Wall clock time and date at job start Mon Mar 30 2020 01:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38122 * 120.40396 * 2 1 4 4 C 1.39622 * 118.33904 * 180.02562 * 3 2 1 5 5 N 1.38536 * 120.53337 * 179.97438 * 4 3 2 6 6 C 1.46850 * 110.99859 * 304.23017 * 5 4 3 7 7 C 1.53040 * 109.52234 * 174.16193 * 6 5 4 8 8 C 1.53121 * 109.28026 * 59.17889 * 7 6 5 9 9 C 1.50694 * 109.52602 * 182.43846 * 8 7 6 10 10 H 1.08002 * 119.99904 * 119.67825 * 9 8 7 11 11 C 1.37880 * 120.00046 * 299.69058 * 9 8 7 12 12 N 1.31511 * 119.99746 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99723 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46943 * 90.00022 * 13 11 9 15 15 H 1.48498 * 109.46686 * 209.99659 * 13 11 9 16 16 H 1.48496 * 109.47245 * 329.99578 * 13 11 9 17 17 C 1.53121 * 109.16134 * 302.35229 * 8 7 6 18 18 C 1.46847 * 111.00004 * 180.02562 * 5 4 3 19 19 N 1.32995 * 118.93492 * 0.02562 * 4 3 2 20 20 C 1.31750 * 120.68612 * 359.97438 * 19 4 3 21 21 C 1.50698 * 119.08628 * 179.97438 * 20 19 4 22 22 O 1.42901 * 109.46931 * 270.02279 * 21 20 19 23 23 N 1.31794 * 121.83438 * 359.97438 * 20 19 4 24 24 H 1.08997 * 109.46811 * 269.97322 * 1 2 3 25 25 H 1.09002 * 109.47100 * 29.97273 * 1 2 3 26 26 H 1.09002 * 109.47085 * 149.97352 * 1 2 3 27 27 H 1.08001 * 120.82733 * 0.02733 * 3 2 1 28 28 H 1.08992 * 109.46622 * 294.17665 * 6 5 4 29 29 H 1.08998 * 109.45954 * 54.15299 * 6 5 4 30 30 H 1.09003 * 109.50163 * 299.23932 * 7 6 5 31 31 H 1.08993 * 109.50345 * 179.12488 * 7 6 5 32 32 H 1.09001 * 109.51814 * 62.24872 * 8 7 6 33 33 H 0.97004 * 119.99515 * 180.02562 * 12 11 9 34 34 H 1.09005 * 109.49995 * 297.70933 * 17 8 7 35 35 H 1.08995 * 109.50178 * 177.59153 * 17 8 7 36 36 H 1.08995 * 109.46399 * 305.85744 * 18 5 4 37 37 H 1.09002 * 109.46229 * 65.82419 * 18 5 4 38 38 H 1.09002 * 109.47114 * 30.01689 * 21 20 19 39 39 H 1.09000 * 109.47686 * 150.02027 * 21 20 19 40 40 H 0.96704 * 114.00190 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6013 1.1410 -0.0005 5 7 4.3477 2.3081 -0.0011 6 6 3.9810 3.1667 -1.1347 7 6 4.7167 4.5039 -1.0223 8 6 6.2269 4.2512 -1.0169 9 6 6.9558 5.5590 -0.8463 10 1 7.6035 5.7092 0.0048 11 6 6.7958 6.5640 -1.7767 12 7 6.0074 6.3809 -2.8132 13 14 7.6989 8.1854 -1.5647 14 1 9.0187 8.1090 -2.2411 15 1 6.8970 9.2808 -2.1665 16 1 7.8987 8.4553 -0.1182 17 6 6.5758 3.3156 0.1439 18 6 5.7861 2.0129 -0.0022 19 7 4.2024 -0.0454 -0.0016 20 6 3.4956 -1.1573 -0.0016 21 6 4.2140 -2.4820 -0.0033 22 8 4.4399 -2.8995 -1.3512 23 7 2.1777 -1.1432 0.0000 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6862 2.1380 0.0004 28 1 4.2599 2.6760 -2.0671 29 1 2.9053 3.3421 -1.1243 30 1 4.4277 5.0016 -0.0966 31 1 4.4564 5.1350 -1.8720 32 1 6.5222 3.7887 -1.9588 33 1 5.8951 7.0878 -3.4679 34 1 6.3160 3.7946 1.0880 35 1 7.6436 3.0977 0.1273 36 1 6.0215 1.3501 0.8305 37 1 6.0566 1.5276 -0.9401 38 1 5.1700 -2.3776 0.5098 39 1 3.6053 -3.2262 0.5103 40 1 4.8998 -3.7467 -1.4287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328591219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:23 Heat of formation + Delta-G solvation = -1.373282 kcal Electronic energy + Delta-G solvation = -21600.647788 eV Core-core repulsion = 18415.262647 eV Total energy + Delta-G solvation = -3185.385141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15669 -38.49480 -36.87893 -34.75142 -33.78655 -32.19922 -30.56002 -29.98595 -28.59245 -27.26416 -25.88936 -23.00218 -22.67250 -21.50509 -21.14885 -18.83183 -17.70614 -17.53745 -16.85521 -16.24530 -15.30730 -15.03308 -14.87557 -14.57054 -14.37516 -14.06707 -13.59538 -13.32159 -13.08833 -12.73312 -12.59660 -12.55375 -12.26572 -12.11238 -11.54194 -11.16182 -10.98059 -10.69298 -10.57716 -10.41726 -10.31188 -10.28939 -10.12076 -9.65939 -9.49951 -9.16065 -9.02327 -8.80378 -8.35905 -8.08400 -6.02744 -4.08011 0.99144 1.26657 3.29178 3.36131 3.39532 3.40237 3.85881 3.91409 4.20291 4.41803 4.69143 4.90071 5.01518 5.18853 5.25274 5.27694 5.30869 5.42696 5.49206 5.56807 5.72744 5.79199 5.83464 5.94401 6.04177 6.21824 6.30949 6.38506 6.51377 6.73872 6.79395 6.98302 7.13977 7.28831 7.40706 7.45517 7.47936 7.70229 7.94010 8.04193 8.29444 8.40925 8.95415 9.56974 11.03902 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028230 B = 0.004046 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.598448 B = 6919.539653 C = 7500.174712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.182 3.818 3 C -0.245 4.245 4 C 0.369 3.631 5 N -0.467 5.467 6 C 0.063 3.937 7 C -0.106 4.106 8 C 0.045 3.955 9 C -0.511 4.511 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.111 4.111 18 C 0.070 3.930 19 N -0.546 5.546 20 C 0.341 3.659 21 C 0.152 3.848 22 O -0.562 6.562 23 N -0.538 5.538 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 -14.428 5.236 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.039 3.961 3 C -0.270 4.270 4 C 0.128 3.872 5 N -0.183 5.183 6 C -0.062 4.062 7 C -0.144 4.144 8 C 0.027 3.973 9 C -0.549 4.549 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.149 4.149 18 C -0.057 4.057 19 N -0.269 5.269 20 C 0.070 3.930 21 C 0.072 3.928 22 O -0.367 6.367 23 N -0.257 5.257 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.165 0.835 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.111 -14.255 5.352 17.252 hybrid contribution 0.500 0.915 -0.298 1.085 sum -7.611 -13.340 5.054 16.168 Atomic orbital electron populations 1.20726 0.87935 1.03851 1.03404 1.21442 0.97256 0.87671 0.89692 1.22219 0.94098 1.00738 1.09969 1.20396 0.90655 0.88885 0.87254 1.58906 1.07620 1.10259 1.41501 1.22557 1.00162 0.95445 0.88034 1.21779 0.97500 0.92109 1.03060 1.18731 0.91872 0.93904 0.92830 1.21174 1.26668 0.98577 1.08457 0.92586 1.24970 0.95269 0.98601 0.95131 1.69854 1.37664 1.33485 1.12177 0.86604 0.79711 0.83455 0.78296 1.20745 1.21267 1.19926 1.21787 0.97777 0.93950 1.01373 1.22109 0.83647 0.98645 1.01255 1.68220 1.41536 0.98075 1.19052 1.22417 0.86495 0.93190 0.90897 1.20532 0.98110 0.89560 0.84582 1.86527 1.81637 1.43139 1.25381 1.67987 1.09296 1.30320 1.18132 0.89904 0.90173 0.90134 0.83513 0.94053 0.91412 0.93292 0.88023 0.95741 0.92989 0.92381 0.92332 0.91033 0.93600 0.90967 0.91043 0.76706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.21 36.00 0.37 -0.60 16 2 C 0.18 2.56 6.82 -82.33 -0.56 2.00 16 3 C -0.24 -3.72 8.95 -39.11 -0.35 -4.07 16 4 C 0.37 6.55 6.41 -154.78 -0.99 5.55 16 5 N -0.47 -8.79 4.68 -173.06 -0.81 -9.60 16 6 C 0.06 1.21 5.25 -3.83 -0.02 1.19 16 7 C -0.11 -2.41 5.12 -26.65 -0.14 -2.55 16 8 C 0.05 1.10 2.16 -91.65 -0.20 0.90 16 9 C -0.51 -13.74 8.56 -34.44 -0.29 -14.03 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 12 N -0.89 -24.88 11.37 55.43 0.63 -24.25 16 13 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.11 -2.32 5.32 -26.65 -0.14 -2.46 16 18 C 0.07 1.34 4.67 -3.84 -0.02 1.32 16 19 N -0.55 -9.70 8.75 -9.97 -0.09 -9.78 16 20 C 0.34 5.44 7.27 -157.23 -1.14 4.30 16 21 C 0.15 1.81 7.48 36.00 0.27 2.08 16 22 O -0.56 -6.82 13.64 -35.23 -0.48 -7.30 16 23 N -0.54 -8.33 10.27 -7.07 -0.07 -8.41 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.15 1.95 7.23 -52.49 -0.38 1.57 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.15 6.74 -51.93 -0.35 0.80 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.10 2.55 6.17 -51.93 -0.32 2.23 16 32 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.30 7.73 -51.93 -0.40 0.90 16 37 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.39 2.35 9.12 45.56 0.42 2.77 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -31.58 325.63 -9.47 -41.05 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.22 Total: 2.25 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.31 Total: -4.81 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.34 Total: -52.04 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.48 Total: -7.30 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.58 -9.47 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328591219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.674 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds