.07995 * 120.83076 * 0.25243 * 3 2 1 29 29 H 1.08998 * 109.46237 * 305.85403 * 6 5 4 30 30 H 1.09004 * 109.45977 * 65.82994 * 6 5 4 31 31 H 1.09001 * 109.50460 * 60.76210 * 7 6 5 32 32 H 1.09001 * 109.49945 * 180.87756 * 7 6 5 33 33 H 1.08996 * 109.52158 * 177.56197 * 8 7 6 34 34 H 1.09000 * 109.51923 * 297.68460 * 8 7 6 35 35 H 0.97002 * 119.99797 * 179.97438 * 14 13 11 36 36 H 1.08990 * 109.46566 * 294.17533 * 19 5 4 37 37 H 1.09002 * 109.46391 * 54.15113 * 19 5 4 38 38 H 1.08999 * 109.47485 * 210.00891 * 22 21 20 39 39 H 1.09001 * 109.47067 * 330.00472 * 22 21 20 40 40 H 0.96705 * 113.99881 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1409 0.0005 5 7 4.3476 2.3082 0.0011 6 6 3.9856 3.1638 1.1384 7 6 4.7208 4.5013 1.0265 8 6 6.2310 4.2485 1.0143 9 6 6.5750 3.3161 -0.1504 10 1 6.3115 3.7975 -1.0921 11 6 8.0515 3.0148 -0.1346 12 1 8.3936 1.9954 -0.0338 13 6 8.9657 4.0407 -0.2485 14 7 8.5492 5.2820 -0.3715 15 14 10.7959 3.6673 -0.2281 16 1 11.2673 3.4258 -1.6154 17 1 11.5301 4.8212 0.3504 18 1 11.0453 2.4580 0.5970 19 6 5.7861 2.0129 -0.0045 20 7 4.2023 -0.0454 0.0005 21 6 3.4956 -1.1573 0.0005 22 6 4.2140 -2.4819 0.0011 23 8 4.4405 -2.9004 1.3485 24 7 2.1777 -1.1432 -0.0001 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6862 2.1380 0.0041 29 1 2.9098 3.3391 1.1330 30 1 4.2685 2.6706 2.0684 31 1 4.4281 5.0014 0.1033 32 1 4.4639 5.1301 1.8790 33 1 6.7577 5.1948 0.8911 34 1 6.5302 3.7847 1.9542 35 1 9.1924 6.0037 -0.4512 36 1 6.0604 1.5252 0.9308 37 1 6.0181 1.3524 -0.8400 38 1 3.6052 -3.2258 -0.5129 39 1 5.1698 -2.3771 -0.5124 40 1 4.8997 -3.7480 1.4252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328572095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = -0.503445 kcal Electronic energy + Delta-G solvation = -21744.273501 eV Core-core repulsion = 18558.926079 eV Total energy + Delta-G solvation = -3185.347422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.10551 -38.46931 -36.80487 -34.62084 -33.76118 -32.34817 -30.51016 -30.11022 -28.52967 -27.24809 -25.01618 -24.12793 -22.30305 -21.41629 -21.06409 -18.88014 -17.62779 -17.47017 -16.91146 -15.98791 -15.29763 -14.98187 -14.85015 -14.45774 -14.31336 -13.96670 -13.72885 -13.34897 -13.10417 -12.71750 -12.61556 -12.50307 -12.31340 -12.12592 -11.78057 -10.98318 -10.89976 -10.70926 -10.65351 -10.37248 -10.21964 -10.20252 -9.93756 -9.62084 -9.49776 -9.19892 -9.06065 -8.75114 -8.34194 -8.00473 -6.00619 -4.06294 1.03439 1.31933 3.30811 3.37339 3.40859 3.46600 3.90907 3.96008 4.25868 4.45135 4.75618 4.94418 5.06440 5.23255 5.28412 5.29857 5.35846 5.39930 5.44109 5.54718 5.57522 5.77953 5.82692 5.84972 6.01152 6.33166 6.36553 6.48906 6.51733 6.67402 6.83112 6.90555 7.16011 7.31354 7.44775 7.51151 7.59720 7.72833 7.98925 8.09622 8.35320 8.43811 8.96968 9.58235 11.05812 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.004878 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.414537 B = 5738.141536 C = 6822.594799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.181 3.819 3 C -0.249 4.249 4 C 0.369 3.631 5 N -0.471 5.471 6 C 0.069 3.931 7 C -0.119 4.119 8 C -0.115 4.115 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.512 4.512 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.077 3.923 20 N -0.539 5.539 21 C 0.342 3.658 22 C 0.151 3.849 23 O -0.563 6.563 24 N -0.538 5.538 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.034 0.966 35 H 0.260 0.740 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.471 -9.535 1.626 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.038 3.962 3 C -0.274 4.274 4 C 0.129 3.871 5 N -0.186 5.186 6 C -0.057 4.057 7 C -0.157 4.157 8 C -0.153 4.153 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.551 4.551 12 H 0.074 0.926 13 C -0.138 4.138 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.048 4.048 20 N -0.261 5.261 21 C 0.072 3.928 22 C 0.071 3.929 23 O -0.367 6.367 24 N -0.258 5.258 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.163 0.837 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -13.286 -9.284 1.333 16.263 hybrid contribution 1.073 -0.136 0.320 1.128 sum -12.213 -9.420 1.653 15.512 Atomic orbital electron populations 1.20713 0.88038 1.03696 1.03383 1.21423 0.97185 0.87744 0.89887 1.22191 0.94132 1.00572 1.10544 1.20391 0.90436 0.89025 0.87264 1.58909 1.09427 1.10421 1.39862 1.22248 0.99661 0.94512 0.89247 1.21747 0.98856 0.93829 1.01251 1.21723 0.90970 1.03904 0.98668 1.18767 0.93475 0.89273 0.95273 0.94763 1.21088 0.90447 0.93427 1.50150 0.92568 1.24922 0.98819 0.95040 0.94997 1.69880 1.33940 0.98905 1.50117 0.86590 0.85321 0.77860 0.78219 1.20683 1.21261 1.19911 1.22362 0.80774 1.00615 1.01070 1.68269 1.41452 0.98042 1.18354 1.22443 0.86388 0.93282 0.90732 1.20550 0.98285 0.89489 0.84567 1.86509 1.81662 1.43111 1.25457 1.67986 1.09369 1.30278 1.18183 0.89930 0.90183 0.90330 0.83729 0.91184 0.93986 0.91623 0.92438 0.88594 0.94707 0.93014 0.94085 0.90889 0.91062 0.90751 0.76711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.21 36.01 0.37 -0.58 16 2 C 0.18 2.56 6.82 -82.33 -0.56 2.00 16 3 C -0.25 -3.75 8.95 -39.11 -0.35 -4.10 16 4 C 0.37 6.79 6.40 -154.78 -0.99 5.80 16 5 N -0.47 -9.16 4.68 -173.05 -0.81 -9.97 16 6 C 0.07 1.19 5.26 -3.83 -0.02 1.17 16 7 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 8 C -0.11 -2.64 5.02 -26.61 -0.13 -2.78 16 9 C 0.05 1.27 2.26 -91.69 -0.21 1.07 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 14 N -0.89 -25.05 11.35 55.43 0.63 -24.42 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 19 C 0.08 1.72 3.89 -3.83 -0.01 1.70 16 20 N -0.54 -10.28 8.75 -9.97 -0.09 -10.36 16 21 C 0.34 5.79 7.27 -157.23 -1.14 4.64 16 22 C 0.15 1.97 7.48 36.00 0.27 2.24 16 23 O -0.56 -7.36 13.64 -35.23 -0.48 -7.84 16 24 N -0.54 -8.60 10.27 -7.07 -0.07 -8.67 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.14 1.82 7.23 -52.49 -0.38 1.44 16 29 H 0.07 1.00 6.75 -51.93 -0.35 0.65 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.10 2.46 6.15 -51.93 -0.32 2.14 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 37 H 0.07 1.70 7.73 -51.93 -0.40 1.30 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.39 2.74 9.12 45.56 0.42 3.16 16 LS Contribution 325.60 15.07 4.91 4.91 Total: -1.00 -32.17 325.60 -9.50 -41.66 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.22 Total: 2.39 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.34 Total: -3.91 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.34 Total: -53.43 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.48 Total: -7.84 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.17 -9.50 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328572095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.161 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds