Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38122 * 120.39924 * 2 1 4 4 C 1.39625 * 118.33029 * 179.97438 * 3 2 1 5 5 N 1.38544 * 120.52453 * 180.02562 * 4 3 2 6 6 C 1.46847 * 111.00162 * 56.04935 * 5 4 3 7 7 C 1.53038 * 109.52116 * 185.83434 * 6 5 4 8 8 C 1.53121 * 109.27914 * 300.81991 * 7 6 5 9 9 C 1.53112 * 109.15966 * 57.65463 * 8 7 6 10 10 H 1.08998 * 109.50420 * 62.28786 * 9 8 7 11 11 C 1.50701 * 109.50438 * 182.40095 * 9 8 7 12 12 H 1.08003 * 120.00117 * 119.99522 * 11 9 8 13 13 C 1.37878 * 120.00226 * 300.00491 * 11 9 8 14 14 N 1.31514 * 119.99782 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00038 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46926 * 90.00273 * 15 13 11 17 17 H 1.48499 * 109.47030 * 209.99870 * 15 13 11 18 18 H 1.48499 * 109.47220 * 329.99819 * 15 13 11 19 19 C 1.46853 * 110.99293 * 180.25509 * 5 4 3 20 20 N 1.32984 * 118.93817 * 0.02562 * 4 3 2 21 21 C 1.31753 * 120.69061 * 359.97438 * 20 4 3 22 22 C 1.50695 * 119.08574 * 180.02562 * 21 20 4 23 23 O 1.42898 * 109.47058 * 90.00459 * 22 21 20 24 24 N 1.31791 * 121.82901 * 0.03237 * 21 20 4 25 25 H 1.08996 * 109.47523 * 90.00029 * 1 2 3 26 26 H 1.09001 * 109.46789 * 210.00069 * 1 2 3 27 27 H 1.08999 * 109.47065 * 329.99418 * 1 2 3 28 28 H 1.07995 * 120.83076 * 0.25243 * 3 2 1 29 29 H 1.08998 * 109.46237 * 305.85403 * 6 5 4 30 30 H 1.09004 * 109.45977 * 65.82994 * 6 5 4 31 31 H 1.09001 * 109.50460 * 60.76210 * 7 6 5 32 32 H 1.09001 * 109.49945 * 180.87756 * 7 6 5 33 33 H 1.08996 * 109.52158 * 177.56197 * 8 7 6 34 34 H 1.09000 * 109.51923 * 297.68460 * 8 7 6 35 35 H 0.97002 * 119.99797 * 179.97438 * 14 13 11 36 36 H 1.08990 * 109.46566 * 294.17533 * 19 5 4 37 37 H 1.09002 * 109.46391 * 54.15113 * 19 5 4 38 38 H 1.08999 * 109.47485 * 210.00891 * 22 21 20 39 39 H 1.09001 * 109.47067 * 330.00472 * 22 21 20 40 40 H 0.96705 * 113.99881 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1409 0.0005 5 7 4.3476 2.3082 0.0011 6 6 3.9856 3.1638 1.1384 7 6 4.7208 4.5013 1.0265 8 6 6.2310 4.2485 1.0143 9 6 6.5750 3.3161 -0.1504 10 1 6.3115 3.7975 -1.0921 11 6 8.0515 3.0148 -0.1346 12 1 8.3936 1.9954 -0.0338 13 6 8.9657 4.0407 -0.2485 14 7 8.5492 5.2820 -0.3715 15 14 10.7959 3.6673 -0.2281 16 1 11.2673 3.4258 -1.6154 17 1 11.5301 4.8212 0.3504 18 1 11.0453 2.4580 0.5970 19 6 5.7861 2.0129 -0.0045 20 7 4.2023 -0.0454 0.0005 21 6 3.4956 -1.1573 0.0005 22 6 4.2140 -2.4819 0.0011 23 8 4.4405 -2.9004 1.3485 24 7 2.1777 -1.1432 -0.0001 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6862 2.1380 0.0041 29 1 2.9098 3.3391 1.1330 30 1 4.2685 2.6706 2.0684 31 1 4.4281 5.0014 0.1033 32 1 4.4639 5.1301 1.8790 33 1 6.7577 5.1948 0.8911 34 1 6.5302 3.7847 1.9542 35 1 9.1924 6.0037 -0.4512 36 1 6.0604 1.5252 0.9308 37 1 6.0181 1.3524 -0.8400 38 1 3.6052 -3.2258 -0.5129 39 1 5.1698 -2.3771 -0.5124 40 1 4.8997 -3.7480 1.4252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328572095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = -23.551943 kcal Electronic energy + Delta-G solvation = -21745.272959 eV Core-core repulsion = 18558.926079 eV Total energy + Delta-G solvation = -3186.346879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.36425 -39.97816 -37.81901 -36.21155 -35.09988 -34.00913 -31.99194 -31.84255 -29.50163 -28.42840 -26.92456 -25.67588 -23.73624 -22.69639 -22.56738 -20.59799 -18.96023 -18.60800 -18.45070 -17.71421 -16.55709 -16.45406 -16.26015 -15.94999 -15.55570 -15.23586 -15.15896 -14.79024 -14.51070 -14.21651 -14.10722 -13.76451 -13.57292 -13.14518 -13.00353 -12.89167 -12.73959 -12.57043 -11.98988 -11.91627 -11.84559 -11.65918 -11.40786 -11.14997 -11.08448 -10.82664 -10.66092 -10.41594 -10.29622 -9.45257 -8.11723 -6.25324 -0.16011 0.09218 1.40317 1.40845 1.51396 2.25852 2.42267 2.65982 2.84693 3.12598 3.15734 3.70562 3.83331 3.99751 4.03154 4.09149 4.23146 4.26243 4.29108 4.45247 4.48073 4.54841 4.59967 4.76023 4.78134 4.82727 4.88807 4.96956 5.01865 5.05757 5.21932 5.34665 5.46667 5.59319 5.60727 5.93652 6.06403 6.07679 6.20074 6.36797 6.81580 6.83509 7.13460 7.42301 8.93317 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.004878 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.414537 B = 5738.141536 C = 6822.594799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.180 3.820 3 C -0.242 4.242 4 C 0.341 3.659 5 N -0.478 5.478 6 C 0.070 3.930 7 C -0.109 4.109 8 C -0.108 4.108 9 C 0.052 3.948 10 H 0.001 0.999 11 C -0.538 4.538 12 H 0.046 0.954 13 C 0.019 3.981 14 N -0.912 5.912 15 Si 0.954 3.046 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.272 1.272 19 C 0.102 3.898 20 N -0.575 5.575 21 C 0.323 3.677 22 C 0.152 3.848 23 O -0.584 6.584 24 N -0.544 5.544 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.175 0.825 29 H 0.112 0.888 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.023 0.977 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 -10.033 2.069 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.036 3.964 3 C -0.267 4.267 4 C 0.102 3.898 5 N -0.194 5.194 6 C -0.054 4.054 7 C -0.147 4.147 8 C -0.146 4.146 9 C 0.033 3.967 10 H 0.019 0.981 11 C -0.577 4.577 12 H 0.065 0.935 13 C -0.180 4.180 14 N -0.551 5.551 15 Si 0.780 3.220 16 H -0.201 1.201 17 H -0.204 1.204 18 H -0.196 1.196 19 C -0.024 4.024 20 N -0.297 5.297 21 C 0.053 3.947 22 C 0.073 3.927 23 O -0.393 6.393 24 N -0.263 5.263 25 H 0.119 0.881 26 H 0.103 0.897 27 H 0.123 0.877 28 H 0.192 0.808 29 H 0.130 0.870 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -15.379 -9.812 1.780 18.329 hybrid contribution 1.649 -0.054 0.179 1.659 sum -13.730 -9.866 1.958 17.020 Atomic orbital electron populations 1.20873 0.84262 1.05268 1.04945 1.22267 0.99440 0.86861 0.87824 1.22476 0.92502 1.02366 1.09389 1.20613 0.91809 0.88456 0.88930 1.58940 1.07368 1.11755 1.41343 1.22336 1.01797 0.93024 0.88286 1.21640 0.95239 0.95297 1.02515 1.21518 0.94451 1.01596 0.97055 1.18664 0.92893 0.90734 0.94443 0.98062 1.21404 0.92290 0.93185 1.50819 0.93544 1.25653 1.02977 0.94853 0.94505 1.70002 1.35258 0.99534 1.50285 0.85619 0.80217 0.77842 0.78360 1.20120 1.20435 1.19623 1.21808 0.83140 0.98344 0.99142 1.68228 1.42887 0.99035 1.19594 1.23125 0.87157 0.93917 0.90523 1.20633 0.98567 0.88681 0.84830 1.86439 1.82251 1.45048 1.25520 1.68127 1.08917 1.31212 1.18063 0.88108 0.89651 0.87742 0.80790 0.87029 0.94666 0.91853 0.89332 0.91431 0.95731 0.92846 0.95903 0.92862 0.88438 0.90689 0.73974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.21 71.24 0.73 -0.68 16 2 C 0.18 4.57 6.82 42.42 0.29 4.86 16 3 C -0.24 -6.70 8.95 22.58 0.20 -6.49 16 4 C 0.34 12.34 6.40 133.16 0.85 13.19 16 5 N -0.48 -18.62 4.68 -701.42 -3.28 -21.90 16 6 C 0.07 2.32 5.26 86.33 0.45 2.77 16 7 C -0.11 -3.93 6.09 30.65 0.19 -3.74 16 8 C -0.11 -5.12 5.02 30.67 0.15 -4.97 16 9 C 0.05 2.70 2.26 -11.49 -0.03 2.67 16 10 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 11 C -0.54 -30.78 8.56 25.60 0.22 -30.56 16 12 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 13 C 0.02 1.09 5.30 84.65 0.45 1.54 16 14 N -0.91 -52.63 11.35 21.45 0.24 -52.39 16 15 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 C 0.10 4.77 3.89 86.33 0.34 5.11 16 20 N -0.57 -22.15 8.75 -185.44 -1.62 -23.78 16 21 C 0.32 10.76 7.27 138.76 1.01 11.77 16 22 C 0.15 3.89 7.48 71.23 0.53 4.42 16 23 O -0.58 -14.80 13.64 -148.98 -2.03 -16.84 16 24 N -0.54 -16.40 10.27 -176.28 -1.81 -18.21 16 25 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.03 8.09 -2.39 -0.02 1.01 16 28 H 0.17 3.63 7.23 -2.91 -0.02 3.61 16 29 H 0.11 2.77 6.75 -2.39 -0.02 2.75 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 33 H 0.07 3.58 6.15 -2.39 -0.01 3.57 16 34 H 0.02 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.02 1.12 8.12 -2.39 -0.02 1.10 16 37 H 0.05 2.63 7.73 -2.39 -0.02 2.61 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.41 5.36 9.12 -74.05 -0.68 4.68 16 Total: -1.00 -72.57 325.60 -0.72 -73.29 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.37 Total: 13.62 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 5.39 Total: -0.12 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -6.47 Total: -116.27 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -2.03 Total: -16.84 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.57 -0.72 -73.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328572095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.737 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds